Wall clock time and date at job start Tue Mar 31 2020 13:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52999 * 109.46753 * 2 1 4 4 C 1.52997 * 109.46696 * 119.99966 * 2 1 3 5 5 N 1.46498 * 109.47414 * 65.00187 * 4 2 1 6 6 C 1.46495 * 120.00036 * 264.54840 * 5 4 2 7 7 C 1.50697 * 109.47203 * 270.00095 * 6 5 4 8 8 H 1.07997 * 120.00286 * 359.97438 * 7 6 5 9 9 C 1.37882 * 119.99965 * 180.02562 * 7 6 5 10 10 N 1.31507 * 120.00180 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99884 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.47695 * 89.99418 * 11 9 7 13 13 H 1.48504 * 109.46781 * 209.99825 * 11 9 7 14 14 H 1.48505 * 109.46981 * 329.99384 * 11 9 7 15 15 C 1.34776 * 119.99975 * 84.54876 * 5 4 2 16 16 O 1.21367 * 119.99881 * 185.08827 * 15 5 4 17 17 C 1.49292 * 120.00011 * 5.08707 * 15 5 4 18 18 O 1.21361 * 119.99747 * 274.63756 * 17 15 5 19 19 C 1.47313 * 119.99862 * 94.63842 * 17 15 5 20 20 C 1.39969 * 120.16100 * 355.15802 * 19 17 15 21 21 C 1.37763 * 119.83651 * 180.25332 * 20 19 17 22 22 C 1.38625 * 120.16070 * 359.45635 * 21 20 19 23 23 Cl 1.73600 * 119.84088 * 180.27431 * 22 21 20 24 24 C 1.38622 * 120.32086 * 0.25628 * 22 21 20 25 25 C 1.37767 * 120.16135 * 0.02562 * 24 22 21 26 26 H 1.08998 * 109.46731 * 299.99866 * 1 2 3 27 27 H 1.08994 * 109.46632 * 60.00247 * 1 2 3 28 28 H 1.09000 * 109.47073 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47068 * 239.99769 * 2 1 3 30 30 H 1.09006 * 109.46551 * 179.97438 * 3 2 1 31 31 H 1.08994 * 109.47358 * 299.99870 * 3 2 1 32 32 H 1.08998 * 109.47392 * 60.00539 * 3 2 1 33 33 H 1.08996 * 109.47554 * 304.99786 * 4 2 1 34 34 H 1.09010 * 109.46785 * 185.00012 * 4 2 1 35 35 H 1.08999 * 109.47001 * 30.00262 * 6 5 4 36 36 H 1.09003 * 109.47232 * 150.00053 * 6 5 4 37 37 H 0.96998 * 120.00533 * 180.02562 * 10 9 7 38 38 H 1.08002 * 120.08013 * 0.02562 * 20 19 17 39 39 H 1.08001 * 119.92035 * 179.73369 * 21 20 19 40 40 H 1.08005 * 119.91494 * 180.02562 * 24 22 21 41 41 H 1.08000 * 120.08226 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6524 -2.1328 1.1906 6 6 0.4334 -2.5863 1.8646 7 6 0.7629 -2.9961 3.2768 8 1 1.7789 -2.9262 3.6363 9 6 -0.2325 -3.4614 4.1098 10 7 -1.4696 -3.5470 3.6720 11 14 0.1759 -3.9687 5.8606 12 1 0.0382 -2.7958 6.7608 13 1 -0.7568 -5.0391 6.2960 14 1 1.5710 -4.4747 5.9166 15 6 2.4175 -3.0142 0.5166 16 8 2.0500 -4.1639 0.3895 17 6 3.7169 -2.5763 -0.0737 18 8 3.7418 -2.0647 -1.1739 19 6 4.9689 -2.7653 0.6793 20 6 4.9345 -3.2611 1.9878 21 6 6.1090 -3.4302 2.6878 22 6 7.3235 -3.1213 2.0953 23 17 8.7990 -3.3444 2.9824 24 6 7.3657 -2.6355 0.7976 25 6 6.1989 -2.4558 0.0875 26 1 -0.3633 0.5138 0.8900 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 3.1301 1.4425 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6054 -0.2618 2.1370 34 1 3.1264 -0.6443 1.2952 35 1 -0.2951 -1.7757 1.8821 36 1 0.0164 -3.4380 1.3271 37 1 -2.1700 -3.8740 4.2580 38 1 3.9893 -3.5069 2.4489 39 1 6.0837 -3.8086 3.6990 40 1 8.3157 -2.3974 0.3422 41 1 6.2333 -2.0776 -0.9235 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000727104126.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:57 Heat of formation + Delta-G solvation = -75.367249 kcal Electronic energy + Delta-G solvation = -25386.654920 eV Core-core repulsion = 21677.742476 eV Total energy + Delta-G solvation = -3708.912444 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.00127 -40.21859 -39.28099 -38.01177 -37.53069 -35.45464 -34.24311 -32.54175 -32.23304 -30.05258 -28.02474 -27.51253 -26.72927 -24.91896 -23.93552 -22.84625 -21.52721 -20.03959 -19.01107 -18.58277 -18.17634 -17.73523 -17.31143 -16.60109 -16.25498 -16.08413 -15.76687 -15.50567 -15.38530 -14.87841 -14.75488 -14.55285 -14.43585 -14.21172 -13.86146 -13.52083 -13.46914 -13.10233 -12.99403 -12.76834 -12.72661 -12.62433 -12.57851 -12.52299 -12.22821 -12.17850 -11.93506 -11.87621 -11.63163 -11.56349 -10.61828 -10.52092 -10.26275 -9.96934 -9.61812 -8.21593 -6.35908 -0.83995 0.13821 0.82094 0.93023 1.26433 1.40658 1.42682 1.52336 1.81508 2.38953 2.44899 2.87455 3.10509 3.45104 3.68950 3.73777 3.81566 3.93671 4.03862 4.12796 4.15689 4.44968 4.48823 4.57737 4.76616 4.81293 4.82510 4.90517 4.92958 4.98746 4.99806 5.03307 5.08337 5.18061 5.24082 5.35036 5.42550 5.49675 5.53002 5.75363 5.84892 6.03763 6.39215 6.70386 6.94663 7.34542 8.86322 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.009364 B = 0.004883 C = 0.003614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2989.345997 B = 5733.268631 C = 7746.832616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.115 4.115 3 C -0.133 4.133 4 C 0.106 3.894 5 N -0.573 5.573 6 C 0.259 3.741 7 C -0.543 4.543 8 H 0.063 0.937 9 C 0.013 3.987 10 N -0.927 5.927 11 Si 0.963 3.037 12 H -0.265 1.265 13 H -0.286 1.286 14 H -0.265 1.265 15 C 0.475 3.525 16 O -0.566 6.566 17 C 0.411 3.589 18 O -0.431 6.431 19 C -0.176 4.176 20 C -0.057 4.057 21 C -0.121 4.121 22 C 0.002 3.998 23 Cl -0.049 7.049 24 C -0.113 4.113 25 C -0.034 4.034 26 H 0.059 0.941 27 H 0.068 0.932 28 H 0.028 0.972 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.094 0.906 34 H 0.081 0.919 35 H 0.038 0.962 36 H -0.001 1.001 37 H 0.267 0.733 38 H 0.121 0.879 39 H 0.154 0.846 40 H 0.176 0.824 41 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.784 8.547 -3.431 20.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.135 4.135 3 C -0.191 4.191 4 C -0.016 4.016 5 N -0.303 5.303 6 C 0.139 3.861 7 C -0.581 4.581 8 H 0.081 0.919 9 C -0.187 4.187 10 N -0.566 5.566 11 Si 0.788 3.212 12 H -0.190 1.190 13 H -0.212 1.212 14 H -0.190 1.190 15 C 0.260 3.740 16 O -0.447 6.447 17 C 0.284 3.716 18 O -0.304 6.304 19 C -0.178 4.178 20 C -0.075 4.075 21 C -0.140 4.140 22 C -0.025 4.025 23 Cl -0.019 7.019 24 C -0.131 4.131 25 C -0.052 4.052 26 H 0.078 0.922 27 H 0.087 0.913 28 H 0.047 0.953 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.112 0.888 34 H 0.100 0.900 35 H 0.056 0.944 36 H 0.017 0.983 37 H 0.076 0.924 38 H 0.139 0.861 39 H 0.172 0.828 40 H 0.193 0.807 41 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 18.534 8.181 -3.944 20.639 hybrid contribution -0.703 -0.876 0.994 1.500 sum 17.831 7.305 -2.950 19.494 Atomic orbital electron populations 1.21827 0.95167 1.00738 1.02294 1.21616 0.96532 0.98177 0.97126 1.21696 1.01326 0.93093 1.02996 1.21954 1.00219 0.79409 1.00035 1.48277 1.24921 1.08718 1.48408 1.19001 0.81501 0.94659 0.90953 1.21675 0.95141 1.44168 0.97144 0.91878 1.25798 0.94630 0.95153 1.03106 1.70049 1.01454 1.47054 1.38065 0.85471 0.78313 0.78261 0.79179 1.19040 1.21159 1.18978 1.21121 0.86831 0.86193 0.79817 1.90754 1.73353 1.20058 1.60510 1.22399 0.89235 0.73640 0.86285 1.90549 1.89000 1.31672 1.19158 1.20235 0.93682 1.07816 0.96026 1.21466 0.99200 0.93858 0.93003 1.21151 0.89857 1.01195 1.01750 1.21450 0.87851 0.99496 0.93703 1.98400 1.33162 1.95215 1.75169 1.21334 1.00134 0.99585 0.92082 1.21521 0.89261 0.93748 1.00700 0.92153 0.91324 0.95308 0.92108 0.91759 0.91302 0.91471 0.88774 0.90038 0.94402 0.98313 0.92444 0.86096 0.82825 0.80693 0.82007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.42 8.33 71.99 0.60 -3.82 16 2 C -0.12 -3.32 3.09 -10.79 -0.03 -3.35 16 3 C -0.13 -2.78 9.19 71.98 0.66 -2.12 16 4 C 0.11 3.45 4.65 86.38 0.40 3.85 16 5 N -0.57 -24.33 2.19 -827.94 -1.81 -26.14 16 6 C 0.26 13.47 4.28 85.63 0.37 13.84 16 7 C -0.54 -29.48 9.39 25.60 0.24 -29.24 16 8 H 0.06 3.29 7.81 -2.91 -0.02 3.26 16 9 C 0.01 0.69 5.46 84.66 0.46 1.16 16 10 N -0.93 -54.35 13.29 21.45 0.28 -54.06 16 11 Si 0.96 42.76 29.54 68.60 2.03 44.79 16 12 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 13 H -0.29 -12.67 7.11 99.48 0.71 -11.97 16 14 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 15 C 0.48 20.79 6.05 87.22 0.53 21.31 16 16 O -0.57 -29.94 16.65 -3.30 -0.05 -30.00 16 17 C 0.41 14.28 5.09 27.64 0.14 14.42 16 18 O -0.43 -14.96 15.91 -3.28 -0.05 -15.01 16 19 C -0.18 -4.94 5.88 -20.05 -0.12 -5.05 16 20 C -0.06 -1.61 9.46 22.58 0.21 -1.40 16 21 C -0.12 -2.73 9.81 22.25 0.22 -2.51 16 22 C 0.00 0.04 6.33 22.45 0.14 0.18 16 23 Cl -0.05 -0.79 28.95 -2.72 -0.08 -0.87 16 24 C -0.11 -1.84 9.81 22.25 0.22 -1.63 16 25 C -0.03 -0.70 9.60 22.58 0.22 -0.48 16 26 H 0.06 1.79 8.14 -2.39 -0.02 1.78 16 27 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.03 1.08 6.31 -2.39 -0.02 1.06 16 29 H 0.06 1.95 6.88 -2.39 -0.02 1.94 16 30 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 31 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.09 3.04 8.03 -2.39 -0.02 3.03 16 34 H 0.08 2.30 7.00 -2.38 -0.02 2.29 16 35 H 0.04 1.99 6.61 -2.39 -0.02 1.97 16 36 H 0.00 -0.08 7.36 -2.39 -0.02 -0.09 16 37 H 0.27 14.74 8.31 -92.71 -0.77 13.97 16 38 H 0.12 4.15 7.15 -2.91 -0.02 4.13 16 39 H 0.15 3.04 8.06 -2.91 -0.02 3.01 16 40 H 0.18 1.69 8.06 -2.91 -0.02 1.67 16 41 H 0.16 2.76 7.66 -2.91 -0.02 2.74 16 Total: -1.00 -68.53 364.20 5.61 -62.93 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: 1.04 Total: 13.21 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: 4.26 Total: 5.17 kcal Atomic # 7 Polarization: -78.68 SS G_CDS: -1.53 Total: -80.21 kcal Atomic # 8 Polarization: -44.90 SS G_CDS: -0.11 Total: -45.01 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Atomic # 17 Polarization: -0.79 SS G_CDS: -0.08 Total: -0.87 kcal Total: -68.53 5.61 -62.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727104126.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.442 kcal (2) G-P(sol) polarization free energy of solvation -68.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds