Wall clock time and date at job start Tue Mar 31 2020 13:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42903 * 109.47397 * 2 1 4 4 C 1.50709 * 109.47089 * 240.00176 * 2 1 3 5 5 O 1.21285 * 119.99749 * 264.33615 * 4 2 1 6 6 N 1.34770 * 120.00009 * 84.33043 * 4 2 1 7 7 C 1.46497 * 120.00277 * 185.10403 * 6 4 2 8 8 C 1.52992 * 109.47562 * 175.31301 * 7 6 4 9 9 C 1.50703 * 115.54913 * 65.41549 * 8 7 6 10 10 H 1.07992 * 120.00126 * 265.56210 * 9 8 7 11 11 C 1.37882 * 119.99663 * 85.55924 * 9 8 7 12 12 N 1.31510 * 120.00310 * 2.23395 * 11 9 8 13 13 Si 1.86805 * 119.99767 * 182.23172 * 11 9 8 14 14 H 1.48499 * 109.47030 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.46915 * 120.00285 * 13 11 9 16 16 H 1.48500 * 109.47336 * 240.00145 * 13 11 9 17 17 C 1.52999 * 117.50057 * 279.74700 * 8 7 6 18 18 C 1.52996 * 117.50159 * 211.08543 * 8 7 6 19 19 C 1.50697 * 109.47220 * 120.00399 * 2 1 3 20 20 C 1.38243 * 119.98272 * 229.91102 * 19 2 1 21 21 C 1.38218 * 120.01548 * 179.97438 * 20 19 2 22 22 C 1.38361 * 119.98288 * 359.97438 * 21 20 19 23 23 Cl 1.73592 * 120.01322 * 179.97438 * 22 21 20 24 24 C 1.38357 * 119.97317 * 359.97438 * 22 21 20 25 25 C 1.38216 * 119.98583 * 0.02664 * 24 22 21 26 26 H 1.09004 * 109.46722 * 299.99622 * 1 2 3 27 27 H 1.09001 * 109.47282 * 59.99650 * 1 2 3 28 28 H 1.08996 * 109.46808 * 180.02562 * 1 2 3 29 29 H 0.96697 * 114.00011 * 180.02562 * 3 2 1 30 30 H 0.97000 * 120.00121 * 5.11219 * 6 4 2 31 31 H 1.09000 * 109.47479 * 295.31707 * 7 6 4 32 32 H 1.09004 * 109.46885 * 55.31487 * 7 6 4 33 33 H 0.96994 * 120.00323 * 185.00557 * 12 11 9 34 34 H 1.08993 * 117.49936 * 0.02562 * 17 8 7 35 35 H 1.09006 * 117.49762 * 145.02195 * 17 8 7 36 36 H 1.09004 * 117.50522 * 214.97730 * 18 8 7 37 37 H 1.09002 * 117.50234 * 359.97438 * 18 8 7 38 38 H 1.08002 * 119.99946 * 359.72178 * 20 19 2 39 39 H 1.07994 * 120.01317 * 179.97438 * 21 20 19 40 40 H 1.07998 * 120.00698 * 180.02562 * 24 22 21 41 41 H 1.07997 * 119.99259 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0324 -0.7104 -1.2306 5 8 2.3322 -1.8842 -1.1731 6 7 2.1483 -0.0414 -2.3947 7 6 2.5290 -0.7561 -3.6156 8 6 2.4749 0.2032 -4.8061 9 6 3.4721 1.3327 -4.7765 10 1 3.1882 2.2933 -4.3728 11 6 4.7471 1.1397 -5.2647 12 7 5.0797 -0.0162 -5.7964 13 14 6.0020 2.5203 -5.1711 14 1 5.3829 3.7096 -4.5328 15 1 7.1671 2.0763 -4.3644 16 1 6.4539 2.8723 -6.5412 17 6 1.1039 0.4873 -5.4228 18 6 2.1144 -0.3851 -6.1717 19 6 2.0324 -0.7105 1.2304 20 6 2.9897 -0.1143 2.0299 21 6 3.4505 -0.7651 3.1589 22 6 2.9531 -2.0133 3.4889 23 17 3.5318 -2.8317 4.9062 24 6 1.9942 -2.6090 2.6889 25 6 1.5342 -1.9571 1.5602 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 2.9704 1.4236 -0.0004 30 1 1.9797 0.9134 -2.4243 31 1 3.5415 -1.1451 -3.5081 32 1 1.8382 -1.5825 -3.7832 33 1 5.9951 -0.1772 -6.0735 34 1 0.2403 -0.0088 -4.9800 35 1 0.9233 1.4912 -5.8074 36 1 2.5980 0.0451 -7.0487 37 1 1.9161 -1.4557 -6.2220 38 1 3.3806 0.8584 1.7702 39 1 4.1986 -0.2996 3.7832 40 1 1.6052 -3.5830 2.9462 41 1 0.7855 -2.4217 0.9359 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000816554158.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:25:20 Heat of formation + Delta-G solvation = -64.892039 kcal Electronic energy + Delta-G solvation = -25010.537172 eV Core-core repulsion = 21302.078968 eV Total energy + Delta-G solvation = -3708.458205 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.71223 -39.93939 -38.56418 -37.91329 -37.23856 -34.91499 -33.94496 -33.33209 -31.96195 -30.32412 -28.30313 -27.24569 -25.27496 -23.75671 -23.07265 -22.72794 -21.33652 -20.85688 -19.41502 -18.68455 -17.91224 -17.13200 -16.84909 -16.63086 -16.55709 -16.07651 -15.83165 -15.47330 -15.07167 -14.63552 -14.48661 -14.42106 -14.35964 -13.74267 -13.64505 -13.44488 -13.25447 -13.20323 -12.91149 -12.85541 -12.82606 -12.50324 -12.41953 -12.31923 -12.02760 -11.84920 -11.73978 -11.40821 -10.95290 -10.65103 -10.42558 -10.06434 -10.00479 -9.84935 -9.61978 -8.09899 -6.23353 0.03768 0.31021 1.10291 1.41757 1.46225 1.54791 1.55252 2.16634 2.43479 2.67500 3.05419 3.19384 3.43719 3.48248 3.73910 3.82700 3.91303 4.07074 4.23970 4.33484 4.45588 4.54757 4.62435 4.63923 4.72161 4.74261 4.77342 4.95069 4.99266 5.02799 5.09120 5.18039 5.21566 5.28722 5.45691 5.56144 5.57897 5.68869 5.75304 5.78057 6.36267 6.38600 6.75125 6.85433 7.28285 7.46961 8.97851 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.016371 B = 0.003201 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.919960 B = 8746.495206 C = 9416.208296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.174 3.826 3 O -0.541 6.541 4 C 0.479 3.521 5 O -0.577 6.577 6 N -0.687 5.687 7 C 0.179 3.821 8 C 0.004 3.996 9 C -0.501 4.501 10 H 0.064 0.936 11 C 0.025 3.975 12 N -0.908 5.908 13 Si 0.948 3.052 14 H -0.259 1.259 15 H -0.287 1.287 16 H -0.288 1.288 17 C -0.178 4.178 18 C -0.155 4.155 19 C -0.109 4.109 20 C -0.101 4.101 21 C -0.115 4.115 22 C -0.041 4.041 23 Cl -0.070 7.070 24 C -0.119 4.119 25 C -0.079 4.079 26 H 0.093 0.907 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.392 0.608 30 H 0.413 0.587 31 H 0.027 0.973 32 H 0.039 0.961 33 H 0.258 0.742 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.154 0.846 39 H 0.153 0.847 40 H 0.147 0.853 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.816 0.161 17.798 19.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.130 3.870 3 O -0.349 6.349 4 C 0.265 3.735 5 O -0.458 6.458 6 N -0.337 5.337 7 C 0.055 3.945 8 C 0.004 3.996 9 C -0.539 4.539 10 H 0.082 0.918 11 C -0.176 4.176 12 N -0.546 5.546 13 Si 0.774 3.226 14 H -0.183 1.183 15 H -0.213 1.213 16 H -0.214 1.214 17 C -0.215 4.215 18 C -0.194 4.194 19 C -0.110 4.110 20 C -0.119 4.119 21 C -0.134 4.134 22 C -0.067 4.067 23 Cl -0.041 7.041 24 C -0.137 4.137 25 C -0.097 4.097 26 H 0.111 0.889 27 H 0.095 0.905 28 H 0.101 0.899 29 H 0.243 0.757 30 H 0.250 0.750 31 H 0.045 0.955 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.108 0.892 35 H 0.103 0.897 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.172 0.828 39 H 0.171 0.829 40 H 0.165 0.835 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -8.062 -0.664 17.789 19.541 hybrid contribution 1.762 0.376 -0.418 1.850 sum -6.300 -0.288 17.371 18.480 Atomic orbital electron populations 1.21827 0.88182 1.04039 1.05041 1.20066 0.97570 0.81668 0.87701 1.86580 1.28635 1.23184 1.96473 1.21750 0.78192 0.87621 0.85972 1.90678 1.51146 1.18152 1.85789 1.45858 1.67166 1.13236 1.07426 1.20580 0.96900 0.93097 0.83904 1.19065 0.93757 0.96640 0.90184 1.20707 0.96137 0.96787 1.40287 0.91799 1.25688 1.00380 0.97485 0.94034 1.70121 1.18387 1.24752 1.41296 0.85666 0.79219 0.80337 0.77377 1.18320 1.21323 1.21405 1.23009 0.92844 1.00074 1.05551 1.22392 1.03264 0.96606 0.97089 1.20232 0.98412 0.96054 0.96340 1.21153 0.95664 1.01001 0.94032 1.21225 1.00765 0.93392 0.97990 1.21124 0.99277 0.95063 0.91277 1.98363 1.88008 1.78872 1.38834 1.21212 0.96938 1.01109 0.94488 1.21017 0.99605 0.93624 0.95453 0.88863 0.90475 0.89857 0.75679 0.75006 0.95475 0.94245 0.93319 0.89247 0.89750 0.91868 0.91265 0.82820 0.82946 0.83479 0.84763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.72 8.51 71.98 0.61 -2.11 16 2 C 0.17 4.33 1.16 -12.28 -0.01 4.32 16 3 O -0.54 -12.05 11.55 -148.98 -1.72 -13.77 16 4 C 0.48 16.18 6.68 87.66 0.59 16.76 16 5 O -0.58 -23.64 15.42 -3.04 -0.05 -23.69 16 6 N -0.69 -24.71 5.42 -463.07 -2.51 -27.22 16 7 C 0.18 7.86 5.51 86.38 0.48 8.33 16 8 C 0.00 0.19 1.46 -52.93 -0.08 0.11 16 9 C -0.50 -24.89 8.61 25.60 0.22 -24.67 16 10 H 0.06 3.07 7.81 -2.91 -0.02 3.05 16 11 C 0.02 1.28 5.42 84.66 0.46 1.74 16 12 N -0.91 -50.40 12.67 21.45 0.27 -50.13 16 13 Si 0.95 41.25 29.54 68.60 2.03 43.27 16 14 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 15 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 16 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 17 C -0.18 -6.89 9.96 30.62 0.30 -6.58 16 18 C -0.16 -6.97 9.17 30.62 0.28 -6.69 16 19 C -0.11 -2.65 4.52 -19.86 -0.09 -2.74 16 20 C -0.10 -2.12 9.25 22.27 0.21 -1.91 16 21 C -0.12 -2.32 9.83 22.29 0.22 -2.10 16 22 C -0.04 -0.88 6.32 22.33 0.14 -0.74 16 23 Cl -0.07 -1.35 28.96 -2.72 -0.08 -1.43 16 24 C -0.12 -2.61 9.83 22.29 0.22 -2.39 16 25 C -0.08 -1.89 8.10 22.26 0.18 -1.71 16 26 H 0.09 1.59 8.14 -2.38 -0.02 1.58 16 27 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.08 1.60 6.89 -2.39 -0.02 1.58 16 29 H 0.39 7.24 7.65 -74.06 -0.57 6.67 16 30 H 0.41 13.80 7.73 -92.71 -0.72 13.08 16 31 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.04 1.70 8.09 -2.38 -0.02 1.68 16 33 H 0.26 13.85 8.32 -92.71 -0.77 13.08 16 34 H 0.09 3.03 8.14 -2.39 -0.02 3.02 16 35 H 0.08 3.19 8.14 -2.38 -0.02 3.17 16 36 H 0.06 3.11 8.14 -2.39 -0.02 3.09 16 37 H 0.07 2.97 8.14 -2.39 -0.02 2.95 16 38 H 0.15 2.51 6.40 -2.91 -0.02 2.49 16 39 H 0.15 2.38 8.06 -2.91 -0.02 2.36 16 40 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 41 H 0.13 3.12 6.96 -2.91 -0.02 3.10 16 Total: -1.00 -62.04 362.17 1.45 -60.59 By element: Atomic # 1 Polarization: 32.96 SS G_CDS: -0.21 Total: 32.75 kcal Atomic # 6 Polarization: -24.09 SS G_CDS: 3.72 Total: -20.37 kcal Atomic # 7 Polarization: -75.11 SS G_CDS: -2.24 Total: -77.35 kcal Atomic # 8 Polarization: -35.69 SS G_CDS: -1.77 Total: -37.46 kcal Atomic # 14 Polarization: 41.25 SS G_CDS: 2.03 Total: 43.27 kcal Atomic # 17 Polarization: -1.35 SS G_CDS: -0.08 Total: -1.43 kcal Total: -62.04 1.45 -60.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816554158.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.303 kcal (2) G-P(sol) polarization free energy of solvation -62.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds