Wall clock time and date at job start Tue Mar 31 2020 13:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42899 * 109.47676 * 2 1 4 4 C 1.50702 * 109.47328 * 120.00177 * 2 1 3 5 5 O 1.21279 * 120.00233 * 93.54632 * 4 2 1 6 6 N 1.34782 * 119.99628 * 273.55689 * 4 2 1 7 7 C 1.46500 * 119.99395 * 184.38846 * 6 4 2 8 8 C 1.53008 * 109.46734 * 175.08649 * 7 6 4 9 9 C 1.50699 * 115.54534 * 65.20166 * 8 7 6 10 10 H 1.07999 * 119.99758 * 272.06246 * 9 8 7 11 11 C 1.37876 * 120.00216 * 92.07415 * 9 8 7 12 12 N 1.31510 * 119.99737 * 4.12860 * 11 9 8 13 13 Si 1.86797 * 120.00180 * 184.13808 * 11 9 8 14 14 H 1.48502 * 109.47153 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47276 * 119.99625 * 13 11 9 16 16 H 1.48505 * 109.46880 * 239.99369 * 13 11 9 17 17 C 1.53000 * 117.50147 * 279.53453 * 8 7 6 18 18 C 1.52993 * 117.49833 * 210.87108 * 8 7 6 19 19 C 1.50708 * 109.47097 * 239.99709 * 2 1 3 20 20 C 1.38237 * 119.98578 * 300.75199 * 19 2 1 21 21 C 1.38210 * 120.01614 * 179.97438 * 20 19 2 22 22 C 1.38358 * 119.98635 * 0.02562 * 21 20 19 23 23 Cl 1.73594 * 120.01818 * 180.02562 * 22 21 20 24 24 C 1.38353 * 119.96924 * 0.27522 * 22 21 20 25 25 C 1.38220 * 119.98890 * 359.42798 * 24 22 21 26 26 H 1.08996 * 109.47538 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47150 * 300.00371 * 1 2 3 28 28 H 1.09003 * 109.46933 * 59.99921 * 1 2 3 29 29 H 0.96703 * 114.00141 * 179.97438 * 3 2 1 30 30 H 0.97000 * 120.00173 * 4.38203 * 6 4 2 31 31 H 1.08989 * 109.47580 * 295.08499 * 7 6 4 32 32 H 1.09002 * 109.47481 * 55.09220 * 7 6 4 33 33 H 0.97000 * 120.00332 * 185.00332 * 12 11 9 34 34 H 1.09000 * 117.49620 * 359.97438 * 17 8 7 35 35 H 1.08996 * 117.49930 * 145.02049 * 17 8 7 36 36 H 1.09000 * 117.49632 * 214.97827 * 18 8 7 37 37 H 1.08995 * 117.50232 * 359.97438 * 18 8 7 38 38 H 1.08007 * 119.99468 * 359.97438 * 20 19 2 39 39 H 1.08000 * 120.01385 * 180.02562 * 21 20 19 40 40 H 1.08006 * 120.00707 * 179.69741 * 24 22 21 41 41 H 1.08000 * 119.99908 * 180.30146 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.2958 -1.8933 1.1827 6 7 2.1887 -0.0312 2.3841 7 6 2.7673 -0.6975 3.5535 8 6 2.9465 0.3192 4.6829 9 6 1.6735 0.9008 5.2417 10 1 1.2393 1.7816 4.7921 11 6 1.0633 0.3088 6.3271 12 7 1.6340 -0.7140 6.9252 13 14 -0.5739 0.9593 6.9480 14 1 -1.0006 2.1078 6.1089 15 1 -1.5950 -0.1163 6.8718 16 1 -0.4276 1.4038 8.3574 17 6 4.1737 1.2310 4.6245 18 6 4.1085 0.0994 5.6534 19 6 2.0323 -0.7105 -1.2305 20 6 1.6854 -2.0294 -1.4568 21 6 2.1453 -2.6814 -2.5853 22 6 2.9535 -2.0140 -3.4884 23 17 3.5311 -2.8320 -4.9064 24 6 3.3055 -0.6959 -3.2582 25 6 2.8399 -0.0431 -2.1324 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 2.9704 1.4235 0.0004 30 1 1.9183 0.8986 2.4399 31 1 2.1012 -1.4942 3.8843 32 1 3.7363 -1.1204 3.2884 33 1 1.1720 -1.1764 7.6419 34 1 4.8538 1.1062 3.7819 35 1 4.0606 2.2513 4.9908 36 1 3.9525 0.3760 6.6962 37 1 4.7451 -0.7696 5.4878 38 1 1.0548 -2.5504 -0.7515 39 1 1.8739 -3.7117 -2.7622 40 1 3.9404 -0.1759 -3.9603 41 1 3.1106 0.9873 -1.9550 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000816554157.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:25:17 Heat of formation + Delta-G solvation = -47.386357 kcal Electronic energy + Delta-G solvation = -24964.047298 eV Core-core repulsion = 21256.348197 eV Total energy + Delta-G solvation = -3707.699101 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.61133 -38.78831 -37.17087 -36.60613 -36.35878 -33.41199 -32.30562 -31.96857 -31.10675 -29.41664 -26.69260 -25.39413 -24.16495 -22.92593 -21.81205 -21.11949 -19.82370 -19.40839 -18.29723 -17.43645 -16.41269 -16.00684 -15.65526 -15.22205 -14.93372 -14.71340 -14.65398 -14.09609 -13.75856 -13.60323 -13.52778 -13.22416 -12.85151 -12.69456 -12.39815 -12.19704 -11.94128 -11.85389 -11.67429 -11.58884 -11.46692 -11.06036 -10.98490 -10.96637 -10.81109 -10.55233 -10.25334 -9.61815 -9.31328 -9.14173 -9.10257 -8.74129 -8.51782 -8.34809 -8.16284 -6.12495 -4.22219 0.92849 1.17369 1.94254 2.88113 3.22070 3.31473 3.33209 3.34111 3.70289 3.98927 4.32042 4.42485 4.63005 4.72978 4.99458 5.01456 5.14443 5.22177 5.31474 5.36163 5.49120 5.64120 5.67818 5.81316 5.96568 5.98554 6.05073 6.11414 6.28992 6.35871 6.38653 6.48003 6.62048 6.66324 6.76422 7.09426 7.11094 7.29983 7.33489 7.55477 7.76233 8.13361 8.28897 8.65549 8.80265 9.45418 10.94589 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.022330 B = 0.002887 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.596186 B = 9696.914045 C = 9993.324978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.161 3.839 3 O -0.542 6.542 4 C 0.481 3.519 5 O -0.544 6.544 6 N -0.690 5.690 7 C 0.161 3.839 8 C 0.019 3.981 9 C -0.498 4.498 10 H 0.061 0.939 11 C 0.073 3.927 12 N -0.875 5.875 13 Si 0.889 3.111 14 H -0.272 1.272 15 H -0.283 1.283 16 H -0.284 1.284 17 C -0.212 4.212 18 C -0.135 4.135 19 C -0.098 4.098 20 C -0.061 4.061 21 C -0.115 4.115 22 C -0.032 4.032 23 Cl -0.078 7.078 24 C -0.116 4.116 25 C -0.097 4.097 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.382 0.618 30 H 0.408 0.592 31 H 0.066 0.934 32 H 0.041 0.959 33 H 0.261 0.739 34 H 0.062 0.938 35 H 0.078 0.922 36 H 0.092 0.908 37 H 0.062 0.938 38 H 0.139 0.861 39 H 0.133 0.867 40 H 0.133 0.867 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.287 0.556 -18.648 18.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.116 3.884 3 O -0.348 6.348 4 C 0.264 3.736 5 O -0.423 6.423 6 N -0.339 5.339 7 C 0.039 3.961 8 C 0.019 3.981 9 C -0.536 4.536 10 H 0.079 0.921 11 C -0.131 4.131 12 N -0.511 5.511 13 Si 0.716 3.284 14 H -0.196 1.196 15 H -0.209 1.209 16 H -0.210 1.210 17 C -0.249 4.249 18 C -0.173 4.173 19 C -0.099 4.099 20 C -0.080 4.080 21 C -0.134 4.134 22 C -0.059 4.059 23 Cl -0.049 7.049 24 C -0.135 4.135 25 C -0.115 4.115 26 H 0.097 0.903 27 H 0.097 0.903 28 H 0.093 0.907 29 H 0.230 0.770 30 H 0.243 0.757 31 H 0.084 0.916 32 H 0.059 0.941 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.097 0.903 36 H 0.110 0.890 37 H 0.080 0.920 38 H 0.157 0.843 39 H 0.151 0.849 40 H 0.151 0.849 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 0.917 -0.315 -18.567 18.593 hybrid contribution -0.290 0.376 0.398 0.619 sum 0.627 0.060 -18.170 18.181 Atomic orbital electron populations 1.21764 0.89604 1.03540 1.04241 1.20197 0.96675 0.81656 0.89836 1.86590 1.27380 1.24162 1.96661 1.20952 0.79370 0.87906 0.85408 1.90682 1.51301 1.15240 1.85103 1.45992 1.61162 1.16129 1.10573 1.21089 0.95884 0.95592 0.83580 1.19048 0.89482 0.95208 0.94403 1.20394 1.07076 1.12788 1.13305 0.92121 1.24987 0.97357 0.95250 0.95512 1.70016 1.36483 1.20901 1.23723 0.86594 0.83989 0.79021 0.78763 1.19626 1.20925 1.21025 1.23054 1.03968 0.96181 1.01732 1.22448 1.01340 0.96973 0.96583 1.20185 0.98642 0.95021 0.96099 1.21022 0.98286 0.93357 0.95302 1.21057 0.97982 1.00509 0.93814 1.20973 1.00601 0.93799 0.90501 1.98361 1.87901 1.79218 1.39410 1.20947 1.01107 0.92881 0.98539 1.20914 0.96787 1.00305 0.93472 0.90304 0.90336 0.90655 0.76963 0.75689 0.91570 0.94098 0.92922 0.91909 0.90336 0.88998 0.91979 0.84333 0.84876 0.84950 0.84543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.60 8.63 37.16 0.32 -1.28 16 2 C 0.16 2.10 1.15 -92.92 -0.11 1.99 16 3 O -0.54 -6.28 11.33 -35.23 -0.40 -6.67 16 4 C 0.48 8.12 6.67 -10.98 -0.07 8.05 16 5 O -0.54 -10.81 14.62 5.56 0.08 -10.73 16 6 N -0.69 -12.45 5.36 -60.29 -0.32 -12.77 16 7 C 0.16 3.46 5.51 -4.04 -0.02 3.44 16 8 C 0.02 0.44 1.60 -155.66 -0.25 0.19 16 9 C -0.50 -12.51 8.64 -34.44 -0.30 -12.81 16 10 H 0.06 1.51 7.82 -52.49 -0.41 1.09 16 11 C 0.07 1.89 5.41 -17.82 -0.10 1.80 16 12 N -0.87 -23.74 12.06 55.43 0.67 -23.07 16 13 Si 0.89 20.18 29.54 -169.99 -5.02 15.16 16 14 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 15 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 16 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 17 C -0.21 -4.30 9.96 -26.69 -0.27 -4.57 16 18 C -0.14 -3.06 8.88 -26.70 -0.24 -3.29 16 19 C -0.10 -1.22 4.65 -104.62 -0.49 -1.71 16 20 C -0.06 -0.78 7.90 -39.59 -0.31 -1.09 16 21 C -0.11 -1.32 9.83 -39.55 -0.39 -1.71 16 22 C -0.03 -0.36 6.32 -39.49 -0.25 -0.61 16 23 Cl -0.08 -0.79 28.96 -51.86 -1.50 -2.29 16 24 C -0.12 -1.20 9.83 -39.55 -0.39 -1.59 16 25 C -0.10 -1.03 9.22 -39.59 -0.36 -1.40 16 26 H 0.08 0.90 7.35 -51.93 -0.38 0.52 16 27 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 28 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.38 3.45 8.04 45.56 0.37 3.81 16 30 H 0.41 7.02 7.80 -40.82 -0.32 6.70 16 31 H 0.07 1.61 8.14 -51.94 -0.42 1.19 16 32 H 0.04 0.87 8.09 -51.93 -0.42 0.45 16 33 H 0.26 6.81 8.32 -40.82 -0.34 6.47 16 34 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.08 1.59 8.14 -51.93 -0.42 1.16 16 36 H 0.09 2.26 7.76 -51.93 -0.40 1.86 16 37 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 38 H 0.14 1.81 6.87 -52.48 -0.36 1.45 16 39 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 40 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 41 H 0.14 1.16 6.57 -52.49 -0.35 0.82 16 LS Contribution 360.96 15.07 5.44 5.44 Total: -1.00 -28.64 360.96 -9.06 -37.70 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -4.79 Total: 11.83 kcal Atomic # 6 Polarization: -11.38 SS G_CDS: -3.22 Total: -14.59 kcal Atomic # 7 Polarization: -36.18 SS G_CDS: 0.35 Total: -35.84 kcal Atomic # 8 Polarization: -17.09 SS G_CDS: -0.32 Total: -17.41 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Atomic # 17 Polarization: -0.79 SS G_CDS: -1.50 Total: -2.29 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -28.64 -9.06 -37.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816554157.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.684 kcal (2) G-P(sol) polarization free energy of solvation -28.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds