Wall clock time and date at job start Tue Mar 31 2020 14:05:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47030 * 2 1 4 4 N 1.46500 * 109.47395 * 239.99421 * 2 1 3 5 5 C 1.34779 * 119.99583 * 61.04593 * 4 2 1 6 6 O 1.21280 * 120.00156 * 359.97438 * 5 4 2 7 7 C 1.50696 * 119.99769 * 180.02562 * 5 4 2 8 8 F 1.39903 * 109.47090 * 180.02562 * 7 5 4 9 9 F 1.39900 * 109.47027 * 299.99447 * 7 5 4 10 10 F 1.39897 * 109.47522 * 59.99899 * 7 5 4 11 11 C 1.50708 * 109.46978 * 119.99743 * 2 1 3 12 12 O 1.20825 * 119.99846 * 263.85953 * 11 2 1 13 13 O 1.34232 * 119.99679 * 83.85458 * 11 2 1 14 14 C 1.45200 * 116.99651 * 185.09726 * 13 11 2 15 15 C 1.52997 * 109.47197 * 184.85473 * 14 13 11 16 16 C 1.50699 * 115.55061 * 297.78632 * 15 14 13 17 17 H 1.08000 * 119.99750 * 94.30690 * 16 15 14 18 18 C 1.37876 * 119.99982 * 274.03769 * 16 15 14 19 19 N 1.31514 * 120.00132 * 355.43930 * 18 16 15 20 20 Si 1.86799 * 120.00027 * 175.44340 * 18 16 15 21 21 H 1.48500 * 109.47232 * 59.99459 * 20 18 16 22 22 H 1.48500 * 109.47510 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.47226 * 299.99704 * 20 18 16 24 24 C 1.53004 * 117.49583 * 83.45670 * 15 14 13 25 25 C 1.52998 * 117.49989 * 152.11470 * 15 14 13 26 26 H 1.09004 * 109.47379 * 300.00277 * 1 2 3 27 27 H 1.09003 * 109.47146 * 60.00374 * 1 2 3 28 28 H 1.09003 * 109.47100 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46621 * 179.97438 * 3 2 1 30 30 H 1.09003 * 109.46847 * 299.99250 * 3 2 1 31 31 H 1.08996 * 109.47417 * 59.99927 * 3 2 1 32 32 H 0.96994 * 120.00329 * 241.04207 * 4 2 1 33 33 H 1.09007 * 109.47240 * 64.85162 * 14 13 11 34 34 H 1.09003 * 109.47173 * 304.86039 * 14 13 11 35 35 H 0.96997 * 119.99911 * 184.99980 * 19 18 16 36 36 H 1.09001 * 117.49233 * 215.00404 * 24 15 14 37 37 H 1.08994 * 117.50085 * 0.02562 * 24 15 14 38 38 H 1.09004 * 117.49823 * 359.97438 * 25 15 14 39 39 H 1.09002 * 117.49989 * 144.96931 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 1.7103 -0.2181 -2.4201 6 8 1.0283 0.7786 -2.5314 7 6 2.2122 -0.9289 -3.6505 8 9 1.7662 -0.2554 -4.7927 9 9 3.6109 -0.9502 -3.6387 10 9 1.7258 -2.2406 -3.6624 11 6 2.0323 -0.7104 1.2306 12 8 2.3392 -0.0755 2.2117 13 8 2.1387 -2.0485 1.2366 14 6 2.5201 -2.6737 2.4903 15 6 2.7072 -4.1768 2.2745 16 6 1.4777 -4.9280 1.8328 17 1 1.2991 -5.1009 0.7818 18 6 0.5838 -5.3994 2.7707 19 7 0.8480 -5.2728 4.0528 20 14 -1.0025 -6.2181 2.2205 21 1 -0.6836 -7.4119 1.3969 22 1 -1.7843 -6.6341 3.4125 23 1 -1.8005 -5.2595 1.4144 24 6 4.0572 -4.6499 1.7316 25 6 3.6880 -4.9060 3.1949 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8901 31 1 1.6767 1.9564 0.8899 32 1 2.5635 -1.4880 -1.1071 33 1 1.7386 -2.5076 3.2318 34 1 3.4548 -2.2383 2.8439 35 1 0.2556 -5.6679 4.7114 36 1 4.0560 -5.5044 1.0550 37 1 4.8122 -3.8903 1.5287 38 1 4.2003 -4.3148 3.9540 39 1 3.4437 -5.9289 3.4814 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000759540396.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:29 Heat of formation + Delta-G solvation = -243.290665 kcal Electronic energy + Delta-G solvation = -28792.134742 eV Core-core repulsion = 24093.374687 eV Total energy + Delta-G solvation = -4698.760054 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.118 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.52200 -48.04181 -48.01068 -41.04046 -39.72732 -37.14343 -36.02712 -35.54795 -32.30490 -32.03484 -27.83159 -27.60682 -27.24704 -25.48541 -24.04541 -21.80953 -21.22096 -20.01232 -19.56164 -19.31291 -18.95780 -18.79856 -17.66510 -16.74500 -16.30207 -16.16121 -15.44035 -15.38021 -14.81510 -14.72140 -14.70549 -14.66056 -14.40534 -14.12085 -14.11450 -13.99046 -13.70917 -13.61755 -13.24158 -12.72631 -12.46257 -12.32270 -12.12433 -12.03132 -11.73244 -11.55918 -11.02732 -10.99553 -10.72554 -10.60381 -10.37515 -10.11628 -10.10478 -9.76628 -9.60428 -9.03214 -8.54105 -8.31824 -6.13816 -4.21866 1.47845 1.54119 2.30602 2.84439 2.86624 3.24255 3.29875 3.32333 3.40062 3.82627 3.89515 4.31233 4.44358 4.68327 4.88767 5.13556 5.22356 5.32325 5.51262 5.54071 5.64593 5.79963 5.88585 5.96407 6.07821 6.10424 6.16611 6.35353 6.50434 6.62995 6.69318 6.91493 6.96998 7.21498 7.23711 7.41510 7.78097 8.01789 8.28336 8.79950 9.44728 10.93620 Molecular weight = 323.12amu Principal moments of inertia in cm(-1) A = 0.012854 B = 0.004249 C = 0.003960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2177.728156 B = 6587.830125 C = 7069.058373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.190 3.810 3 C -0.157 4.157 4 N -0.685 5.685 5 C 0.491 3.509 6 O -0.477 6.477 7 C 0.452 3.548 8 F -0.155 7.155 9 F -0.167 7.167 10 F -0.161 7.161 11 C 0.455 3.545 12 O -0.500 6.500 13 O -0.332 6.332 14 C 0.115 3.885 15 C 0.032 3.968 16 C -0.490 4.490 17 H 0.063 0.937 18 C 0.070 3.930 19 N -0.882 5.882 20 Si 0.892 3.108 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.275 1.275 24 C -0.207 4.207 25 C -0.136 4.136 26 H 0.080 0.920 27 H 0.092 0.908 28 H 0.078 0.922 29 H 0.065 0.935 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.423 0.577 33 H 0.074 0.926 34 H 0.045 0.955 35 H 0.263 0.737 36 H 0.082 0.918 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.900 9.602 -11.065 14.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.104 3.896 3 C -0.215 4.215 4 N -0.341 5.341 5 C 0.269 3.731 6 O -0.350 6.350 7 C 0.394 3.606 8 F -0.136 7.136 9 F -0.148 7.148 10 F -0.143 7.143 11 C 0.296 3.704 12 O -0.388 6.388 13 O -0.247 6.247 14 C 0.042 3.958 15 C 0.031 3.969 16 C -0.527 4.527 17 H 0.081 0.919 18 C -0.134 4.134 19 N -0.518 5.518 20 Si 0.719 3.281 21 H -0.201 1.201 22 H -0.213 1.213 23 H -0.200 1.200 24 C -0.244 4.244 25 C -0.174 4.174 26 H 0.099 0.901 27 H 0.110 0.890 28 H 0.097 0.903 29 H 0.084 0.916 30 H 0.109 0.891 31 H 0.104 0.896 32 H 0.261 0.739 33 H 0.092 0.908 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.100 0.900 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.421 10.459 -10.607 15.092 hybrid contribution -0.441 -1.106 -0.137 1.199 sum 1.980 9.352 -10.744 14.381 Atomic orbital electron populations 1.22270 0.90458 1.04843 1.04936 1.20472 0.97055 0.92723 0.79395 1.22181 1.02049 0.92214 1.05017 1.45964 1.52970 1.31212 1.03921 1.20196 0.82726 0.85953 0.84257 1.90807 1.35834 1.23367 1.84955 1.20200 0.76381 0.78171 0.85863 1.93264 1.88951 1.79894 1.51467 1.93275 1.28594 1.96259 1.96711 1.93313 1.87534 1.36729 1.96701 1.23177 0.75247 0.82945 0.89028 1.90665 1.44917 1.67899 1.35336 1.86512 1.78132 1.19035 1.41048 1.23033 0.98424 0.93293 0.81010 1.18789 0.89758 0.88004 1.00319 1.20325 1.03913 1.35445 0.93060 0.91891 1.25006 0.97933 0.95522 0.94894 1.69967 1.37996 1.43824 1.00046 0.86662 0.83461 0.79852 0.78103 1.20145 1.21253 1.20049 1.23044 1.00481 1.02918 0.97987 1.22513 1.02419 1.01797 0.90647 0.90118 0.88964 0.90305 0.91583 0.89098 0.89594 0.73919 0.90770 0.93716 0.92758 0.89977 0.91636 0.91762 0.88991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.12 8.40 37.16 0.31 -1.81 16 2 C 0.19 2.53 1.01 -132.97 -0.13 2.39 16 3 C -0.16 -1.85 7.90 37.16 0.29 -1.55 16 4 N -0.69 -8.31 5.04 -48.68 -0.25 -8.55 16 5 C 0.49 5.85 6.78 -10.99 -0.07 5.77 16 6 O -0.48 -6.38 12.82 5.56 0.07 -6.31 16 7 C 0.45 4.97 3.43 36.00 0.12 5.09 16 8 F -0.15 -1.78 16.92 2.25 0.04 -1.74 16 9 F -0.17 -1.75 17.30 2.25 0.04 -1.71 16 10 F -0.16 -1.86 17.30 2.25 0.04 -1.82 16 11 C 0.46 7.65 6.74 36.01 0.24 7.89 16 12 O -0.50 -9.42 15.74 -18.75 -0.30 -9.72 16 13 O -0.33 -6.34 9.35 -39.26 -0.37 -6.71 16 14 C 0.12 2.48 5.39 37.16 0.20 2.68 16 15 C 0.03 0.73 1.72 -155.66 -0.27 0.46 16 16 C -0.49 -12.54 8.73 -34.44 -0.30 -12.84 16 17 H 0.06 1.61 7.82 -52.49 -0.41 1.20 16 18 C 0.07 1.82 5.43 -17.82 -0.10 1.72 16 19 N -0.88 -23.75 12.60 55.43 0.70 -23.06 16 20 Si 0.89 20.30 29.54 -169.99 -5.02 15.28 16 21 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 22 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 24 C -0.21 -4.19 9.96 -26.69 -0.27 -4.45 16 25 C -0.14 -3.00 9.10 -26.69 -0.24 -3.24 16 26 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 27 H 0.09 1.12 6.24 -51.93 -0.32 0.79 16 28 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.09 1.04 6.09 -51.93 -0.32 0.72 16 31 H 0.09 0.99 7.88 -51.93 -0.41 0.58 16 32 H 0.42 4.92 7.93 -40.82 -0.32 4.59 16 33 H 0.07 1.76 8.14 -51.93 -0.42 1.34 16 34 H 0.04 0.91 7.93 -51.93 -0.41 0.49 16 35 H 0.26 6.83 8.32 -40.82 -0.34 6.49 16 36 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 37 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 38 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 39 H 0.09 2.17 8.13 -51.93 -0.42 1.75 16 LS Contribution 349.85 15.07 5.27 5.27 Total: -1.00 -27.67 349.85 -4.69 -32.37 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -4.71 Total: 4.58 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: -0.21 Total: 2.12 kcal Atomic # 7 Polarization: -32.06 SS G_CDS: 0.45 Total: -31.61 kcal Atomic # 8 Polarization: -22.14 SS G_CDS: -0.59 Total: -22.73 kcal Atomic # 9 Polarization: -5.39 SS G_CDS: 0.12 Total: -5.27 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -27.67 -4.69 -32.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759540396.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -210.926 kcal (2) G-P(sol) polarization free energy of solvation -27.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -238.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -243.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds