Wall clock time and date at job start Tue Mar 31 2020 13:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42899 * 109.47676 * 2 1 4 4 C 1.50702 * 109.47328 * 120.00177 * 2 1 3 5 5 O 1.21279 * 120.00233 * 93.54632 * 4 2 1 6 6 N 1.34782 * 119.99628 * 273.55689 * 4 2 1 7 7 C 1.46500 * 119.99395 * 184.38846 * 6 4 2 8 8 C 1.53008 * 109.46734 * 175.08649 * 7 6 4 9 9 C 1.50699 * 115.54534 * 65.20166 * 8 7 6 10 10 H 1.07999 * 119.99758 * 272.06246 * 9 8 7 11 11 C 1.37876 * 120.00216 * 92.07415 * 9 8 7 12 12 N 1.31510 * 119.99737 * 4.12860 * 11 9 8 13 13 Si 1.86797 * 120.00180 * 184.13808 * 11 9 8 14 14 H 1.48502 * 109.47153 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47276 * 119.99625 * 13 11 9 16 16 H 1.48505 * 109.46880 * 239.99369 * 13 11 9 17 17 C 1.53000 * 117.50147 * 279.53453 * 8 7 6 18 18 C 1.52993 * 117.49833 * 210.87108 * 8 7 6 19 19 C 1.50708 * 109.47097 * 239.99709 * 2 1 3 20 20 C 1.38237 * 119.98578 * 300.75199 * 19 2 1 21 21 C 1.38210 * 120.01614 * 179.97438 * 20 19 2 22 22 C 1.38358 * 119.98635 * 0.02562 * 21 20 19 23 23 Cl 1.73594 * 120.01818 * 180.02562 * 22 21 20 24 24 C 1.38353 * 119.96924 * 0.27522 * 22 21 20 25 25 C 1.38220 * 119.98890 * 359.42798 * 24 22 21 26 26 H 1.08996 * 109.47538 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47150 * 300.00371 * 1 2 3 28 28 H 1.09003 * 109.46933 * 59.99921 * 1 2 3 29 29 H 0.96703 * 114.00141 * 179.97438 * 3 2 1 30 30 H 0.97000 * 120.00173 * 4.38203 * 6 4 2 31 31 H 1.08989 * 109.47580 * 295.08499 * 7 6 4 32 32 H 1.09002 * 109.47481 * 55.09220 * 7 6 4 33 33 H 0.97000 * 120.00332 * 185.00332 * 12 11 9 34 34 H 1.09000 * 117.49620 * 359.97438 * 17 8 7 35 35 H 1.08996 * 117.49930 * 145.02049 * 17 8 7 36 36 H 1.09000 * 117.49632 * 214.97827 * 18 8 7 37 37 H 1.08995 * 117.50232 * 359.97438 * 18 8 7 38 38 H 1.08007 * 119.99468 * 359.97438 * 20 19 2 39 39 H 1.08000 * 120.01385 * 180.02562 * 21 20 19 40 40 H 1.08006 * 120.00707 * 179.69741 * 24 22 21 41 41 H 1.08000 * 119.99908 * 180.30146 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.2958 -1.8933 1.1827 6 7 2.1887 -0.0312 2.3841 7 6 2.7673 -0.6975 3.5535 8 6 2.9465 0.3192 4.6829 9 6 1.6735 0.9008 5.2417 10 1 1.2393 1.7816 4.7921 11 6 1.0633 0.3088 6.3271 12 7 1.6340 -0.7140 6.9252 13 14 -0.5739 0.9593 6.9480 14 1 -1.0006 2.1078 6.1089 15 1 -1.5950 -0.1163 6.8718 16 1 -0.4276 1.4038 8.3574 17 6 4.1737 1.2310 4.6245 18 6 4.1085 0.0994 5.6534 19 6 2.0323 -0.7105 -1.2305 20 6 1.6854 -2.0294 -1.4568 21 6 2.1453 -2.6814 -2.5853 22 6 2.9535 -2.0140 -3.4884 23 17 3.5311 -2.8320 -4.9064 24 6 3.3055 -0.6959 -3.2582 25 6 2.8399 -0.0431 -2.1324 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 2.9704 1.4235 0.0004 30 1 1.9183 0.8986 2.4399 31 1 2.1012 -1.4942 3.8843 32 1 3.7363 -1.1204 3.2884 33 1 1.1720 -1.1764 7.6419 34 1 4.8538 1.1062 3.7819 35 1 4.0606 2.2513 4.9908 36 1 3.9525 0.3760 6.6962 37 1 4.7451 -0.7696 5.4878 38 1 1.0548 -2.5504 -0.7515 39 1 1.8739 -3.7117 -2.7622 40 1 3.9404 -0.1759 -3.9603 41 1 3.1106 0.9873 -1.9550 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000816554157.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:25:17 Heat of formation + Delta-G solvation = -64.587079 kcal Electronic energy + Delta-G solvation = -24964.793177 eV Core-core repulsion = 21256.348197 eV Total energy + Delta-G solvation = -3708.444980 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.72579 -39.92715 -38.56665 -37.91869 -37.23904 -34.94906 -33.90885 -33.26757 -31.95495 -30.35488 -28.33643 -27.24083 -25.25720 -23.78702 -23.04768 -22.69866 -21.35213 -20.86441 -19.38454 -18.63307 -17.91680 -17.17074 -16.86019 -16.66773 -16.45093 -16.10957 -15.79944 -15.49542 -14.99322 -14.65308 -14.54874 -14.43760 -14.32619 -13.73753 -13.65666 -13.44197 -13.32487 -13.20375 -12.93976 -12.84039 -12.78356 -12.50760 -12.38216 -12.33426 -12.00497 -11.84193 -11.75898 -11.37334 -10.99887 -10.64395 -10.39833 -10.05474 -9.97528 -9.87571 -9.61047 -8.10146 -6.23776 0.04175 0.32582 1.11308 1.40983 1.45332 1.53777 1.54345 2.16235 2.42929 2.66916 3.04644 3.17727 3.43881 3.49632 3.76294 3.83079 3.93594 4.07671 4.24293 4.36864 4.45799 4.55298 4.62528 4.64042 4.72069 4.72720 4.75963 4.97714 4.98398 5.03767 5.08576 5.18704 5.23014 5.31168 5.48210 5.56168 5.58459 5.73146 5.77074 5.77718 6.36529 6.41990 6.75088 6.84796 7.26816 7.46099 8.96652 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.022330 B = 0.002887 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.596186 B = 9696.914045 C = 9993.324978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.177 3.823 3 O -0.538 6.538 4 C 0.480 3.520 5 O -0.576 6.576 6 N -0.687 5.687 7 C 0.178 3.822 8 C 0.000 4.000 9 C -0.502 4.502 10 H 0.063 0.937 11 C 0.024 3.976 12 N -0.907 5.907 13 Si 0.946 3.054 14 H -0.261 1.261 15 H -0.287 1.287 16 H -0.286 1.286 17 C -0.178 4.178 18 C -0.149 4.149 19 C -0.112 4.112 20 C -0.077 4.077 21 C -0.122 4.122 22 C -0.039 4.039 23 Cl -0.070 7.070 24 C -0.114 4.114 25 C -0.093 4.093 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.094 0.906 29 H 0.394 0.606 30 H 0.413 0.587 31 H 0.026 0.974 32 H 0.041 0.959 33 H 0.258 0.742 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.126 0.874 39 H 0.142 0.858 40 H 0.156 0.844 41 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.551 2.289 -20.726 20.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.133 3.867 3 O -0.346 6.346 4 C 0.265 3.735 5 O -0.456 6.456 6 N -0.337 5.337 7 C 0.054 3.946 8 C 0.000 4.000 9 C -0.540 4.540 10 H 0.081 0.919 11 C -0.177 4.177 12 N -0.545 5.545 13 Si 0.773 3.227 14 H -0.185 1.185 15 H -0.213 1.213 16 H -0.212 1.212 17 C -0.215 4.215 18 C -0.187 4.187 19 C -0.113 4.113 20 C -0.095 4.095 21 C -0.141 4.141 22 C -0.065 4.065 23 Cl -0.041 7.041 24 C -0.133 4.133 25 C -0.111 4.111 26 H 0.096 0.904 27 H 0.090 0.910 28 H 0.113 0.887 29 H 0.245 0.755 30 H 0.250 0.750 31 H 0.045 0.955 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.108 0.892 35 H 0.101 0.899 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.144 0.856 39 H 0.160 0.840 40 H 0.174 0.826 41 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 1.183 1.451 -20.668 20.753 hybrid contribution -0.318 -0.185 0.980 1.047 sum 0.865 1.266 -19.688 19.747 Atomic orbital electron populations 1.21812 0.88912 1.03760 1.04856 1.19945 0.97064 0.81855 0.87876 1.86589 1.28731 1.22836 1.96439 1.21743 0.78110 0.87608 0.86036 1.90668 1.52366 1.16892 1.85709 1.45864 1.61451 1.16263 1.10105 1.20624 0.95048 0.94400 0.84505 1.19074 0.89415 0.96570 0.94963 1.20708 1.07848 1.12534 1.12910 0.91911 1.25683 1.00276 0.95617 0.96075 1.70135 1.37687 1.22261 1.24393 0.85687 0.80445 0.78529 0.78072 1.18500 1.21288 1.21240 1.23029 1.02091 0.95357 1.01037 1.22345 1.02107 0.98630 0.95649 1.20196 0.99758 0.95043 0.96339 1.21010 0.98926 0.93869 0.95726 1.21176 0.98164 1.01087 0.93682 1.21132 1.00426 0.94328 0.90660 1.98365 1.87731 1.79168 1.38831 1.21258 1.00761 0.92557 0.98703 1.21182 0.95665 1.01320 0.92886 0.90421 0.90997 0.88678 0.75474 0.75002 0.95547 0.94069 0.93283 0.89198 0.89930 0.91623 0.91390 0.85641 0.83981 0.82594 0.82090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 8.63 71.98 0.62 -2.45 16 2 C 0.18 4.34 1.15 -12.28 -0.01 4.33 16 3 O -0.54 -10.94 11.33 -148.98 -1.69 -12.63 16 4 C 0.48 15.97 6.67 87.66 0.58 16.55 16 5 O -0.58 -23.12 14.62 -3.03 -0.04 -23.16 16 6 N -0.69 -24.40 5.36 -463.05 -2.48 -26.88 16 7 C 0.18 7.72 5.51 86.38 0.48 8.20 16 8 C 0.00 0.02 1.60 -52.93 -0.08 -0.06 16 9 C -0.50 -25.14 8.64 25.60 0.22 -24.92 16 10 H 0.06 3.05 7.82 -2.91 -0.02 3.03 16 11 C 0.02 1.25 5.41 84.65 0.46 1.71 16 12 N -0.91 -50.39 12.06 21.45 0.26 -50.13 16 13 Si 0.95 41.63 29.54 68.60 2.03 43.66 16 14 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 15 H -0.29 -12.67 7.11 99.48 0.71 -11.97 16 16 H -0.29 -12.59 7.11 99.48 0.71 -11.89 16 17 C -0.18 -6.90 9.96 30.62 0.30 -6.60 16 18 C -0.15 -6.75 8.88 30.62 0.27 -6.48 16 19 C -0.11 -2.61 4.65 -19.86 -0.09 -2.70 16 20 C -0.08 -1.91 7.90 22.26 0.18 -1.74 16 21 C -0.12 -2.71 9.83 22.29 0.22 -2.49 16 22 C -0.04 -0.79 6.32 22.33 0.14 -0.65 16 23 Cl -0.07 -1.28 28.96 -2.72 -0.08 -1.36 16 24 C -0.11 -2.04 9.83 22.29 0.22 -1.82 16 25 C -0.09 -1.71 9.22 22.27 0.21 -1.50 16 26 H 0.08 1.75 7.35 -2.39 -0.02 1.73 16 27 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.39 5.80 8.04 -74.05 -0.60 5.20 16 30 H 0.41 13.69 7.80 -92.71 -0.72 12.97 16 31 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.04 1.76 8.09 -2.39 -0.02 1.74 16 33 H 0.26 13.85 8.32 -92.71 -0.77 13.08 16 34 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 35 H 0.08 3.15 8.14 -2.39 -0.02 3.13 16 36 H 0.07 3.30 7.76 -2.39 -0.02 3.28 16 37 H 0.07 2.94 8.14 -2.39 -0.02 2.92 16 38 H 0.13 3.37 6.87 -2.91 -0.02 3.35 16 39 H 0.14 2.73 8.06 -2.91 -0.02 2.71 16 40 H 0.16 2.00 8.06 -2.91 -0.02 1.98 16 41 H 0.16 2.10 6.57 -2.91 -0.02 2.08 16 Total: -1.00 -61.71 360.96 1.45 -60.26 By element: Atomic # 1 Polarization: 31.12 SS G_CDS: -0.25 Total: 30.87 kcal Atomic # 6 Polarization: -24.33 SS G_CDS: 3.71 Total: -20.63 kcal Atomic # 7 Polarization: -74.79 SS G_CDS: -2.22 Total: -77.01 kcal Atomic # 8 Polarization: -34.06 SS G_CDS: -1.73 Total: -35.79 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.66 kcal Atomic # 17 Polarization: -1.28 SS G_CDS: -0.08 Total: -1.36 kcal Total: -61.71 1.45 -60.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816554157.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.323 kcal (2) G-P(sol) polarization free energy of solvation -61.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds