Wall clock time and date at job start Tue Mar 31 2020 14:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47132 * 2 1 4 4 H 1.08997 * 109.47165 * 304.99999 * 3 2 1 5 5 C 1.50695 * 109.47175 * 184.99898 * 3 2 1 6 6 H 1.08000 * 120.00488 * 240.00154 * 5 3 2 7 7 C 1.37882 * 120.00037 * 59.99489 * 5 3 2 8 8 N 1.31511 * 119.99913 * 179.97438 * 7 5 3 9 9 Si 1.86794 * 119.99902 * 0.02562 * 7 5 3 10 10 H 1.48504 * 109.47199 * 269.99601 * 9 7 5 11 11 H 1.48504 * 109.47164 * 29.99551 * 9 7 5 12 12 H 1.48499 * 109.47193 * 149.99602 * 9 7 5 13 13 N 1.46504 * 109.47340 * 64.99956 * 3 2 1 14 14 C 1.34777 * 119.99987 * 275.00094 * 13 3 2 15 15 O 1.21362 * 119.99941 * 359.97438 * 14 13 3 16 16 C 1.49322 * 119.99930 * 179.97438 * 14 13 3 17 17 O 1.21394 * 119.99881 * 0.02562 * 16 14 13 18 18 N 1.34777 * 119.99930 * 179.97438 * 16 14 13 19 19 C 1.39902 * 119.99990 * 175.58980 * 18 16 14 20 20 C 1.38548 * 120.53725 * 34.53587 * 19 18 16 21 21 N 1.31976 * 120.73969 * 179.97438 * 20 19 18 22 22 C 1.31999 * 121.98478 * 359.97438 * 21 20 19 23 23 C 1.37962 * 120.99788 * 0.02562 * 22 21 20 24 24 C 1.39371 * 119.14176 * 359.69829 * 23 22 21 25 25 S 1.76198 * 120.89726 * 180.27370 * 24 23 22 26 26 C 1.81403 * 103.00046 * 0.27594 * 25 24 23 27 27 H 1.09001 * 109.47580 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46909 * 299.99859 * 1 2 3 29 29 H 1.08999 * 109.47151 * 59.99815 * 1 2 3 30 30 H 1.08990 * 109.47048 * 239.99563 * 2 1 3 31 31 H 1.09000 * 109.46686 * 119.99925 * 2 1 3 32 32 H 0.97004 * 119.99978 * 179.97438 * 8 7 5 33 33 H 0.97000 * 119.99939 * 95.00051 * 13 3 2 34 34 H 0.97004 * 119.99594 * 355.58401 * 18 16 14 35 35 H 1.07995 * 119.62757 * 359.97438 * 20 19 18 36 36 H 1.07998 * 119.50202 * 179.97438 * 22 21 20 37 37 H 1.08002 * 120.43308 * 179.97438 * 23 22 21 38 38 H 1.08996 * 109.47532 * 59.99330 * 26 25 24 39 39 H 1.08997 * 109.47115 * 180.02562 * 26 25 24 40 40 H 1.09002 * 109.46781 * 299.99747 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8783 -1.2279 8 7 5.4539 0.8803 -1.3362 9 14 3.0964 0.1098 -2.5706 10 1 2.8745 -1.3263 -2.2644 11 1 1.7881 0.8091 -2.6394 12 1 3.7941 0.2357 -3.8754 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6644 1.3670 15 8 -0.3398 2.6327 0.4335 16 6 0.0399 3.3316 2.6431 17 8 0.8152 3.3637 3.5766 18 7 -1.1772 3.8989 2.7580 19 6 -1.5829 4.4424 3.9817 20 6 -0.6648 5.0562 4.8183 21 7 -1.0432 5.5707 5.9732 22 6 -2.2978 5.5262 6.3810 23 6 -3.2753 4.9333 5.6087 24 6 -2.9256 4.3809 4.3778 25 16 -4.1379 3.6188 3.3510 26 6 -5.6646 3.8088 4.3122 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 5.8771 0.4818 -2.1128 33 1 2.2719 2.1232 1.9978 34 1 -1.7718 3.9305 1.9923 35 1 0.3721 5.1143 4.5219 36 1 -2.5630 5.9596 7.3339 37 1 -4.2990 4.9016 5.9514 38 1 -5.8609 4.8682 4.4767 39 1 -6.4962 3.3654 3.7646 40 1 -5.5537 3.3063 5.2731 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000615214465.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:45 Heat of formation + Delta-G solvation = -44.268809 kcal Electronic energy + Delta-G solvation = -24715.252995 eV Core-core repulsion = 21042.025538 eV Total energy + Delta-G solvation = -3673.227457 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.109 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.35168 -41.04972 -39.74676 -37.43948 -36.47232 -34.44318 -33.53843 -33.26629 -31.36206 -29.80854 -29.62622 -26.66831 -25.19409 -24.67673 -23.81759 -22.20818 -21.40191 -20.39471 -19.21529 -18.66884 -18.54508 -17.73387 -17.43216 -17.16076 -16.89067 -16.45747 -16.07171 -15.63516 -15.37730 -15.27030 -15.01368 -14.88432 -14.54649 -14.36662 -14.11894 -13.80258 -13.75539 -13.68369 -13.43593 -13.00004 -12.89778 -12.67565 -12.40447 -12.29688 -11.86392 -11.51848 -11.42971 -11.38489 -11.30042 -10.89365 -10.73369 -10.57946 -10.01875 -9.74101 -8.66505 -8.38495 -6.46607 -0.32643 -0.06281 0.27331 0.39937 1.15891 1.29828 1.31749 1.37466 1.46891 2.02783 2.26243 2.52219 2.63882 2.96561 3.33598 3.48479 3.60313 3.82564 4.03084 4.20071 4.27866 4.28379 4.29171 4.39773 4.44726 4.55685 4.73565 4.76134 4.87499 4.93638 4.97998 5.07004 5.15515 5.25988 5.44645 5.48567 5.53890 5.69449 6.04324 6.37620 6.52346 6.63675 6.88725 6.92677 7.20833 8.76841 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.022130 B = 0.003125 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.951737 B = 8957.875585 C = 9971.603208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.140 4.140 3 C 0.249 3.751 4 H 0.041 0.959 5 C -0.541 4.541 6 H 0.052 0.948 7 C 0.030 3.970 8 N -0.933 5.933 9 Si 0.939 3.061 10 H -0.258 1.258 11 H -0.250 1.250 12 H -0.293 1.293 13 N -0.665 5.665 14 C 0.503 3.497 15 O -0.536 6.536 16 C 0.518 3.482 17 O -0.515 6.515 18 N -0.627 5.627 19 C 0.088 3.912 20 C 0.102 3.898 21 N -0.496 5.496 22 C 0.103 3.897 23 C -0.159 4.159 24 C -0.072 4.072 25 S -0.121 6.121 26 C -0.138 4.138 27 H 0.062 0.938 28 H 0.049 0.951 29 H 0.048 0.952 30 H 0.052 0.948 31 H 0.067 0.933 32 H 0.271 0.729 33 H 0.411 0.589 34 H 0.429 0.571 35 H 0.157 0.843 36 H 0.197 0.803 37 H 0.179 0.821 38 H 0.105 0.895 39 H 0.128 0.872 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.717 6.468 13.351 29.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.179 4.179 3 C 0.145 3.855 4 H 0.058 0.942 5 C -0.579 4.579 6 H 0.070 0.930 7 C -0.171 4.171 8 N -0.572 5.572 9 Si 0.765 3.235 10 H -0.184 1.184 11 H -0.174 1.174 12 H -0.221 1.221 13 N -0.315 5.315 14 C 0.283 3.717 15 O -0.415 6.415 16 C 0.300 3.700 17 O -0.389 6.389 18 N -0.275 5.275 19 C -0.015 4.015 20 C -0.058 4.058 21 N -0.206 5.206 22 C -0.056 4.056 23 C -0.185 4.185 24 C -0.195 4.195 25 S 0.120 5.880 26 C -0.306 4.306 27 H 0.081 0.919 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.247 0.753 34 H 0.269 0.731 35 H 0.174 0.826 36 H 0.214 0.786 37 H 0.197 0.803 38 H 0.124 0.876 39 H 0.147 0.853 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -24.879 6.199 12.608 28.572 hybrid contribution -0.147 -0.146 -0.195 0.284 sum -25.025 6.053 12.413 28.583 Atomic orbital electron populations 1.21801 0.94737 1.01157 1.01743 1.22242 0.96256 0.97863 1.01505 1.19055 0.93687 0.90091 0.82666 0.94161 1.21229 0.90141 1.39309 1.07255 0.92959 1.25605 0.95856 0.95659 0.99936 1.69986 1.10533 1.45750 1.30915 0.85991 0.79527 0.80036 0.77902 1.18351 1.17422 1.22074 1.45934 1.14442 1.53148 1.17932 1.19752 0.83518 0.80729 0.87687 1.90741 1.51286 1.59478 1.39951 1.20356 0.82282 0.78910 0.88423 1.90760 1.50671 1.57421 1.40081 1.42948 1.16998 1.55249 1.12321 1.18402 0.93370 1.00701 0.89008 1.22892 1.00138 0.92583 0.90140 1.67852 1.20620 1.17665 1.14483 1.23378 0.86911 0.94721 1.00545 1.22417 1.03396 1.00175 0.92538 1.22379 0.95586 1.02269 0.99277 1.86010 1.02574 1.71099 1.28307 1.23924 0.94869 1.07811 1.03954 0.91860 0.93219 0.93312 0.93011 0.91450 0.91936 0.75255 0.73116 0.82577 0.78584 0.80342 0.87628 0.85332 0.87970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.93 8.51 71.98 0.61 -4.31 16 2 C -0.14 -5.83 5.11 30.59 0.16 -5.68 16 3 C 0.25 11.45 1.83 44.24 0.08 11.53 16 4 H 0.04 1.99 6.63 -2.39 -0.02 1.97 16 5 C -0.54 -29.50 9.31 25.60 0.24 -29.26 16 6 H 0.05 3.10 7.98 -2.91 -0.02 3.08 16 7 C 0.03 1.65 5.45 84.66 0.46 2.11 16 8 N -0.93 -56.01 13.96 21.45 0.30 -55.71 16 9 Si 0.94 43.29 24.41 68.60 1.67 44.96 16 10 H -0.26 -11.15 6.83 99.48 0.68 -10.47 16 11 H -0.25 -11.07 6.53 99.48 0.65 -10.42 16 12 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 13 N -0.66 -26.81 5.01 -447.57 -2.24 -29.05 16 14 C 0.50 18.46 6.45 87.23 0.56 19.02 16 15 O -0.54 -20.68 13.62 -3.28 -0.04 -20.73 16 16 C 0.52 16.81 7.74 87.23 0.67 17.48 16 17 O -0.51 -18.24 13.91 -3.38 -0.05 -18.29 16 18 N -0.63 -17.04 5.05 -304.08 -1.54 -18.58 16 19 C 0.09 2.23 6.34 38.39 0.24 2.47 16 20 C 0.10 2.81 9.88 84.75 0.84 3.65 16 21 N -0.50 -12.17 10.35 -195.61 -2.03 -14.19 16 22 C 0.10 1.65 11.17 84.60 0.94 2.60 16 23 C -0.16 -2.15 9.43 22.48 0.21 -1.93 16 24 C -0.07 -1.39 6.18 23.00 0.14 -1.24 16 25 S -0.12 -1.91 21.61 -56.49 -1.22 -3.13 16 26 C -0.14 -0.72 9.19 113.37 1.04 0.32 16 27 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.05 1.76 5.65 -2.38 -0.01 1.75 16 29 H 0.05 1.81 7.85 -2.39 -0.02 1.79 16 30 H 0.05 2.23 3.22 -2.39 -0.01 2.22 16 31 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 32 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 33 H 0.41 16.15 8.01 -92.71 -0.74 15.40 16 34 H 0.43 10.79 7.54 -92.71 -0.70 10.09 16 35 H 0.16 4.82 6.19 -2.91 -0.02 4.81 16 36 H 0.20 1.56 8.06 -2.91 -0.02 1.53 16 37 H 0.18 0.92 6.07 -2.91 -0.02 0.90 16 38 H 0.10 0.24 7.81 -2.39 -0.02 0.22 16 39 H 0.13 0.35 8.14 -2.39 -0.02 0.33 16 40 H 0.10 0.31 7.79 -2.39 -0.02 0.29 16 Total: -1.00 -68.81 340.51 0.65 -68.16 By element: Atomic # 1 Polarization: 30.22 SS G_CDS: -0.41 Total: 29.81 kcal Atomic # 6 Polarization: 10.55 SS G_CDS: 6.21 Total: 16.76 kcal Atomic # 7 Polarization: -112.03 SS G_CDS: -5.51 Total: -117.53 kcal Atomic # 8 Polarization: -38.92 SS G_CDS: -0.09 Total: -39.01 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 1.67 Total: 44.96 kcal Atomic # 16 Polarization: -1.91 SS G_CDS: -1.22 Total: -3.13 kcal Total: -68.81 0.65 -68.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615214465.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.887 kcal (2) G-P(sol) polarization free energy of solvation -68.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds