Wall clock time and date at job start Tue Mar 31 2020 14:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47338 * 2 1 4 4 H 1.09001 * 109.47159 * 55.00175 * 3 2 1 5 5 C 1.50698 * 109.47340 * 175.00355 * 3 2 1 6 6 H 1.08001 * 120.00438 * 119.99921 * 5 3 2 7 7 C 1.37876 * 119.99699 * 300.00374 * 5 3 2 8 8 N 1.31513 * 120.00155 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99929 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47255 * 59.99410 * 9 7 5 11 11 H 1.48504 * 109.47084 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.46912 * 299.99480 * 9 7 5 13 13 N 1.46501 * 109.47055 * 295.00529 * 3 2 1 14 14 C 1.34769 * 120.00306 * 85.00026 * 13 3 2 15 15 O 1.21360 * 120.00149 * 359.97438 * 14 13 3 16 16 C 1.49322 * 120.00310 * 179.97438 * 14 13 3 17 17 O 1.21395 * 120.00030 * 0.02562 * 16 14 13 18 18 N 1.34777 * 120.00349 * 179.97438 * 16 14 13 19 19 C 1.39911 * 120.00123 * 175.59336 * 18 16 14 20 20 C 1.38544 * 120.53573 * 34.53757 * 19 18 16 21 21 N 1.31975 * 120.73941 * 179.97438 * 20 19 18 22 22 C 1.31997 * 121.98568 * 0.02562 * 21 20 19 23 23 C 1.37970 * 120.99570 * 0.02674 * 22 21 20 24 24 C 1.39366 * 119.13835 * 359.65708 * 23 22 21 25 25 S 1.76210 * 120.89503 * 180.33739 * 24 23 22 26 26 C 1.81405 * 102.99726 * 0.26812 * 25 24 23 27 27 H 1.09001 * 109.47093 * 59.99093 * 1 2 3 28 28 H 1.08997 * 109.47346 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46792 * 300.00233 * 1 2 3 30 30 H 1.09004 * 109.46799 * 240.00323 * 2 1 3 31 31 H 1.09000 * 109.47400 * 119.99999 * 2 1 3 32 32 H 0.97007 * 119.99921 * 180.02562 * 8 7 5 33 33 H 0.97006 * 119.99750 * 264.99272 * 13 3 2 34 34 H 0.97006 * 119.99850 * 355.58738 * 18 16 14 35 35 H 1.08001 * 119.63283 * 359.97438 * 20 19 18 36 36 H 1.07998 * 119.50201 * 179.97438 * 22 21 20 37 37 H 1.08000 * 120.42848 * 179.97438 * 23 22 21 38 38 H 1.09000 * 109.47152 * 299.99929 * 26 25 24 39 39 H 1.09001 * 109.47100 * 59.99887 * 26 25 24 40 40 H 1.09003 * 109.46677 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4443 0.1237 6 1 4.1473 1.8888 -0.6524 7 6 4.1433 0.8783 1.2278 8 7 3.4063 0.3373 2.1731 9 14 6.0050 0.8811 1.3816 10 1 6.4996 2.2814 1.3819 11 1 6.3979 0.2175 2.6507 12 1 6.5975 0.1472 0.2347 13 7 1.6524 2.0975 -1.2518 14 6 0.4352 2.6645 -1.3668 15 8 -0.3400 2.6320 -0.4337 16 6 0.0403 3.3326 -2.6425 17 8 0.8155 3.3647 -3.5762 18 7 -1.1772 3.8991 -2.7578 19 6 -1.5134 4.6047 -3.9182 20 6 -1.0323 4.1995 -5.1527 21 7 -1.3474 4.8618 -6.2499 22 6 -2.1251 5.9280 -6.2241 23 6 -2.6457 6.3991 -5.0364 24 6 -2.3468 5.7293 -3.8514 25 16 -2.9938 6.2855 -2.3096 26 6 -3.9805 7.7334 -2.7798 27 1 -0.3633 0.5140 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8900 32 1 3.8294 -0.0606 2.9501 33 1 2.2720 2.1232 -1.9978 34 1 -1.8203 3.8176 -2.0362 35 1 -0.3923 3.3320 -5.2178 36 1 -2.3568 6.4397 -7.1464 37 1 -3.2808 7.2726 -5.0258 38 1 -3.3364 8.4731 -3.2552 39 1 -4.7615 7.4300 -3.4770 40 1 -4.4367 8.1666 -1.8897 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000615214466.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:48 Heat of formation + Delta-G solvation = -30.084128 kcal Electronic energy + Delta-G solvation = -24601.212824 eV Core-core repulsion = 20928.600461 eV Total energy + Delta-G solvation = -3672.612363 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.109 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.11774 -39.76528 -38.24078 -35.72193 -35.01331 -32.71413 -32.42937 -31.03250 -30.34017 -29.36725 -27.32340 -25.18630 -24.28140 -23.31316 -22.42605 -20.46187 -19.54882 -18.93932 -18.19187 -17.54097 -16.74068 -16.30039 -15.86766 -15.65894 -15.55355 -15.01108 -14.61656 -14.53301 -14.28179 -14.00946 -13.91476 -13.68863 -13.35426 -13.04652 -12.76287 -12.72799 -12.15028 -11.62886 -11.45074 -11.32889 -11.18851 -11.01158 -10.86978 -10.84498 -10.54130 -10.38743 -10.28904 -9.72565 -9.71349 -9.18094 -9.14345 -8.80498 -8.58225 -8.07665 -7.86203 -6.18807 -4.28737 0.67162 0.80203 0.99229 1.76376 1.91234 2.51811 3.24776 3.29653 3.31889 3.45404 3.65041 3.95541 4.31099 4.33117 4.39775 4.59601 4.60959 4.66895 4.86051 5.02962 5.13375 5.17585 5.29442 5.39163 5.65180 5.91537 6.29510 6.34182 6.46616 6.52984 6.87177 6.92936 7.06781 7.11480 7.24767 7.43888 7.59680 7.68216 7.76524 7.83133 8.05981 8.39080 8.58015 8.82602 9.38121 10.86504 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.019828 B = 0.002906 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.816399 B = 9633.749548 C =10036.555798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.129 4.129 3 C 0.268 3.732 4 H 0.056 0.944 5 C -0.538 4.538 6 H 0.064 0.936 7 C 0.069 3.931 8 N -0.882 5.882 9 Si 0.904 3.096 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.275 1.275 13 N -0.665 5.665 14 C 0.496 3.504 15 O -0.525 6.525 16 C 0.510 3.490 17 O -0.503 6.503 18 N -0.643 5.643 19 C 0.117 3.883 20 C 0.119 3.881 21 N -0.470 5.470 22 C 0.098 3.902 23 C -0.171 4.171 24 C -0.076 4.076 25 S -0.083 6.083 26 C -0.149 4.149 27 H 0.034 0.966 28 H 0.027 0.973 29 H 0.052 0.948 30 H 0.035 0.965 31 H 0.104 0.896 32 H 0.266 0.734 33 H 0.402 0.598 34 H 0.425 0.575 35 H 0.178 0.822 36 H 0.160 0.840 37 H 0.139 0.861 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.678 11.892 -11.642 22.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.168 4.168 3 C 0.168 3.832 4 H 0.073 0.927 5 C -0.577 4.577 6 H 0.082 0.918 7 C -0.135 4.135 8 N -0.519 5.519 9 Si 0.731 3.269 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.200 1.200 13 N -0.314 5.314 14 C 0.274 3.726 15 O -0.403 6.403 16 C 0.293 3.707 17 O -0.376 6.376 18 N -0.291 5.291 19 C 0.013 3.987 20 C -0.042 4.042 21 N -0.180 5.180 22 C -0.061 4.061 23 C -0.198 4.198 24 C -0.199 4.199 25 S 0.159 5.841 26 C -0.317 4.317 27 H 0.053 0.947 28 H 0.046 0.954 29 H 0.071 0.929 30 H 0.054 0.946 31 H 0.122 0.878 32 H 0.076 0.924 33 H 0.237 0.763 34 H 0.264 0.736 35 H 0.195 0.805 36 H 0.177 0.823 37 H 0.156 0.844 38 H 0.106 0.894 39 H 0.105 0.895 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -14.154 11.073 -10.976 21.058 hybrid contribution 0.367 0.886 -0.361 1.025 sum -13.788 11.960 -11.338 21.487 Atomic orbital electron populations 1.21861 0.98294 0.98478 1.01028 1.21971 0.92648 0.99340 1.02840 1.19035 0.94806 0.89404 0.79995 0.92669 1.21167 0.90276 1.39588 1.06642 0.91783 1.24865 0.98843 0.94558 0.95213 1.69872 1.35381 1.37327 1.09308 0.86463 0.84487 0.78434 0.77503 1.20093 1.21087 1.20027 1.46474 1.13276 1.52332 1.19324 1.19436 0.84704 0.81604 0.86809 1.90760 1.51129 1.59238 1.39203 1.21151 0.81000 0.78657 0.89872 1.90730 1.50820 1.56081 1.39943 1.43203 1.16235 1.51538 1.18162 1.18356 0.99467 0.92500 0.88367 1.23139 0.96965 0.98977 0.85122 1.67855 1.12325 1.07402 1.30388 1.22671 0.92979 0.93054 0.97350 1.21954 1.03833 1.01796 0.92166 1.22191 1.02398 0.96727 0.98633 1.85864 1.57933 1.34003 1.06345 1.23754 1.02445 0.98587 1.06931 0.94653 0.95414 0.92904 0.94596 0.87798 0.92359 0.76324 0.73557 0.80541 0.82291 0.84370 0.89400 0.89453 0.86891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 8.51 37.16 0.32 -2.61 16 2 C -0.13 -3.02 5.45 -26.73 -0.15 -3.16 16 3 C 0.27 6.51 2.24 -69.08 -0.15 6.36 16 4 H 0.06 1.52 7.58 -51.93 -0.39 1.13 16 5 C -0.54 -13.93 8.73 -34.44 -0.30 -14.23 16 6 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.71 16 8 N -0.88 -23.94 11.29 55.43 0.63 -23.31 16 9 Si 0.90 20.34 29.54 -169.99 -5.02 15.32 16 10 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 11 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 12 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 13 N -0.67 -13.80 5.01 -55.41 -0.28 -14.07 16 14 C 0.50 9.61 6.45 -11.65 -0.08 9.53 16 15 O -0.53 -11.01 13.62 5.49 0.07 -10.94 16 16 C 0.51 8.55 7.74 -11.65 -0.09 8.46 16 17 O -0.50 -8.90 13.91 5.46 0.08 -8.82 16 18 N -0.64 -9.21 5.05 -10.06 -0.05 -9.27 16 19 C 0.12 1.57 6.34 -83.35 -0.53 1.04 16 20 C 0.12 1.65 9.88 -17.38 -0.17 1.48 16 21 N -0.47 -6.10 10.35 -13.18 -0.14 -6.23 16 22 C 0.10 0.97 11.17 -17.58 -0.20 0.77 16 23 C -0.17 -1.54 9.43 -39.26 -0.37 -1.91 16 24 C -0.08 -0.86 6.18 -38.45 -0.24 -1.09 16 25 S -0.08 -0.81 21.61 -107.50 -2.32 -3.13 16 26 C -0.15 -0.79 9.19 101.05 0.93 0.14 16 27 H 0.03 0.71 5.64 -51.93 -0.29 0.42 16 28 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.05 1.17 7.85 -51.93 -0.41 0.76 16 30 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.10 2.68 5.95 -51.93 -0.31 2.37 16 32 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 33 H 0.40 7.82 8.01 -40.82 -0.33 7.49 16 34 H 0.43 5.77 7.55 -40.82 -0.31 5.46 16 35 H 0.18 2.59 6.19 -52.49 -0.33 2.27 16 36 H 0.16 1.02 8.06 -52.49 -0.42 0.60 16 37 H 0.14 0.80 6.07 -52.49 -0.32 0.49 16 38 H 0.09 0.40 7.79 -51.92 -0.40 0.00 16 39 H 0.09 0.36 7.81 -51.92 -0.41 -0.04 16 40 H 0.11 0.46 8.14 -51.92 -0.42 0.04 16 LS Contribution 347.27 15.07 5.23 5.23 Total: -1.00 -29.38 347.27 -7.64 -37.02 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: -4.72 Total: 11.73 kcal Atomic # 6 Polarization: 7.60 SS G_CDS: -1.12 Total: 6.48 kcal Atomic # 7 Polarization: -53.05 SS G_CDS: 0.16 Total: -52.89 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: 0.15 Total: -19.76 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Atomic # 16 Polarization: -0.81 SS G_CDS: -2.32 Total: -3.13 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.38 -7.64 -37.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615214466.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.935 kcal (2) G-P(sol) polarization free energy of solvation -29.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds