Wall clock time and date at job start Tue Mar 31 2020 13:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42903 * 109.47397 * 2 1 4 4 C 1.50709 * 109.47089 * 240.00176 * 2 1 3 5 5 O 1.21285 * 119.99749 * 264.33615 * 4 2 1 6 6 N 1.34770 * 120.00009 * 84.33043 * 4 2 1 7 7 C 1.46497 * 120.00277 * 185.10403 * 6 4 2 8 8 C 1.52992 * 109.47562 * 175.31301 * 7 6 4 9 9 C 1.50703 * 115.54913 * 65.41549 * 8 7 6 10 10 H 1.07992 * 120.00126 * 265.56210 * 9 8 7 11 11 C 1.37882 * 119.99663 * 85.55924 * 9 8 7 12 12 N 1.31510 * 120.00310 * 2.23395 * 11 9 8 13 13 Si 1.86805 * 119.99767 * 182.23172 * 11 9 8 14 14 H 1.48499 * 109.47030 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.46915 * 120.00285 * 13 11 9 16 16 H 1.48500 * 109.47336 * 240.00145 * 13 11 9 17 17 C 1.52999 * 117.50057 * 279.74700 * 8 7 6 18 18 C 1.52996 * 117.50159 * 211.08543 * 8 7 6 19 19 C 1.50697 * 109.47220 * 120.00399 * 2 1 3 20 20 C 1.38243 * 119.98272 * 229.91102 * 19 2 1 21 21 C 1.38218 * 120.01548 * 179.97438 * 20 19 2 22 22 C 1.38361 * 119.98288 * 359.97438 * 21 20 19 23 23 Cl 1.73592 * 120.01322 * 179.97438 * 22 21 20 24 24 C 1.38357 * 119.97317 * 359.97438 * 22 21 20 25 25 C 1.38216 * 119.98583 * 0.02664 * 24 22 21 26 26 H 1.09004 * 109.46722 * 299.99622 * 1 2 3 27 27 H 1.09001 * 109.47282 * 59.99650 * 1 2 3 28 28 H 1.08996 * 109.46808 * 180.02562 * 1 2 3 29 29 H 0.96697 * 114.00011 * 180.02562 * 3 2 1 30 30 H 0.97000 * 120.00121 * 5.11219 * 6 4 2 31 31 H 1.09000 * 109.47479 * 295.31707 * 7 6 4 32 32 H 1.09004 * 109.46885 * 55.31487 * 7 6 4 33 33 H 0.96994 * 120.00323 * 185.00557 * 12 11 9 34 34 H 1.08993 * 117.49936 * 0.02562 * 17 8 7 35 35 H 1.09006 * 117.49762 * 145.02195 * 17 8 7 36 36 H 1.09004 * 117.50522 * 214.97730 * 18 8 7 37 37 H 1.09002 * 117.50234 * 359.97438 * 18 8 7 38 38 H 1.08002 * 119.99946 * 359.72178 * 20 19 2 39 39 H 1.07994 * 120.01317 * 179.97438 * 21 20 19 40 40 H 1.07998 * 120.00698 * 180.02562 * 24 22 21 41 41 H 1.07997 * 119.99259 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0324 -0.7104 -1.2306 5 8 2.3322 -1.8842 -1.1731 6 7 2.1483 -0.0414 -2.3947 7 6 2.5290 -0.7561 -3.6156 8 6 2.4749 0.2032 -4.8061 9 6 3.4721 1.3327 -4.7765 10 1 3.1882 2.2933 -4.3728 11 6 4.7471 1.1397 -5.2647 12 7 5.0797 -0.0162 -5.7964 13 14 6.0020 2.5203 -5.1711 14 1 5.3829 3.7096 -4.5328 15 1 7.1671 2.0763 -4.3644 16 1 6.4539 2.8723 -6.5412 17 6 1.1039 0.4873 -5.4228 18 6 2.1144 -0.3851 -6.1717 19 6 2.0324 -0.7105 1.2304 20 6 2.9897 -0.1143 2.0299 21 6 3.4505 -0.7651 3.1589 22 6 2.9531 -2.0133 3.4889 23 17 3.5318 -2.8317 4.9062 24 6 1.9942 -2.6090 2.6889 25 6 1.5342 -1.9571 1.5602 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 2.9704 1.4236 -0.0004 30 1 1.9797 0.9134 -2.4243 31 1 3.5415 -1.1451 -3.5081 32 1 1.8382 -1.5825 -3.7832 33 1 5.9951 -0.1772 -6.0735 34 1 0.2403 -0.0088 -4.9800 35 1 0.9233 1.4912 -5.8074 36 1 2.5980 0.0451 -7.0487 37 1 1.9161 -1.4557 -6.2220 38 1 3.3806 0.8584 1.7702 39 1 4.1986 -0.2996 3.7832 40 1 1.6052 -3.5830 2.9462 41 1 0.7855 -2.4217 0.9359 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000816554158.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:25:20 Heat of formation + Delta-G solvation = -47.351649 kcal Electronic energy + Delta-G solvation = -25009.776564 eV Core-core repulsion = 21302.078968 eV Total energy + Delta-G solvation = -3707.697596 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.58362 -38.77360 -37.15271 -36.58920 -36.31832 -33.36393 -32.36365 -32.00468 -31.08661 -29.39029 -26.66277 -25.40419 -24.18386 -22.87689 -21.80811 -21.15322 -19.79134 -19.40138 -18.30494 -17.46184 -16.40304 -15.90861 -15.73629 -15.20445 -14.88043 -14.75903 -14.60129 -14.08623 -13.78493 -13.71353 -13.47234 -13.03655 -12.85768 -12.76040 -12.38687 -12.24299 -11.92575 -11.81816 -11.64807 -11.62076 -11.47731 -11.03975 -10.98303 -10.96338 -10.78324 -10.55514 -10.28954 -9.65022 -9.28461 -9.11373 -9.09637 -8.71670 -8.54824 -8.33694 -8.15402 -6.12879 -4.22334 0.95353 1.18539 1.96414 2.91025 3.21630 3.31216 3.32890 3.34222 3.75485 4.01732 4.31610 4.42435 4.61124 4.73428 4.99529 5.01392 5.16305 5.19924 5.31461 5.34155 5.48965 5.60037 5.64713 5.79760 5.93966 5.96496 6.05721 6.09994 6.27880 6.35760 6.39633 6.48964 6.62455 6.65618 6.78679 7.06772 7.13765 7.32585 7.34959 7.48112 7.76443 8.16461 8.28653 8.68851 8.80272 9.45483 10.95074 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.016371 B = 0.003201 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.919960 B = 8746.495206 C = 9416.208296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.160 3.840 3 O -0.543 6.543 4 C 0.480 3.520 5 O -0.543 6.543 6 N -0.690 5.690 7 C 0.162 3.838 8 C 0.024 3.976 9 C -0.499 4.499 10 H 0.061 0.939 11 C 0.073 3.927 12 N -0.874 5.874 13 Si 0.889 3.111 14 H -0.272 1.272 15 H -0.284 1.284 16 H -0.284 1.284 17 C -0.211 4.211 18 C -0.142 4.142 19 C -0.092 4.092 20 C -0.096 4.096 21 C -0.112 4.112 22 C -0.033 4.033 23 Cl -0.077 7.077 24 C -0.113 4.113 25 C -0.067 4.067 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.384 0.616 30 H 0.407 0.593 31 H 0.069 0.931 32 H 0.040 0.960 33 H 0.261 0.739 34 H 0.064 0.936 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.063 0.937 38 H 0.135 0.865 39 H 0.133 0.867 40 H 0.133 0.867 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.014 -1.144 16.238 17.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.116 3.884 3 O -0.350 6.350 4 C 0.262 3.738 5 O -0.422 6.422 6 N -0.339 5.339 7 C 0.039 3.961 8 C 0.024 3.976 9 C -0.537 4.537 10 H 0.079 0.921 11 C -0.131 4.131 12 N -0.511 5.511 13 Si 0.717 3.283 14 H -0.196 1.196 15 H -0.210 1.210 16 H -0.210 1.210 17 C -0.248 4.248 18 C -0.181 4.181 19 C -0.093 4.093 20 C -0.114 4.114 21 C -0.131 4.131 22 C -0.059 4.059 23 Cl -0.049 7.049 24 C -0.132 4.132 25 C -0.085 4.085 26 H 0.094 0.906 27 H 0.094 0.906 28 H 0.096 0.904 29 H 0.234 0.766 30 H 0.243 0.757 31 H 0.087 0.913 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.097 0.903 36 H 0.105 0.895 37 H 0.082 0.918 38 H 0.153 0.847 39 H 0.151 0.849 40 H 0.151 0.849 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -7.246 -2.002 16.208 17.867 hybrid contribution 1.514 0.819 0.027 1.722 sum -5.731 -1.183 16.236 17.258 Atomic orbital electron populations 1.21762 0.89811 1.03329 1.04164 1.20226 0.96530 0.81819 0.89860 1.86578 1.27710 1.23984 1.96682 1.20950 0.79532 0.87938 0.85331 1.90697 1.49935 1.16396 1.85170 1.45982 1.66915 1.13090 1.07901 1.21046 0.99272 0.93099 0.82654 1.19032 0.92197 0.96599 0.89823 1.20405 0.95689 0.96180 1.41388 0.92077 1.24990 0.98465 0.95691 0.93945 1.70000 1.18326 1.22923 1.39807 0.86592 0.81501 0.82444 0.77811 1.19617 1.20985 1.21000 1.23022 0.93448 1.00202 1.08112 1.22475 1.01693 0.95957 0.97932 1.20158 0.97411 0.95626 0.96128 1.20886 0.96222 1.00173 0.94159 1.20951 1.00653 0.93554 0.97959 1.20948 0.99289 0.94711 0.90990 1.98361 1.88140 1.78992 1.39361 1.21021 0.96906 1.00490 0.94737 1.20903 0.99200 0.93426 0.94984 0.90591 0.90552 0.90386 0.76642 0.75740 0.91290 0.94201 0.92909 0.91736 0.90325 0.89516 0.91821 0.84725 0.84886 0.84877 0.84776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.50 8.51 37.16 0.32 -1.18 16 2 C 0.16 2.12 1.16 -92.92 -0.11 2.01 16 3 O -0.54 -6.65 11.55 -35.23 -0.41 -7.05 16 4 C 0.48 8.25 6.68 -10.98 -0.07 8.17 16 5 O -0.54 -11.09 15.42 5.55 0.09 -11.00 16 6 N -0.69 -12.62 5.42 -60.30 -0.33 -12.95 16 7 C 0.16 3.52 5.51 -4.05 -0.02 3.50 16 8 C 0.02 0.55 1.46 -155.66 -0.23 0.32 16 9 C -0.50 -12.48 8.61 -34.44 -0.30 -12.77 16 10 H 0.06 1.51 7.81 -52.49 -0.41 1.10 16 11 C 0.07 1.89 5.42 -17.82 -0.10 1.80 16 12 N -0.87 -23.76 12.67 55.43 0.70 -23.06 16 13 Si 0.89 20.09 29.54 -169.99 -5.02 15.07 16 14 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 15 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 16 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 17 C -0.21 -4.26 9.96 -26.69 -0.27 -4.53 16 18 C -0.14 -3.19 9.17 -26.70 -0.24 -3.44 16 19 C -0.09 -1.18 4.52 -104.62 -0.47 -1.66 16 20 C -0.10 -1.11 9.25 -39.59 -0.37 -1.47 16 21 C -0.11 -1.24 9.83 -39.54 -0.39 -1.63 16 22 C -0.03 -0.38 6.32 -39.49 -0.25 -0.63 16 23 Cl -0.08 -0.81 28.96 -51.86 -1.50 -2.31 16 24 C -0.11 -1.30 9.83 -39.55 -0.39 -1.69 16 25 C -0.07 -0.84 8.10 -39.59 -0.32 -1.16 16 26 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.08 0.81 6.89 -51.93 -0.36 0.45 16 29 H 0.38 3.95 7.65 45.56 0.35 4.30 16 30 H 0.41 7.07 7.73 -40.82 -0.32 6.75 16 31 H 0.07 1.72 8.14 -51.93 -0.42 1.30 16 32 H 0.04 0.85 8.09 -51.93 -0.42 0.43 16 33 H 0.26 6.84 8.32 -40.82 -0.34 6.50 16 34 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 36 H 0.09 2.09 8.14 -51.93 -0.42 1.67 16 37 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 38 H 0.14 1.27 6.40 -52.49 -0.34 0.93 16 39 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 40 H 0.13 1.29 8.06 -52.49 -0.42 0.86 16 41 H 0.13 1.59 6.96 -52.49 -0.37 1.23 16 LS Contribution 362.17 15.07 5.46 5.46 Total: -1.00 -29.01 362.17 -9.01 -38.02 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: -4.80 Total: 12.18 kcal Atomic # 6 Polarization: -11.16 SS G_CDS: -3.20 Total: -14.36 kcal Atomic # 7 Polarization: -36.38 SS G_CDS: 0.38 Total: -36.01 kcal Atomic # 8 Polarization: -17.73 SS G_CDS: -0.32 Total: -18.05 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -1.50 Total: -2.31 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -29.01 -9.01 -38.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816554158.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.329 kcal (2) G-P(sol) polarization free energy of solvation -29.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds