Wall clock time and date at job start Tue Mar 31 2020 14:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47338 * 2 1 4 4 H 1.09001 * 109.47159 * 55.00175 * 3 2 1 5 5 C 1.50698 * 109.47340 * 175.00355 * 3 2 1 6 6 H 1.08001 * 120.00438 * 119.99921 * 5 3 2 7 7 C 1.37876 * 119.99699 * 300.00374 * 5 3 2 8 8 N 1.31513 * 120.00155 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99929 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47255 * 59.99410 * 9 7 5 11 11 H 1.48504 * 109.47084 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.46912 * 299.99480 * 9 7 5 13 13 N 1.46501 * 109.47055 * 295.00529 * 3 2 1 14 14 C 1.34769 * 120.00306 * 85.00026 * 13 3 2 15 15 O 1.21360 * 120.00149 * 359.97438 * 14 13 3 16 16 C 1.49322 * 120.00310 * 179.97438 * 14 13 3 17 17 O 1.21395 * 120.00030 * 0.02562 * 16 14 13 18 18 N 1.34777 * 120.00349 * 179.97438 * 16 14 13 19 19 C 1.39911 * 120.00123 * 175.59336 * 18 16 14 20 20 C 1.38544 * 120.53573 * 34.53757 * 19 18 16 21 21 N 1.31975 * 120.73941 * 179.97438 * 20 19 18 22 22 C 1.31997 * 121.98568 * 0.02562 * 21 20 19 23 23 C 1.37970 * 120.99570 * 0.02674 * 22 21 20 24 24 C 1.39366 * 119.13835 * 359.65708 * 23 22 21 25 25 S 1.76210 * 120.89503 * 180.33739 * 24 23 22 26 26 C 1.81405 * 102.99726 * 0.26812 * 25 24 23 27 27 H 1.09001 * 109.47093 * 59.99093 * 1 2 3 28 28 H 1.08997 * 109.47346 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46792 * 300.00233 * 1 2 3 30 30 H 1.09004 * 109.46799 * 240.00323 * 2 1 3 31 31 H 1.09000 * 109.47400 * 119.99999 * 2 1 3 32 32 H 0.97007 * 119.99921 * 180.02562 * 8 7 5 33 33 H 0.97006 * 119.99750 * 264.99272 * 13 3 2 34 34 H 0.97006 * 119.99850 * 355.58738 * 18 16 14 35 35 H 1.08001 * 119.63283 * 359.97438 * 20 19 18 36 36 H 1.07998 * 119.50201 * 179.97438 * 22 21 20 37 37 H 1.08000 * 120.42848 * 179.97438 * 23 22 21 38 38 H 1.09000 * 109.47152 * 299.99929 * 26 25 24 39 39 H 1.09001 * 109.47100 * 59.99887 * 26 25 24 40 40 H 1.09003 * 109.46677 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4443 0.1237 6 1 4.1473 1.8888 -0.6524 7 6 4.1433 0.8783 1.2278 8 7 3.4063 0.3373 2.1731 9 14 6.0050 0.8811 1.3816 10 1 6.4996 2.2814 1.3819 11 1 6.3979 0.2175 2.6507 12 1 6.5975 0.1472 0.2347 13 7 1.6524 2.0975 -1.2518 14 6 0.4352 2.6645 -1.3668 15 8 -0.3400 2.6320 -0.4337 16 6 0.0403 3.3326 -2.6425 17 8 0.8155 3.3647 -3.5762 18 7 -1.1772 3.8991 -2.7578 19 6 -1.5134 4.6047 -3.9182 20 6 -1.0323 4.1995 -5.1527 21 7 -1.3474 4.8618 -6.2499 22 6 -2.1251 5.9280 -6.2241 23 6 -2.6457 6.3991 -5.0364 24 6 -2.3468 5.7293 -3.8514 25 16 -2.9938 6.2855 -2.3096 26 6 -3.9805 7.7334 -2.7798 27 1 -0.3633 0.5140 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8900 32 1 3.8294 -0.0606 2.9501 33 1 2.2720 2.1232 -1.9978 34 1 -1.8203 3.8176 -2.0362 35 1 -0.3923 3.3320 -5.2178 36 1 -2.3568 6.4397 -7.1464 37 1 -3.2808 7.2726 -5.0258 38 1 -3.3364 8.4731 -3.2552 39 1 -4.7615 7.4300 -3.4770 40 1 -4.4367 8.1666 -1.8897 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000615214466.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:48 Heat of formation + Delta-G solvation = -50.372523 kcal Electronic energy + Delta-G solvation = -24602.092595 eV Core-core repulsion = 20928.600461 eV Total energy + Delta-G solvation = -3673.492134 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.109 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.31556 -40.98884 -39.67099 -37.28731 -36.42629 -34.34818 -33.52310 -32.83746 -31.34403 -29.81375 -29.19263 -26.59148 -25.19766 -24.95496 -23.71665 -21.96478 -21.27805 -20.30956 -19.18683 -18.66459 -18.26340 -17.52901 -17.37199 -17.17699 -16.65732 -16.44098 -16.00537 -15.67863 -15.37168 -15.07534 -14.97172 -14.61846 -14.54840 -14.36742 -13.88823 -13.74369 -13.50839 -13.43859 -13.20009 -12.99069 -12.72377 -12.65274 -12.31254 -12.15659 -12.11799 -11.60494 -11.51017 -11.42542 -11.12180 -10.71058 -10.58106 -10.54776 -9.87409 -9.73233 -8.67370 -8.18725 -6.35882 -0.31289 -0.06045 0.27239 0.43653 1.20506 1.32070 1.46443 1.47044 1.55209 2.08678 2.38375 2.61251 2.65924 3.11102 3.43308 3.49025 3.60652 3.82993 4.03440 4.27346 4.27762 4.44829 4.48540 4.54749 4.56000 4.70727 4.74700 4.86763 4.94285 5.01545 5.21592 5.33786 5.38348 5.53887 5.55605 5.63058 5.76259 5.85359 6.10761 6.38332 6.65081 6.71759 6.89116 7.06924 7.35801 8.86237 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.019828 B = 0.002906 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.816399 B = 9633.749548 C =10036.555798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.123 4.123 3 C 0.277 3.723 4 H 0.016 0.984 5 C -0.556 4.556 6 H 0.068 0.932 7 C 0.023 3.977 8 N -0.909 5.909 9 Si 0.968 3.032 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.267 1.267 13 N -0.668 5.668 14 C 0.498 3.502 15 O -0.542 6.542 16 C 0.519 3.481 17 O -0.515 6.515 18 N -0.629 5.629 19 C 0.087 3.913 20 C 0.103 3.897 21 N -0.494 5.494 22 C 0.104 3.896 23 C -0.159 4.159 24 C -0.073 4.073 25 S -0.127 6.127 26 C -0.136 4.136 27 H 0.039 0.961 28 H 0.049 0.951 29 H 0.036 0.964 30 H 0.040 0.960 31 H 0.079 0.921 32 H 0.267 0.733 33 H 0.409 0.591 34 H 0.428 0.572 35 H 0.159 0.841 36 H 0.198 0.802 37 H 0.179 0.821 38 H 0.102 0.898 39 H 0.106 0.894 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.867 13.947 -13.273 24.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.162 4.162 3 C 0.175 3.825 4 H 0.034 0.966 5 C -0.594 4.594 6 H 0.086 0.914 7 C -0.178 4.178 8 N -0.547 5.547 9 Si 0.793 3.207 10 H -0.198 1.198 11 H -0.208 1.208 12 H -0.192 1.192 13 N -0.318 5.318 14 C 0.277 3.723 15 O -0.421 6.421 16 C 0.301 3.699 17 O -0.390 6.390 18 N -0.276 5.276 19 C -0.016 4.016 20 C -0.056 4.056 21 N -0.205 5.205 22 C -0.055 4.055 23 C -0.185 4.185 24 C -0.196 4.196 25 S 0.114 5.886 26 C -0.304 4.304 27 H 0.059 0.941 28 H 0.068 0.932 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.098 0.902 32 H 0.077 0.923 33 H 0.244 0.756 34 H 0.267 0.733 35 H 0.176 0.824 36 H 0.215 0.785 37 H 0.196 0.804 38 H 0.120 0.880 39 H 0.125 0.875 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -15.375 13.146 -12.627 23.847 hybrid contribution 0.559 0.417 0.100 0.705 sum -14.816 13.564 -12.527 23.673 Atomic orbital electron populations 1.21717 0.96566 0.99738 1.00418 1.21824 0.94138 0.98481 1.01772 1.18655 0.94085 0.89606 0.80185 0.96635 1.21494 0.91221 1.39676 1.06992 0.91380 1.25669 1.03162 0.94136 0.94860 1.70002 1.37076 1.37882 1.09723 0.85458 0.79219 0.78434 0.77608 1.19807 1.20819 1.19200 1.46238 1.14193 1.52870 1.18476 1.19818 0.83889 0.80903 0.87657 1.90744 1.51500 1.59643 1.40257 1.20422 0.81904 0.79120 0.88452 1.90733 1.51465 1.56946 1.39819 1.42981 1.15094 1.50846 1.18720 1.18443 1.01561 0.94048 0.87509 1.22896 0.97628 0.99202 0.85910 1.67854 1.13781 1.08830 1.30008 1.23384 0.91144 0.91720 0.99282 1.22418 1.03117 1.02196 0.90781 1.22381 1.01266 0.95907 1.00012 1.86106 1.58957 1.36887 1.06624 1.23919 1.02167 0.96108 1.08228 0.94148 0.93159 0.94524 0.94084 0.90229 0.92334 0.75555 0.73262 0.82391 0.78482 0.80361 0.87956 0.87526 0.85387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.42 8.51 71.98 0.61 -4.80 16 2 C -0.12 -5.90 5.45 30.60 0.17 -5.73 16 3 C 0.28 13.91 2.24 44.24 0.10 14.01 16 4 H 0.02 0.91 7.58 -2.39 -0.02 0.89 16 5 C -0.56 -29.33 8.73 25.60 0.22 -29.10 16 6 H 0.07 3.45 7.74 -2.91 -0.02 3.43 16 7 C 0.02 1.21 5.29 84.65 0.45 1.65 16 8 N -0.91 -50.52 11.29 21.45 0.24 -50.28 16 9 Si 0.97 41.90 29.54 68.60 2.03 43.92 16 10 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 11 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 12 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 13 N -0.67 -28.57 5.01 -447.57 -2.24 -30.81 16 14 C 0.50 19.86 6.45 87.23 0.56 20.42 16 15 O -0.54 -23.49 13.62 -3.28 -0.04 -23.54 16 16 C 0.52 17.85 7.74 87.23 0.67 18.53 16 17 O -0.51 -18.75 13.91 -3.39 -0.05 -18.79 16 18 N -0.63 -18.34 5.05 -304.08 -1.54 -19.88 16 19 C 0.09 2.32 6.34 38.38 0.24 2.56 16 20 C 0.10 2.89 9.88 84.74 0.84 3.73 16 21 N -0.49 -12.28 10.35 -195.60 -2.03 -14.30 16 22 C 0.10 1.71 11.17 84.60 0.94 2.66 16 23 C -0.16 -2.29 9.43 22.48 0.21 -2.08 16 24 C -0.07 -1.50 6.18 23.00 0.14 -1.36 16 25 S -0.13 -2.26 21.61 -56.49 -1.22 -3.48 16 26 C -0.14 -0.91 9.19 113.37 1.04 0.13 16 27 H 0.04 1.65 5.64 -2.39 -0.01 1.64 16 28 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.04 1.65 7.85 -2.38 -0.02 1.63 16 30 H 0.04 1.88 8.14 -2.38 -0.02 1.86 16 31 H 0.08 4.23 5.95 -2.39 -0.01 4.22 16 32 H 0.27 14.11 8.31 -92.70 -0.77 13.34 16 33 H 0.41 16.32 8.01 -92.70 -0.74 15.57 16 34 H 0.43 11.86 7.55 -92.70 -0.70 11.16 16 35 H 0.16 4.89 6.19 -2.91 -0.02 4.87 16 36 H 0.20 1.63 8.06 -2.91 -0.02 1.60 16 37 H 0.18 1.08 6.07 -2.91 -0.02 1.07 16 38 H 0.10 0.45 7.79 -2.39 -0.02 0.44 16 39 H 0.11 0.36 7.81 -2.39 -0.02 0.35 16 40 H 0.13 0.55 8.14 -2.39 -0.02 0.53 16 Total: -1.00 -65.82 347.27 1.03 -64.80 By element: Atomic # 1 Polarization: 32.08 SS G_CDS: -0.33 Total: 31.75 kcal Atomic # 6 Polarization: 14.41 SS G_CDS: 6.21 Total: 20.61 kcal Atomic # 7 Polarization: -109.71 SS G_CDS: -5.56 Total: -115.27 kcal Atomic # 8 Polarization: -42.24 SS G_CDS: -0.09 Total: -42.33 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.92 kcal Atomic # 16 Polarization: -2.26 SS G_CDS: -1.22 Total: -3.48 kcal Total: -65.82 1.03 -64.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615214466.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.423 kcal (2) G-P(sol) polarization free energy of solvation -65.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds