Wall clock time and date at job start Tue Mar 31 2020 13:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.46894 * 2 1 4 4 C 1.52994 * 109.47129 * 239.99916 * 2 1 3 5 5 C 1.53002 * 109.46765 * 119.99662 * 2 1 3 6 6 N 1.46503 * 109.47010 * 60.00253 * 5 2 1 7 7 C 1.46492 * 120.00059 * 270.00163 * 6 5 2 8 8 C 1.50701 * 109.46741 * 269.99959 * 7 6 5 9 9 H 1.07996 * 120.00500 * 359.97438 * 8 7 6 10 10 C 1.37878 * 120.00133 * 180.02562 * 8 7 6 11 11 N 1.31514 * 119.99757 * 359.97438 * 10 8 7 12 12 Si 1.86794 * 120.00236 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47081 * 59.99996 * 12 10 8 14 14 H 1.48502 * 109.47274 * 179.97438 * 12 10 8 15 15 H 1.48499 * 109.47406 * 299.99935 * 12 10 8 16 16 C 1.38696 * 119.99795 * 89.99862 * 6 5 2 17 17 N 1.30242 * 126.17004 * 0.02562 * 16 6 5 18 18 N 1.26103 * 117.62309 * 179.97438 * 17 16 6 19 19 C 1.29323 * 117.96902 * 0.02562 * 18 17 16 20 20 C 1.50698 * 126.06233 * 179.97438 * 19 18 17 21 21 F 1.39894 * 109.47398 * 5.02074 * 20 19 18 22 22 F 1.39904 * 109.46826 * 125.02723 * 20 19 18 23 23 F 1.39909 * 109.46753 * 245.02190 * 20 19 18 24 24 S 1.76482 * 107.86744 * 359.97438 * 19 18 17 25 25 H 1.08990 * 109.47133 * 300.00220 * 1 2 3 26 26 H 1.09001 * 109.46481 * 60.00369 * 1 2 3 27 27 H 1.08997 * 109.46840 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46893 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47189 * 299.99941 * 3 2 1 30 30 H 1.09001 * 109.47126 * 59.99565 * 3 2 1 31 31 H 1.08997 * 109.47530 * 299.99581 * 4 2 1 32 32 H 1.09001 * 109.47672 * 60.00444 * 4 2 1 33 33 H 1.09006 * 109.46880 * 179.97438 * 4 2 1 34 34 H 1.09001 * 109.47219 * 300.00413 * 5 2 1 35 35 H 1.08999 * 109.47018 * 180.02562 * 5 2 1 36 36 H 1.08994 * 109.47426 * 29.99571 * 7 6 5 37 37 H 1.09002 * 109.47339 * 150.00246 * 7 6 5 38 38 H 0.97010 * 119.99842 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0400 -0.7212 1.2493 6 7 1.5516 -2.1024 1.2493 7 6 0.2716 -2.4268 1.8835 8 6 0.5024 -2.7747 3.3315 9 1 1.5025 -2.7566 3.7386 10 6 -0.5633 -3.1174 4.1366 11 7 -1.7812 -3.1400 3.6409 12 14 -0.2771 -3.5494 5.9312 13 1 0.3401 -2.3916 6.6267 14 1 -1.5748 -3.8781 6.5742 15 1 0.6305 -4.7213 6.0197 16 6 2.3013 -3.1030 0.6488 17 7 3.4497 -2.9508 0.0536 18 7 3.9933 -3.9765 -0.4391 19 6 3.3754 -5.1064 -0.3210 20 6 3.8550 -6.4381 -0.8384 21 9 5.1387 -6.2948 -1.3756 22 9 3.8893 -7.3616 0.2119 23 9 2.9819 -6.8941 -1.8320 24 16 1.8712 -4.8121 0.5538 25 1 -0.3633 0.5138 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9563 0.8899 31 1 1.6768 -1.7489 -1.2492 32 1 1.6768 -0.2074 -2.1392 33 1 3.1301 -0.7208 -1.2494 34 1 1.6766 -0.2074 2.1393 35 1 3.1300 -0.7208 1.2496 36 1 -0.3945 -1.5665 1.8184 37 1 -0.1817 -3.2768 1.3734 38 1 -2.5310 -3.3807 4.2073 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594569003.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:00 Heat of formation + Delta-G solvation = -103.464371 kcal Electronic energy + Delta-G solvation = -26024.126839 eV Core-core repulsion = 21806.475730 eV Total energy + Delta-G solvation = -4217.651109 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.097 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -51.28454 -48.81231 -48.77733 -42.10457 -39.78339 -36.49665 -34.79872 -32.68533 -30.06852 -28.83351 -28.13488 -28.02314 -27.02783 -25.55244 -23.89652 -21.71566 -20.59251 -20.04648 -19.70421 -19.13097 -18.90255 -18.69340 -17.29967 -16.96925 -16.55939 -15.94616 -15.70858 -15.57789 -15.48444 -15.20978 -15.13726 -14.92654 -14.92493 -14.61024 -14.55310 -14.40168 -13.91081 -13.66913 -13.36201 -13.14298 -12.98334 -12.70605 -12.63712 -12.56502 -12.50062 -12.18907 -11.83076 -11.62793 -11.60384 -11.53938 -11.40821 -11.24462 -10.77149 -10.67158 -8.98160 -8.27613 -6.46607 -0.65575 -0.49006 0.14571 1.27713 1.39404 1.41153 1.45338 1.48772 1.79729 2.34199 2.40092 2.99861 3.01506 3.18199 3.59134 3.79786 3.81164 3.98730 4.03703 4.39465 4.51768 4.69578 4.73309 4.80354 4.87308 4.92264 4.96757 5.05377 5.06591 5.19996 5.30631 5.42138 5.47627 5.53397 5.78006 5.85939 5.96778 6.62537 7.24955 7.47603 8.74642 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.009919 B = 0.005673 C = 0.003965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2822.089659 B = 4934.296762 C = 7060.143144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.079 4.079 3 C -0.130 4.130 4 C -0.124 4.124 5 C 0.128 3.872 6 N -0.517 5.517 7 C 0.254 3.746 8 C -0.557 4.557 9 H 0.056 0.944 10 C 0.031 3.969 11 N -0.913 5.913 12 Si 0.953 3.047 13 H -0.268 1.268 14 H -0.280 1.280 15 H -0.274 1.274 16 C 0.327 3.673 17 N -0.361 5.361 18 N -0.163 5.163 19 C -0.182 4.182 20 C 0.581 3.419 21 F -0.157 7.157 22 F -0.164 7.164 23 F -0.163 7.163 24 S 0.119 5.881 25 H 0.056 0.944 26 H 0.067 0.933 27 H 0.037 0.963 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.021 0.979 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.059 0.941 37 H 0.021 0.979 38 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.969 1.952 -7.679 9.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.080 4.080 3 C -0.187 4.187 4 C -0.182 4.182 5 C 0.004 3.996 6 N -0.226 5.226 7 C 0.134 3.866 8 C -0.596 4.596 9 H 0.074 0.926 10 C -0.171 4.171 11 N -0.551 5.551 12 Si 0.778 3.222 13 H -0.193 1.193 14 H -0.205 1.205 15 H -0.200 1.200 16 C -0.043 4.043 17 N -0.216 5.216 18 N -0.003 5.003 19 C -0.466 4.466 20 C 0.522 3.478 21 F -0.138 7.138 22 F -0.146 7.146 23 F -0.144 7.144 24 S 0.356 5.644 25 H 0.075 0.925 26 H 0.086 0.914 27 H 0.056 0.944 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.040 0.960 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.109 0.891 35 H 0.102 0.898 36 H 0.077 0.923 37 H 0.039 0.961 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.790 2.238 -7.581 9.798 hybrid contribution -0.171 -0.695 0.998 1.228 sum 5.619 1.543 -6.583 8.792 Atomic orbital electron populations 1.21942 0.94458 1.01131 1.02165 1.20966 0.95989 0.96804 0.94276 1.21735 1.01367 0.92767 1.02873 1.21746 1.01147 0.98340 0.96928 1.21980 0.99902 0.78508 0.99202 1.47077 1.19882 1.04932 1.50740 1.19581 0.78007 0.97451 0.91573 1.21561 0.94039 1.48662 0.95308 0.92578 1.25554 0.94570 0.94469 1.02501 1.69972 0.99432 1.47622 1.38075 0.85675 0.77640 0.79000 0.79894 1.19313 1.20474 1.19973 1.27061 0.92078 0.92190 0.92977 1.71605 1.08444 1.19795 1.21724 1.70550 1.25422 0.93868 1.10491 1.28780 1.01334 0.98948 1.17554 1.16265 0.75295 0.80956 0.75264 1.93231 1.38665 1.95697 1.86230 1.93252 1.96226 1.67635 1.57440 1.93249 1.69397 1.89725 1.62062 1.86272 1.19647 1.03309 1.55160 0.92469 0.91358 0.94435 0.91910 0.91102 0.91768 0.95969 0.91826 0.92258 0.89145 0.89800 0.92288 0.96129 0.91959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.83 7.22 71.98 0.52 -3.31 16 2 C -0.08 -2.06 0.84 -52.18 -0.04 -2.11 16 3 C -0.13 -2.59 8.47 71.98 0.61 -1.98 16 4 C -0.12 -3.45 7.20 71.98 0.52 -2.93 16 5 C 0.13 3.98 4.67 86.38 0.40 4.39 16 6 N -0.52 -19.42 2.06 -709.03 -1.46 -20.89 16 7 C 0.25 11.08 4.10 85.63 0.35 11.43 16 8 C -0.56 -27.13 9.39 25.60 0.24 -26.89 16 9 H 0.06 2.78 7.81 -2.91 -0.02 2.76 16 10 C 0.03 1.54 5.46 84.65 0.46 2.01 16 11 N -0.91 -47.62 13.29 21.45 0.28 -47.33 16 12 Si 0.95 40.03 29.54 68.60 2.03 42.06 16 13 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 14 H -0.28 -11.51 7.11 99.48 0.71 -10.80 16 15 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 16 C 0.33 12.46 6.32 179.13 1.13 13.59 16 17 N -0.36 -13.51 9.43 -55.84 -0.53 -14.04 16 18 N -0.16 -6.01 11.33 -47.71 -0.54 -6.55 16 19 C -0.18 -6.27 7.08 88.48 0.63 -5.65 16 20 C 0.58 17.26 3.57 71.24 0.25 17.51 16 21 F -0.16 -4.55 17.14 44.97 0.77 -3.78 16 22 F -0.16 -4.75 17.30 44.97 0.78 -3.98 16 23 F -0.16 -4.58 17.30 44.97 0.78 -3.80 16 24 S 0.12 4.38 22.25 -56.49 -1.26 3.12 16 25 H 0.06 1.57 8.08 -2.39 -0.02 1.55 16 26 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.04 1.21 5.99 -2.39 -0.01 1.20 16 28 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.02 0.71 6.14 -2.39 -0.01 0.69 16 32 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.06 1.70 7.81 -2.38 -0.02 1.68 16 34 H 0.09 2.80 8.07 -2.39 -0.02 2.79 16 35 H 0.08 2.58 7.67 -2.39 -0.02 2.56 16 36 H 0.06 2.63 6.05 -2.39 -0.01 2.61 16 37 H 0.02 0.98 7.16 -2.39 -0.02 0.96 16 38 H 0.27 13.50 8.31 -92.70 -0.77 12.73 16 Total: -1.00 -51.83 339.07 7.02 -44.81 By element: Atomic # 1 Polarization: 3.21 SS G_CDS: 1.09 Total: 4.31 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: 5.07 Total: 6.07 kcal Atomic # 7 Polarization: -86.57 SS G_CDS: -2.24 Total: -88.81 kcal Atomic # 9 Polarization: -13.88 SS G_CDS: 2.33 Total: -11.55 kcal Atomic # 14 Polarization: 40.03 SS G_CDS: 2.03 Total: 42.06 kcal Atomic # 16 Polarization: 4.38 SS G_CDS: -1.26 Total: 3.12 kcal Total: -51.83 7.02 -44.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594569003.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.658 kcal (2) G-P(sol) polarization free energy of solvation -51.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds