Wall clock time and date at job start Tue Mar 31 2020 14:15:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50694 * 120.00166 * 2 1 4 4 N 1.46897 * 109.47024 * 124.11098 * 3 2 1 5 5 C 1.46898 * 111.00233 * 298.82297 * 4 3 2 6 6 C 1.50702 * 109.47346 * 288.07193 * 5 4 3 7 7 H 1.07998 * 119.99512 * 355.74989 * 6 5 4 8 8 C 1.37875 * 119.99894 * 175.74887 * 6 5 4 9 9 N 1.31519 * 119.99590 * 179.97438 * 8 6 5 10 10 Si 1.86796 * 120.00151 * 0.02562 * 8 6 5 11 11 H 1.48495 * 109.47150 * 89.99830 * 10 8 6 12 12 H 1.48500 * 109.47153 * 210.00116 * 10 8 6 13 13 H 1.48496 * 109.47074 * 329.99728 * 10 8 6 14 14 C 1.46903 * 111.00018 * 62.77921 * 4 3 2 15 15 C 1.50705 * 109.46912 * 66.04366 * 14 4 3 16 16 O 1.21280 * 120.00428 * 0.02562 * 15 14 4 17 17 N 1.34779 * 119.99836 * 179.97438 * 15 14 4 18 18 N 1.40099 * 119.99891 * 179.97438 * 17 15 14 19 19 C 1.34773 * 120.00013 * 179.72887 * 18 17 15 20 20 O 1.21702 * 120.00049 * 359.97438 * 19 18 17 21 21 C 1.46581 * 119.99962 * 179.97438 * 19 18 17 22 22 C 1.36658 * 125.45828 * 179.97438 * 21 19 18 23 23 C 1.37468 * 113.29605 * 180.02562 * 22 21 19 24 24 C 1.33814 * 115.10337 * 359.97438 * 23 22 21 25 25 S 1.70619 * 110.95322 * 359.72899 * 24 23 22 26 26 H 1.07994 * 120.00447 * 0.02562 * 1 2 3 27 27 H 1.08008 * 119.99868 * 180.02562 * 1 2 3 28 28 H 1.08003 * 119.99894 * 180.02562 * 2 1 3 29 29 H 1.08998 * 109.47139 * 4.11158 * 3 2 1 30 30 H 1.09002 * 109.47121 * 244.11233 * 3 2 1 31 31 H 1.09001 * 109.47147 * 48.07211 * 5 4 3 32 32 H 1.09001 * 109.47006 * 168.06961 * 5 4 3 33 33 H 0.96996 * 119.99803 * 180.02562 * 9 8 6 34 34 H 1.08992 * 109.47131 * 306.04336 * 14 4 3 35 35 H 1.09001 * 109.47363 * 186.03905 * 14 4 3 36 36 H 0.97001 * 119.99800 * 359.72911 * 17 15 14 37 37 H 0.97001 * 120.00253 * 359.72960 * 18 17 15 38 38 H 1.08001 * 123.34989 * 359.97146 * 22 21 19 39 39 H 1.08007 * 122.44500 * 180.02562 * 23 22 21 40 40 H 1.08001 * 124.52040 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9809 1.3407 1.1467 5 6 2.2436 1.2493 2.4139 6 6 1.5111 2.5424 2.6634 7 1 1.6401 3.3750 1.9877 8 6 0.6762 2.6625 3.7540 9 7 0.0373 3.7912 3.9720 10 14 0.4537 1.2225 4.9230 11 1 1.4687 1.3012 6.0040 12 1 -0.9066 1.2724 5.5165 13 1 0.6221 -0.0507 4.1775 14 6 3.9900 0.2777 1.0468 15 6 4.8845 0.5438 -0.1365 16 8 4.6999 1.5228 -0.8282 17 7 5.8902 -0.3056 -0.4255 18 7 6.7215 -0.0585 -1.5258 19 6 7.7306 -0.9049 -1.8116 20 8 7.9200 -1.8836 -1.1135 21 6 8.5999 -0.6467 -2.9632 22 6 9.6516 -1.4272 -3.3534 23 6 10.2976 -0.9508 -4.4693 24 6 9.7939 0.1800 -4.9774 25 16 8.4518 0.7126 -4.0685 26 1 -0.5400 0.9352 -0.0004 27 1 -0.5400 -0.9354 0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3575 2.1322 0.0737 30 1 2.6338 1.3953 -0.9246 31 1 1.5265 0.4303 2.3588 32 1 2.9435 1.0651 3.2290 33 1 -0.5497 3.8758 4.7395 34 1 3.4933 -0.6838 0.9179 35 1 4.5886 0.2582 1.9576 36 1 6.0408 -1.0860 0.1306 37 1 6.5707 0.7218 -2.0821 38 1 9.9464 -2.3282 -2.8359 39 1 11.1489 -1.4530 -4.9047 40 1 10.1825 0.6857 -5.8491 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000794731713.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:11 Heat of formation + Delta-G solvation = 14.612335 kcal Electronic energy + Delta-G solvation = -24010.070353 eV Core-core repulsion = 20339.396175 eV Total energy + Delta-G solvation = -3670.674179 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.62461 -40.48774 -38.71834 -38.29109 -36.43749 -34.76262 -33.89896 -33.07590 -30.89287 -30.07858 -28.22446 -26.19923 -25.55297 -23.06152 -22.83137 -22.28188 -20.70943 -20.25825 -19.63762 -18.90966 -18.80620 -17.86939 -17.23090 -16.80028 -16.63353 -16.37734 -16.14877 -16.07095 -15.67840 -15.44558 -15.07505 -14.90341 -14.49576 -14.06953 -13.95568 -13.72431 -13.37600 -13.29509 -13.03834 -12.76451 -12.57313 -12.40580 -12.19329 -12.16807 -11.98395 -11.87343 -11.63004 -11.55099 -11.05393 -10.73117 -10.20280 -10.04815 -9.62497 -9.50575 -8.98295 -8.22483 -6.25342 -0.58386 0.40737 0.57812 0.89932 1.21238 1.38296 1.39084 1.41222 1.50490 1.51902 2.02519 2.38878 2.74846 3.11624 3.31391 3.45640 3.84459 4.03413 4.12898 4.14349 4.30387 4.36125 4.42414 4.52178 4.58845 4.93477 4.97997 4.98468 5.04123 5.16037 5.23070 5.32670 5.41123 5.55294 5.58875 5.68252 5.81814 6.04554 6.24943 6.38796 6.64269 6.67566 6.81275 7.18628 7.37351 8.94770 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.025818 B = 0.002387 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.244344 B =11727.846715 C =11879.827395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.195 4.195 3 C 0.089 3.911 4 N -0.526 5.526 5 C 0.171 3.829 6 C -0.508 4.508 7 H 0.028 0.972 8 C 0.006 3.994 9 N -0.953 5.953 10 Si 0.946 3.054 11 H -0.265 1.265 12 H -0.288 1.288 13 H -0.241 1.241 14 C 0.040 3.960 15 C 0.524 3.476 16 O -0.550 6.550 17 N -0.518 5.518 18 N -0.518 5.518 19 C 0.595 3.405 20 O -0.562 6.562 21 C -0.303 4.303 22 C -0.042 4.042 23 C -0.159 4.159 24 C -0.209 4.209 25 S 0.218 5.782 26 H 0.081 0.919 27 H 0.116 0.884 28 H 0.124 0.876 29 H 0.051 0.949 30 H 0.085 0.915 31 H 0.010 0.990 32 H 0.036 0.964 33 H 0.265 0.735 34 H 0.094 0.906 35 H 0.127 0.873 36 H 0.440 0.560 37 H 0.432 0.568 38 H 0.157 0.843 39 H 0.175 0.825 40 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.759 -14.285 -17.953 30.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.214 4.214 3 C -0.039 4.039 4 N -0.249 5.249 5 C 0.045 3.955 6 C -0.546 4.546 7 H 0.047 0.953 8 C -0.190 4.190 9 N -0.594 5.594 10 Si 0.769 3.231 11 H -0.190 1.190 12 H -0.214 1.214 13 H -0.164 1.164 14 C -0.092 4.092 15 C 0.311 3.689 16 O -0.424 6.424 17 N -0.269 5.269 18 N -0.265 5.265 19 C 0.383 3.617 20 O -0.442 6.442 21 C -0.424 4.424 22 C -0.077 4.077 23 C -0.189 4.189 24 C -0.347 4.347 25 S 0.485 5.515 26 H 0.099 0.901 27 H 0.134 0.866 28 H 0.142 0.858 29 H 0.069 0.931 30 H 0.103 0.897 31 H 0.028 0.972 32 H 0.054 0.946 33 H 0.074 0.926 34 H 0.112 0.888 35 H 0.145 0.855 36 H 0.284 0.716 37 H 0.274 0.726 38 H 0.174 0.826 39 H 0.192 0.808 40 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 18.891 -12.445 -17.959 28.884 hybrid contribution 0.082 -1.742 0.795 1.917 sum 18.973 -14.188 -17.164 29.255 Atomic orbital electron populations 1.23953 0.96147 1.01970 0.99386 1.23634 0.97043 0.99495 1.01262 1.21259 0.94214 0.94474 0.93943 1.61743 1.15297 1.44713 1.03108 1.20034 0.92742 0.95363 0.87389 1.21186 1.24988 0.98635 1.09816 0.95325 1.25846 0.94974 0.98707 0.99519 1.70073 1.31094 1.27904 1.30310 0.85740 0.77644 0.80512 0.79229 1.19030 1.21356 1.16397 1.22008 0.94539 0.96142 0.96519 1.21225 0.79602 0.81618 0.86446 1.90685 1.70983 1.28971 1.51810 1.44949 1.28045 1.29895 1.23991 1.44714 1.28047 1.29291 1.24452 1.17256 0.78693 0.81789 0.83951 1.90826 1.72123 1.29442 1.51762 1.24151 1.06784 1.06822 1.04677 1.21064 0.91740 0.99271 0.95608 1.20308 1.03982 0.97557 0.97034 1.25845 1.00967 1.01551 1.06301 1.83365 1.27615 1.22298 1.18198 0.90079 0.86552 0.85824 0.93079 0.89686 0.97197 0.94622 0.92634 0.88812 0.85505 0.71554 0.72587 0.82571 0.80773 0.78154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.68 14.32 67.78 0.97 -4.71 16 2 C -0.19 -6.36 7.45 25.65 0.19 -6.17 16 3 C 0.09 3.49 5.31 85.56 0.45 3.94 16 4 N -0.53 -21.20 4.39 -909.96 -4.00 -25.20 16 5 C 0.17 7.77 3.68 85.56 0.32 8.08 16 6 C -0.51 -29.21 9.07 25.60 0.23 -28.97 16 7 H 0.03 1.89 7.89 -2.91 -0.02 1.87 16 8 C 0.01 0.35 5.47 84.65 0.46 0.82 16 9 N -0.95 -59.99 13.96 21.45 0.30 -59.69 16 10 Si 0.95 42.93 27.55 68.60 1.89 44.82 16 11 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 12 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 13 H -0.24 -9.85 6.42 99.48 0.64 -9.21 16 14 C 0.04 1.16 5.27 85.56 0.45 1.61 16 15 C 0.52 15.21 7.65 87.66 0.67 15.88 16 16 O -0.55 -20.01 14.16 -3.03 -0.04 -20.06 16 17 N -0.52 -12.27 6.26 -173.53 -1.09 -13.35 16 18 N -0.52 -12.05 6.25 -176.46 -1.10 -13.15 16 19 C 0.59 13.85 7.90 86.42 0.68 14.53 16 20 O -0.56 -15.85 16.68 -4.36 -0.07 -15.92 16 21 C -0.30 -5.45 6.45 24.08 0.16 -5.29 16 22 C -0.04 -0.61 10.01 21.72 0.22 -0.39 16 23 C -0.16 -1.49 10.15 21.08 0.21 -1.27 16 24 C -0.21 -1.75 10.92 66.81 0.73 -1.02 16 25 S 0.22 2.76 22.16 -56.49 -1.25 1.51 16 26 H 0.08 2.93 7.84 -2.91 -0.02 2.91 16 27 H 0.12 3.03 8.06 -2.91 -0.02 3.00 16 28 H 0.12 3.31 6.76 -2.91 -0.02 3.29 16 29 H 0.05 2.38 6.99 -2.39 -0.02 2.36 16 30 H 0.09 3.28 5.84 -2.39 -0.01 3.27 16 31 H 0.01 0.45 5.52 -2.39 -0.01 0.44 16 32 H 0.04 1.53 7.45 -2.39 -0.02 1.51 16 33 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 34 H 0.09 2.18 6.27 -2.39 -0.02 2.17 16 35 H 0.13 3.12 7.86 -2.39 -0.02 3.11 16 36 H 0.44 8.77 8.00 -213.32 -1.71 7.07 16 37 H 0.43 9.62 7.11 -213.32 -1.52 8.10 16 38 H 0.16 2.17 8.06 -2.91 -0.02 2.15 16 39 H 0.17 0.68 8.06 -2.91 -0.02 0.66 16 40 H 0.20 0.46 8.06 -2.91 -0.02 0.43 16 Total: -1.00 -77.43 353.79 -1.81 -79.25 By element: Atomic # 1 Polarization: 26.96 SS G_CDS: -2.20 Total: 24.77 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: 5.75 Total: -2.97 kcal Atomic # 7 Polarization: -105.51 SS G_CDS: -5.89 Total: -111.40 kcal Atomic # 8 Polarization: -35.86 SS G_CDS: -0.12 Total: -35.97 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 1.89 Total: 44.82 kcal Atomic # 16 Polarization: 2.76 SS G_CDS: -1.25 Total: 1.51 kcal Total: -77.43 -1.81 -79.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794731713.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.860 kcal (2) G-P(sol) polarization free energy of solvation -77.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds