Wall clock time and date at job start Tue Mar 31 2020 14:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47132 * 2 1 4 4 H 1.08997 * 109.47165 * 304.99999 * 3 2 1 5 5 C 1.50695 * 109.47175 * 184.99898 * 3 2 1 6 6 H 1.08000 * 120.00488 * 240.00154 * 5 3 2 7 7 C 1.37882 * 120.00037 * 59.99489 * 5 3 2 8 8 N 1.31511 * 119.99913 * 179.97438 * 7 5 3 9 9 Si 1.86794 * 119.99902 * 0.02562 * 7 5 3 10 10 H 1.48504 * 109.47199 * 269.99601 * 9 7 5 11 11 H 1.48504 * 109.47164 * 29.99551 * 9 7 5 12 12 H 1.48499 * 109.47193 * 149.99602 * 9 7 5 13 13 N 1.46504 * 109.47340 * 64.99956 * 3 2 1 14 14 C 1.34777 * 119.99987 * 275.00094 * 13 3 2 15 15 O 1.21362 * 119.99941 * 359.97438 * 14 13 3 16 16 C 1.49322 * 119.99930 * 179.97438 * 14 13 3 17 17 O 1.21394 * 119.99881 * 0.02562 * 16 14 13 18 18 N 1.34777 * 119.99930 * 179.97438 * 16 14 13 19 19 C 1.39902 * 119.99990 * 175.58980 * 18 16 14 20 20 C 1.38548 * 120.53725 * 34.53587 * 19 18 16 21 21 N 1.31976 * 120.73969 * 179.97438 * 20 19 18 22 22 C 1.31999 * 121.98478 * 359.97438 * 21 20 19 23 23 C 1.37962 * 120.99788 * 0.02562 * 22 21 20 24 24 C 1.39371 * 119.14176 * 359.69829 * 23 22 21 25 25 S 1.76198 * 120.89726 * 180.27370 * 24 23 22 26 26 C 1.81403 * 103.00046 * 0.27594 * 25 24 23 27 27 H 1.09001 * 109.47580 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46909 * 299.99859 * 1 2 3 29 29 H 1.08999 * 109.47151 * 59.99815 * 1 2 3 30 30 H 1.08990 * 109.47048 * 239.99563 * 2 1 3 31 31 H 1.09000 * 109.46686 * 119.99925 * 2 1 3 32 32 H 0.97004 * 119.99978 * 179.97438 * 8 7 5 33 33 H 0.97000 * 119.99939 * 95.00051 * 13 3 2 34 34 H 0.97004 * 119.99594 * 355.58401 * 18 16 14 35 35 H 1.07995 * 119.62757 * 359.97438 * 20 19 18 36 36 H 1.07998 * 119.50202 * 179.97438 * 22 21 20 37 37 H 1.08002 * 120.43308 * 179.97438 * 23 22 21 38 38 H 1.08996 * 109.47532 * 59.99330 * 26 25 24 39 39 H 1.08997 * 109.47115 * 180.02562 * 26 25 24 40 40 H 1.09002 * 109.46781 * 299.99747 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8783 -1.2279 8 7 5.4539 0.8803 -1.3362 9 14 3.0964 0.1098 -2.5706 10 1 2.8745 -1.3263 -2.2644 11 1 1.7881 0.8091 -2.6394 12 1 3.7941 0.2357 -3.8754 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6644 1.3670 15 8 -0.3398 2.6327 0.4335 16 6 0.0399 3.3316 2.6431 17 8 0.8152 3.3637 3.5766 18 7 -1.1772 3.8989 2.7580 19 6 -1.5829 4.4424 3.9817 20 6 -0.6648 5.0562 4.8183 21 7 -1.0432 5.5707 5.9732 22 6 -2.2978 5.5262 6.3810 23 6 -3.2753 4.9333 5.6087 24 6 -2.9256 4.3809 4.3778 25 16 -4.1379 3.6188 3.3510 26 6 -5.6646 3.8088 4.3122 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 5.8771 0.4818 -2.1128 33 1 2.2719 2.1232 1.9978 34 1 -1.7718 3.9305 1.9923 35 1 0.3721 5.1143 4.5219 36 1 -2.5630 5.9596 7.3339 37 1 -4.2990 4.9016 5.9514 38 1 -5.8609 4.8682 4.4767 39 1 -6.4962 3.3654 3.7646 40 1 -5.5537 3.3063 5.2731 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000615214465.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:46 Heat of formation + Delta-G solvation = -21.244723 kcal Electronic energy + Delta-G solvation = -24714.254595 eV Core-core repulsion = 21042.025538 eV Total energy + Delta-G solvation = -3672.229057 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.109 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.20060 -39.88388 -38.41495 -35.89512 -35.19976 -32.75311 -32.45015 -31.61107 -30.41261 -29.41531 -27.80515 -25.34682 -24.32836 -23.14669 -22.48491 -20.76590 -19.83592 -19.06760 -18.26158 -17.59534 -16.90953 -16.51552 -15.98019 -15.81005 -15.57065 -15.43174 -14.68844 -14.53803 -14.40290 -14.06266 -13.95338 -13.77618 -13.54205 -13.09804 -13.07034 -12.77752 -12.45153 -12.05228 -11.90022 -11.51873 -11.29679 -11.19163 -10.95791 -10.90097 -10.71551 -10.59454 -10.01152 -9.75315 -9.64321 -9.34396 -9.26370 -8.85888 -8.84064 -8.32172 -7.92041 -6.26097 -4.30253 0.61794 0.76064 0.93868 1.64921 1.85669 2.40590 3.18914 3.31441 3.34002 3.36566 3.54327 3.82690 4.25559 4.29163 4.35457 4.55119 4.56154 4.62343 4.77065 4.88540 5.06102 5.12320 5.24499 5.34976 5.61392 5.84355 5.85995 5.92918 6.04987 6.41860 6.51552 6.58123 6.67554 6.76821 6.85199 7.01764 7.14727 7.35498 7.54066 7.73991 7.96938 8.34725 8.46391 8.74417 9.32078 10.85716 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.022130 B = 0.003125 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.951737 B = 8957.875585 C = 9971.603208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.141 4.141 3 C 0.241 3.759 4 H 0.056 0.944 5 C -0.540 4.540 6 H 0.084 0.916 7 C 0.081 3.919 8 N -0.888 5.888 9 Si 0.882 3.118 10 H -0.274 1.274 11 H -0.259 1.259 12 H -0.293 1.293 13 N -0.658 5.658 14 C 0.499 3.501 15 O -0.526 6.526 16 C 0.511 3.489 17 O -0.498 6.498 18 N -0.643 5.643 19 C 0.115 3.885 20 C 0.120 3.880 21 N -0.469 5.469 22 C 0.099 3.901 23 C -0.171 4.171 24 C -0.076 4.076 25 S -0.084 6.084 26 C -0.148 4.148 27 H 0.035 0.965 28 H 0.048 0.952 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.269 0.731 33 H 0.409 0.591 34 H 0.425 0.575 35 H 0.178 0.822 36 H 0.160 0.840 37 H 0.139 0.861 38 H 0.087 0.913 39 H 0.113 0.887 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.631 6.667 12.212 25.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.179 4.179 3 C 0.138 3.862 4 H 0.073 0.927 5 C -0.578 4.578 6 H 0.102 0.898 7 C -0.123 4.123 8 N -0.524 5.524 9 Si 0.712 3.288 10 H -0.201 1.201 11 H -0.184 1.184 12 H -0.220 1.220 13 N -0.307 5.307 14 C 0.277 3.723 15 O -0.405 6.405 16 C 0.294 3.706 17 O -0.371 6.371 18 N -0.291 5.291 19 C 0.012 3.988 20 C -0.041 4.041 21 N -0.179 5.179 22 C -0.059 4.059 23 C -0.198 4.198 24 C -0.199 4.199 25 S 0.157 5.843 26 C -0.317 4.317 27 H 0.054 0.946 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.245 0.755 34 H 0.264 0.736 35 H 0.195 0.805 36 H 0.178 0.822 37 H 0.157 0.843 38 H 0.106 0.894 39 H 0.131 0.869 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -20.745 6.383 11.455 24.542 hybrid contribution -1.269 -0.321 0.005 1.309 sum -22.015 6.062 11.460 25.549 Atomic orbital electron populations 1.21895 0.96863 0.99477 1.02073 1.22318 0.94411 0.99548 1.01665 1.19376 0.96257 0.88723 0.81798 0.92680 1.21000 0.88165 1.40388 1.08213 0.89824 1.24817 0.94898 0.95033 0.97595 1.69860 1.08683 1.44031 1.29811 0.86919 0.80930 0.80025 0.80975 1.20101 1.18396 1.22010 1.46107 1.13482 1.52394 1.18746 1.19482 0.84387 0.81458 0.86953 1.90758 1.51141 1.59314 1.39248 1.20956 0.81420 0.78539 0.89696 1.90754 1.49988 1.56421 1.39945 1.43163 1.18118 1.56227 1.11570 1.18341 0.92114 0.99072 0.89279 1.23163 1.00608 0.91187 0.89136 1.67866 1.18561 1.16777 1.14684 1.22686 0.87949 0.95876 0.99412 1.21959 1.01704 1.02165 0.93939 1.22179 0.96317 1.02904 0.98478 1.85810 1.00198 1.71474 1.26853 1.23753 0.97708 1.06196 1.04015 0.94551 0.93279 0.92621 0.92282 0.91888 0.92124 0.75547 0.73564 0.80470 0.82243 0.84348 0.89412 0.86897 0.89385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 8.51 37.16 0.32 -2.45 16 2 C -0.14 -3.01 5.11 -26.73 -0.14 -3.14 16 3 C 0.24 5.50 1.83 -69.08 -0.13 5.37 16 4 H 0.06 1.35 6.63 -51.93 -0.34 1.01 16 5 C -0.54 -14.26 9.31 -34.44 -0.32 -14.58 16 6 H 0.08 2.35 7.98 -52.49 -0.42 1.94 16 7 C 0.08 2.22 5.45 -17.82 -0.10 2.12 16 8 N -0.89 -25.88 13.96 55.43 0.77 -25.10 16 9 Si 0.88 20.99 24.41 -169.99 -4.15 16.84 16 10 H -0.27 -6.32 6.83 56.52 0.39 -5.94 16 11 H -0.26 -6.02 6.53 56.52 0.37 -5.65 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 13 N -0.66 -12.99 5.01 -55.41 -0.28 -13.27 16 14 C 0.50 9.06 6.45 -11.65 -0.08 8.99 16 15 O -0.53 -10.23 13.62 5.49 0.07 -10.16 16 16 C 0.51 8.13 7.74 -11.65 -0.09 8.04 16 17 O -0.50 -8.51 13.91 5.46 0.08 -8.43 16 18 N -0.64 -8.69 5.05 -10.06 -0.05 -8.75 16 19 C 0.12 1.48 6.34 -83.35 -0.53 0.95 16 20 C 0.12 1.62 9.88 -17.38 -0.17 1.45 16 21 N -0.47 -5.94 10.35 -13.18 -0.14 -6.07 16 22 C 0.10 0.94 11.17 -17.58 -0.20 0.74 16 23 C -0.17 -1.47 9.43 -39.26 -0.37 -1.84 16 24 C -0.08 -0.80 6.18 -38.45 -0.24 -1.04 16 25 S -0.08 -0.77 21.61 -107.50 -2.32 -3.09 16 26 C -0.15 -0.71 9.19 101.05 0.93 0.22 16 27 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.91 5.65 -51.93 -0.29 0.62 16 29 H 0.05 1.09 7.85 -51.93 -0.41 0.68 16 30 H 0.06 1.32 3.22 -51.93 -0.17 1.15 16 31 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 33 H 0.41 7.70 8.01 -40.82 -0.33 7.38 16 34 H 0.43 5.38 7.54 -40.82 -0.31 5.07 16 35 H 0.18 2.55 6.19 -52.49 -0.32 2.23 16 36 H 0.16 0.98 8.06 -52.49 -0.42 0.55 16 37 H 0.14 0.74 6.07 -52.49 -0.32 0.43 16 38 H 0.09 0.32 7.81 -51.93 -0.41 -0.08 16 39 H 0.11 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.09 0.36 7.79 -51.92 -0.40 -0.05 16 LS Contribution 340.51 15.07 5.13 5.13 Total: -1.00 -30.70 340.51 -6.58 -37.28 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -4.59 Total: 10.79 kcal Atomic # 6 Polarization: 5.93 SS G_CDS: -1.11 Total: 4.83 kcal Atomic # 7 Polarization: -53.50 SS G_CDS: 0.31 Total: -53.19 kcal Atomic # 8 Polarization: -18.74 SS G_CDS: 0.15 Total: -18.59 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -4.15 Total: 16.84 kcal Atomic # 16 Polarization: -0.77 SS G_CDS: -2.32 Total: -3.09 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.70 -6.58 -37.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615214465.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.035 kcal (2) G-P(sol) polarization free energy of solvation -30.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds