Wall clock time and date at job start Tue Mar 31 2020 14:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47464 * 2 1 4 4 N 1.46900 * 109.47317 * 119.99947 * 2 1 3 5 5 C 1.46900 * 111.00286 * 161.15685 * 4 2 1 6 6 C 1.50707 * 109.47045 * 288.05538 * 5 4 2 7 7 H 1.08002 * 119.99491 * 4.69762 * 6 5 4 8 8 C 1.37867 * 119.99905 * 184.69476 * 6 5 4 9 9 N 1.31520 * 120.00432 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 119.99939 * 180.02562 * 8 6 5 11 11 H 1.48492 * 109.46952 * 0.02562 * 10 8 6 12 12 H 1.48497 * 109.46847 * 120.00009 * 10 8 6 13 13 H 1.48499 * 109.47111 * 240.00049 * 10 8 6 14 14 C 1.46898 * 110.99865 * 285.11242 * 4 2 1 15 15 N 1.46500 * 109.47539 * 88.83975 * 14 4 2 16 16 N 1.40275 * 126.55713 * 281.49135 * 15 14 4 17 17 C 1.30428 * 107.71416 * 180.15977 * 16 15 14 18 18 C 1.47184 * 125.49539 * 179.85236 * 17 16 15 19 19 C 1.35075 * 125.28449 * 179.71695 * 18 17 16 20 20 C 1.37814 * 114.67205 * 180.29198 * 19 18 17 21 21 C 1.33713 * 115.09522 * 359.49236 * 20 19 18 22 22 S 1.75855 * 109.77986 * 0.48172 * 21 20 19 23 23 O 1.35145 * 109.01830 * 359.58668 * 17 16 15 24 24 C 1.34350 * 108.86216 * 0.26743 * 23 17 16 25 25 O 1.21701 * 126.23526 * 179.97438 * 24 23 17 26 26 H 1.09009 * 109.46834 * 319.76439 * 1 2 3 27 27 H 1.08996 * 109.47199 * 79.75753 * 1 2 3 28 28 H 1.08996 * 109.46965 * 199.76401 * 1 2 3 29 29 H 1.08999 * 109.47270 * 239.99400 * 2 1 3 30 30 H 1.08996 * 109.47511 * 167.30058 * 3 2 1 31 31 H 1.09008 * 109.46982 * 287.29835 * 3 2 1 32 32 H 1.08995 * 109.47446 * 47.29727 * 3 2 1 33 33 H 1.08998 * 109.47016 * 48.05329 * 5 4 2 34 34 H 1.08999 * 109.46999 * 168.06024 * 5 4 2 35 35 H 0.96998 * 120.00675 * 180.02562 * 9 8 6 36 36 H 1.08998 * 109.47394 * 328.83683 * 14 4 2 37 37 H 1.09008 * 109.46979 * 208.83624 * 14 4 2 38 38 H 1.07992 * 122.66629 * 0.02562 * 19 18 17 39 39 H 1.08008 * 122.44917 * 179.70970 * 20 19 18 40 40 H 1.07999 * 125.10518 * 180.25190 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 3.4189 -1.1079 1.0331 6 6 3.4898 -2.2554 0.0587 7 1 2.5967 -2.5882 -0.4494 8 6 4.6945 -2.8802 -0.1841 9 7 5.7819 -2.4752 0.4351 10 14 4.7825 -4.3020 -1.3924 11 1 3.4314 -4.5610 -1.9512 12 1 5.7160 -3.9576 -2.4948 13 1 5.2704 -5.5173 -0.6922 14 6 1.8581 0.1464 2.3944 15 7 0.5363 -0.0884 2.9809 16 7 -0.6834 0.4370 2.5294 17 6 -1.6225 -0.0046 3.3195 18 6 -3.0557 0.3093 3.2022 19 6 -4.0256 -0.1548 4.0198 20 6 -5.2970 0.2741 3.7056 21 6 -5.3753 1.0902 2.6493 22 16 -3.7714 1.3466 1.9752 23 8 -1.0684 -0.8016 4.2597 24 6 0.2584 -0.8562 4.0558 25 8 1.0631 -1.4832 4.7194 26 1 -0.3633 0.7846 0.6639 27 1 -0.3633 0.1827 -1.0112 28 1 -0.3633 -0.9671 0.3475 29 1 1.8933 -0.5139 -0.8899 30 1 3.1063 1.4508 0.2259 31 1 1.8731 1.8869 -0.9813 32 1 1.5042 2.0174 0.7552 33 1 4.0036 -0.2708 0.6518 34 1 3.8210 -1.4235 1.9958 35 1 6.6296 -2.9145 0.2640 36 1 1.9510 1.1963 2.1167 37 1 2.6288 -0.1064 3.1227 38 1 -3.8215 -0.8134 4.8510 39 1 -6.1661 -0.0241 4.2733 40 1 -6.2870 1.5235 2.2654 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000745437266.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:14 Heat of formation + Delta-G solvation = 60.515503 kcal Electronic energy + Delta-G solvation = -25323.620956 eV Core-core repulsion = 21654.937288 eV Total energy + Delta-G solvation = -3668.683668 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.109 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.14889 -38.42896 -38.05562 -37.48880 -35.47732 -32.86257 -32.47096 -31.00591 -29.51234 -27.28339 -26.75184 -25.30648 -24.63929 -23.04717 -22.26568 -22.08556 -19.85254 -19.10082 -18.47131 -17.47731 -17.07147 -16.36161 -16.20970 -15.90171 -15.36543 -15.14430 -14.87289 -14.25419 -14.11430 -13.83225 -13.37675 -13.14091 -13.04431 -12.81855 -12.76665 -12.58422 -12.21483 -12.01158 -11.69143 -11.49040 -11.21586 -11.18336 -10.92032 -10.79568 -10.69011 -10.63706 -10.50331 -9.93530 -9.92828 -9.64033 -9.33725 -8.88224 -8.52402 -8.39322 -7.51579 -6.06919 -4.08284 0.09289 0.90945 1.54022 1.71937 1.92996 2.46908 2.55718 2.65851 3.29790 3.37507 3.42387 4.13841 4.39717 4.63292 4.75041 4.81348 5.00092 5.14352 5.27445 5.29273 5.44505 5.50185 5.58965 5.69199 5.76170 5.82334 5.85279 5.96537 6.09436 6.13601 6.23732 6.38030 6.49034 6.76063 6.87137 7.13301 7.21227 7.52561 7.69348 7.80252 7.96008 8.07705 8.39468 8.97866 9.55837 11.03644 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.018597 B = 0.003357 C = 0.003200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.237155 B = 8337.937669 C = 8748.117393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.081 3.919 3 C -0.181 4.181 4 N -0.541 5.541 5 C 0.196 3.804 6 C -0.506 4.506 7 H 0.063 0.937 8 C 0.057 3.943 9 N -0.897 5.897 10 Si 0.899 3.101 11 H -0.272 1.272 12 H -0.285 1.285 13 H -0.283 1.283 14 C 0.299 3.701 15 N -0.426 5.426 16 N -0.237 5.237 17 C 0.289 3.711 18 C -0.142 4.142 19 C -0.083 4.083 20 C -0.140 4.140 21 C -0.208 4.208 22 S 0.207 5.793 23 O -0.270 6.270 24 C 0.609 3.391 25 O -0.479 6.479 26 H 0.077 0.923 27 H 0.043 0.957 28 H 0.050 0.950 29 H 0.093 0.907 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.052 0.948 33 H 0.001 0.999 34 H 0.037 0.963 35 H 0.262 0.738 36 H 0.085 0.915 37 H 0.110 0.890 38 H 0.152 0.848 39 H 0.149 0.851 40 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.808 11.397 4.043 24.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.027 4.027 3 C -0.240 4.240 4 N -0.267 5.267 5 C 0.072 3.928 6 C -0.544 4.544 7 H 0.082 0.918 8 C -0.145 4.145 9 N -0.536 5.536 10 Si 0.727 3.273 11 H -0.197 1.197 12 H -0.211 1.211 13 H -0.210 1.210 14 C 0.090 3.910 15 N -0.260 5.260 16 N -0.067 5.067 17 C 0.065 3.935 18 C -0.261 4.261 19 C -0.118 4.118 20 C -0.170 4.170 21 C -0.345 4.345 22 S 0.472 5.528 23 O -0.168 6.168 24 C 0.360 3.640 25 O -0.359 6.359 26 H 0.096 0.904 27 H 0.062 0.938 28 H 0.069 0.931 29 H 0.111 0.889 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.019 0.981 34 H 0.055 0.945 35 H 0.071 0.929 36 H 0.102 0.898 37 H 0.127 0.873 38 H 0.170 0.830 39 H 0.167 0.833 40 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -20.545 11.800 2.669 23.842 hybrid contribution 0.030 -1.572 0.995 1.861 sum -20.515 10.228 3.664 23.214 Atomic orbital electron populations 1.22197 0.95321 1.02713 1.00558 1.21679 0.94780 0.91780 0.94506 1.22469 1.01527 0.98501 1.01469 1.61813 1.25768 1.38287 1.00788 1.19830 0.79437 0.95313 0.98182 1.21114 0.94241 1.15411 1.23672 0.91832 1.24963 0.95590 0.97429 0.96488 1.69951 0.99310 1.41785 1.42593 0.86424 0.78048 0.82138 0.80726 1.19694 1.21071 1.20958 1.22343 0.76922 0.97721 0.94007 1.50668 1.05975 1.43253 1.26081 1.77489 0.90655 1.20184 1.18392 1.22284 0.92968 0.91963 0.86298 1.21199 0.89277 1.10177 1.05450 1.20490 0.91132 1.00207 1.00005 1.20038 0.97894 1.00157 0.98876 1.26127 1.01627 1.05146 1.01626 1.84569 0.97060 1.43813 1.27317 1.85139 1.22989 1.59677 1.48963 1.19319 0.79874 0.81555 0.83209 1.91222 1.45589 1.45785 1.53308 0.90432 0.93770 0.93092 0.88910 0.92178 0.92481 0.92891 0.98121 0.94539 0.92864 0.89759 0.87266 0.83042 0.83340 0.80949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 7.94 37.16 0.29 -2.17 16 2 C 0.08 1.51 2.75 -67.72 -0.19 1.32 16 3 C -0.18 -2.85 8.01 37.16 0.30 -2.55 16 4 N -0.54 -11.47 4.43 -231.97 -1.03 -12.50 16 5 C 0.20 4.94 4.59 -4.97 -0.02 4.92 16 6 C -0.51 -14.07 8.43 -34.44 -0.29 -14.36 16 7 H 0.06 1.78 7.53 -52.49 -0.40 1.39 16 8 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 9 N -0.90 -26.38 13.29 55.43 0.74 -25.64 16 10 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 11 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 13 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 14 C 0.30 5.47 6.06 -63.32 -0.38 5.09 16 15 N -0.43 -7.59 3.66 -68.29 -0.25 -7.84 16 16 N -0.24 -3.64 8.55 31.85 0.27 -3.37 16 17 C 0.29 4.10 8.11 -14.52 -0.12 3.98 16 18 C -0.14 -1.53 6.42 -37.08 -0.24 -1.77 16 19 C -0.08 -0.72 10.08 -40.86 -0.41 -1.13 16 20 C -0.14 -0.90 10.16 -41.32 -0.42 -1.32 16 21 C -0.21 -1.26 11.23 29.15 0.33 -0.93 16 22 S 0.21 1.74 23.30 -107.50 -2.50 -0.76 16 23 O -0.27 -4.42 10.70 -20.99 -0.22 -4.65 16 24 C 0.61 11.65 9.24 54.15 0.50 12.15 16 25 O -0.48 -10.62 17.78 -19.01 -0.34 -10.96 16 26 H 0.08 1.19 4.98 -51.92 -0.26 0.94 16 27 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.05 0.94 8.09 -51.93 -0.42 0.52 16 29 H 0.09 1.94 6.96 -51.93 -0.36 1.58 16 30 H 0.06 1.02 6.75 -51.93 -0.35 0.67 16 31 H 0.06 0.80 8.14 -51.92 -0.42 0.38 16 32 H 0.05 0.76 6.29 -51.93 -0.33 0.43 16 33 H 0.00 0.03 6.71 -51.93 -0.35 -0.32 16 34 H 0.04 1.00 7.61 -51.93 -0.40 0.61 16 35 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 36 H 0.08 1.35 4.98 -51.93 -0.26 1.09 16 37 H 0.11 2.07 7.22 -51.92 -0.37 1.70 16 38 H 0.15 1.19 8.06 -52.49 -0.42 0.77 16 39 H 0.15 0.60 8.06 -52.48 -0.42 0.17 16 40 H 0.17 0.56 8.06 -52.49 -0.42 0.14 16 LS Contribution 346.92 15.07 5.23 5.23 Total: -1.00 -32.13 346.92 -8.62 -40.74 By element: Atomic # 1 Polarization: 3.00 SS G_CDS: -4.74 Total: -1.74 kcal Atomic # 6 Polarization: 5.47 SS G_CDS: -0.75 Total: 4.73 kcal Atomic # 7 Polarization: -49.09 SS G_CDS: -0.27 Total: -49.36 kcal Atomic # 8 Polarization: -15.04 SS G_CDS: -0.56 Total: -15.61 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 16 Polarization: 1.74 SS G_CDS: -2.50 Total: -0.76 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.13 -8.62 -40.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745437266.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.257 kcal (2) G-P(sol) polarization free energy of solvation -32.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds