Wall clock time and date at job start Tue Mar 31 2020 14:15:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50698 * 119.99768 * 2 1 4 4 N 1.46498 * 109.46917 * 125.00517 * 3 2 1 5 5 C 1.46503 * 120.00251 * 264.46433 * 4 3 2 6 6 C 1.50702 * 109.47159 * 270.00099 * 5 4 3 7 7 H 1.08004 * 119.99859 * 359.97438 * 6 5 4 8 8 C 1.37880 * 120.00031 * 179.97438 * 6 5 4 9 9 N 1.31510 * 119.99999 * 359.97438 * 8 6 5 10 10 Si 1.86791 * 119.99820 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47508 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.47271 * 119.99957 * 10 8 6 13 13 H 1.48502 * 109.47268 * 239.99724 * 10 8 6 14 14 C 1.34779 * 120.00072 * 84.45899 * 4 3 2 15 15 O 1.21617 * 119.99901 * 185.91424 * 14 4 3 16 16 C 1.47317 * 119.99808 * 5.91820 * 14 4 3 17 17 C 1.39806 * 120.18277 * 54.39613 * 16 14 4 18 18 C 1.37630 * 119.95200 * 179.74325 * 17 16 14 19 19 N 1.48026 * 119.83969 * 180.25243 * 18 17 16 20 20 O 1.21796 * 119.99533 * 0.23515 * 19 18 17 21 21 O 1.21796 * 120.00062 * 180.23572 * 19 18 17 22 22 C 1.38918 * 120.32344 * 0.48919 * 18 17 16 23 23 F 1.35093 * 119.81124 * 179.76194 * 22 18 17 24 24 C 1.38248 * 120.36463 * 359.48579 * 22 18 17 25 25 C 1.38823 * 120.04031 * 0.27663 * 24 22 18 26 26 N 1.38884 * 120.15620 * 179.97438 * 25 24 22 27 27 H 1.08006 * 120.00477 * 359.97438 * 1 2 3 28 28 H 1.08008 * 120.00369 * 179.97438 * 1 2 3 29 29 H 1.07999 * 120.00193 * 180.02562 * 2 1 3 30 30 H 1.08996 * 109.47716 * 5.00646 * 3 2 1 31 31 H 1.08994 * 109.47496 * 245.00433 * 3 2 1 32 32 H 1.09002 * 109.46778 * 29.99571 * 5 4 3 33 33 H 1.09003 * 109.47412 * 149.99563 * 5 4 3 34 34 H 0.96994 * 120.00141 * 180.02562 * 9 8 6 35 35 H 1.08007 * 120.02193 * 359.97438 * 17 16 14 36 36 H 1.07994 * 119.97614 * 180.25278 * 24 22 18 37 37 H 0.96991 * 120.00408 * 355.04272 * 26 25 24 38 38 H 0.97003 * 119.99750 * 175.04928 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9937 1.3318 1.1314 5 6 2.6006 1.9740 2.3881 6 6 2.9954 3.4280 2.3543 7 1 3.4901 3.8331 1.4839 8 6 2.7250 4.2410 3.4345 9 7 2.1222 3.7479 4.4941 10 14 3.2151 6.0430 3.3929 11 1 3.8735 6.3472 2.0970 12 1 2.0039 6.8891 3.5427 13 1 4.1570 6.3258 4.5056 14 6 4.2113 0.7656 1.0161 15 8 4.9420 0.6921 1.9856 16 6 4.6572 0.2358 -0.2842 17 6 4.6447 1.0536 -1.4180 18 6 5.0673 0.5553 -2.6294 19 7 5.0583 1.4251 -3.8271 20 8 4.6817 2.5799 -3.7382 21 8 5.4276 0.9859 -4.9014 22 6 5.4975 -0.7614 -2.7345 23 9 5.9055 -1.2412 -3.9297 24 6 5.5157 -1.5816 -1.6218 25 6 5.0974 -1.0932 -0.3915 26 7 5.1143 -1.9153 0.7278 27 1 -0.5401 0.9353 0.0004 28 1 -0.5401 -0.9353 -0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3586 2.1317 0.0897 31 1 2.6211 1.4027 -0.9313 32 1 1.5209 1.8936 2.5149 33 1 3.1020 1.4805 3.2207 34 1 1.9316 4.3199 5.2539 35 1 4.3073 2.0768 -1.3426 36 1 5.8552 -2.6030 -1.7099 37 1 5.3498 -2.8519 0.6382 38 1 4.8903 -1.5528 1.5992 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000816803277.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:19 Heat of formation + Delta-G solvation = -48.047198 kcal Electronic energy + Delta-G solvation = -27604.608962 eV Core-core repulsion = 23365.004486 eV Total energy + Delta-G solvation = -4239.604476 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.111 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.44082 -43.18535 -41.76565 -39.65257 -37.64245 -37.45573 -36.10280 -35.16643 -33.78045 -32.57237 -31.45580 -29.46825 -27.30187 -26.83832 -25.78538 -24.54777 -23.47356 -21.55777 -20.99493 -19.99828 -19.60156 -19.32514 -18.71287 -18.69343 -18.53981 -17.98279 -17.49553 -16.96766 -16.69454 -16.41667 -16.31117 -16.07332 -15.46454 -15.13298 -14.91387 -14.42200 -14.32341 -14.18861 -14.10006 -13.41719 -13.35707 -13.11150 -12.92622 -12.69273 -12.63471 -12.34611 -12.29091 -12.27536 -12.26815 -12.24087 -11.68009 -11.00257 -10.65975 -10.52592 -10.27546 -9.61400 -9.32900 -8.24674 -6.38321 -1.23779 -0.57975 0.19952 0.30467 1.23661 1.37182 1.38790 1.45322 1.52275 2.00729 2.16999 2.23000 2.40055 2.61987 3.04967 3.07367 3.25390 3.53926 3.78106 3.96641 4.03408 4.14543 4.27744 4.31194 4.36229 4.41296 4.74481 4.90336 4.97487 4.98861 5.19988 5.27931 5.43620 5.63458 5.71891 5.82199 5.87179 6.02131 6.43281 6.48735 6.55334 6.70349 7.11002 7.33982 8.82546 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.012961 B = 0.004255 C = 0.003875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2159.855470 B = 6579.543945 C = 7224.218911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.184 4.184 3 C 0.126 3.874 4 N -0.582 5.582 5 C 0.263 3.737 6 C -0.546 4.546 7 H 0.054 0.946 8 C 0.016 3.984 9 N -0.923 5.923 10 Si 0.959 3.041 11 H -0.269 1.269 12 H -0.271 1.271 13 H -0.281 1.281 14 C 0.559 3.441 15 O -0.573 6.573 16 C -0.218 4.218 17 C 0.052 3.948 18 C -0.160 4.160 19 N 0.047 4.953 20 O -0.201 6.201 21 O -0.173 6.173 22 C 0.232 3.768 23 F -0.102 7.102 24 C -0.212 4.212 25 C 0.345 3.655 26 N -0.813 5.813 27 H 0.099 0.901 28 H 0.120 0.880 29 H 0.114 0.886 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.026 0.974 33 H 0.012 0.988 34 H 0.267 0.733 35 H 0.157 0.843 36 H 0.207 0.793 37 H 0.429 0.571 38 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.267 -15.726 -12.051 19.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.203 4.203 3 C 0.004 3.996 4 N -0.310 5.310 5 C 0.143 3.857 6 C -0.584 4.584 7 H 0.072 0.928 8 C -0.184 4.184 9 N -0.563 5.563 10 Si 0.784 3.216 11 H -0.193 1.193 12 H -0.197 1.197 13 H -0.207 1.207 14 C 0.347 3.653 15 O -0.454 6.454 16 C -0.227 4.227 17 C 0.031 3.969 18 C -0.249 4.249 19 N 0.558 4.442 20 O -0.407 6.407 21 O -0.387 6.387 22 C 0.210 3.790 23 F -0.079 7.079 24 C -0.236 4.236 25 C 0.225 3.775 26 N -0.346 5.346 27 H 0.117 0.883 28 H 0.138 0.862 29 H 0.132 0.868 30 H 0.102 0.898 31 H 0.107 0.893 32 H 0.044 0.956 33 H 0.030 0.970 34 H 0.076 0.924 35 H 0.174 0.826 36 H 0.224 0.776 37 H 0.264 0.736 38 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 2.550 -16.111 -10.795 19.560 hybrid contribution 0.155 1.349 0.160 1.367 sum 2.705 -14.763 -10.635 18.395 Atomic orbital electron populations 1.24089 0.95414 1.03116 0.97552 1.23210 0.96770 0.97775 1.02572 1.20958 0.92668 0.97135 0.88886 1.48130 1.13859 1.53587 1.15421 1.18838 0.94835 0.91231 0.80817 1.21728 1.39206 0.95349 1.02149 0.92799 1.25711 0.94792 1.03140 0.94745 1.70025 1.42282 1.37688 1.06271 0.85484 0.78267 0.79635 0.78177 1.19338 1.19656 1.20693 1.18075 0.81630 0.78099 0.87461 1.90771 1.54717 1.59427 1.40518 1.19198 1.14634 0.95513 0.93400 1.20582 0.88065 1.00575 0.87629 1.20652 1.25146 0.92155 0.86903 1.43434 0.97398 1.01132 1.02281 1.94562 1.51304 1.02490 1.92314 1.94533 1.50037 1.78257 1.15871 1.17072 0.91422 0.88114 0.82430 1.91666 1.86236 1.87595 1.42437 1.20680 1.11624 1.03670 0.87637 1.17512 0.84189 0.87409 0.88353 1.42859 1.70951 1.13130 1.07703 0.88270 0.86152 0.86769 0.89778 0.89343 0.95609 0.97011 0.92361 0.82598 0.77610 0.73639 0.75408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.62 14.32 67.78 0.97 -2.65 16 2 C -0.18 -4.61 9.80 25.65 0.25 -4.36 16 3 C 0.13 3.86 5.61 85.63 0.48 4.34 16 4 N -0.58 -22.60 2.45 -834.51 -2.05 -24.65 16 5 C 0.26 13.15 5.18 85.63 0.44 13.60 16 6 C -0.55 -29.89 9.39 25.60 0.24 -29.65 16 7 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16 8 C 0.02 0.88 5.46 84.66 0.46 1.34 16 9 N -0.92 -53.39 13.29 21.45 0.28 -53.10 16 10 Si 0.96 43.78 29.54 68.60 2.03 45.81 16 11 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 12 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 13 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 14 C 0.56 20.61 6.43 86.63 0.56 21.17 16 15 O -0.57 -25.37 15.35 -4.09 -0.06 -25.43 16 16 C -0.22 -5.90 4.99 -19.98 -0.10 -6.00 16 17 C 0.05 1.42 7.09 22.51 0.16 1.58 16 18 C -0.16 -4.16 6.85 36.39 0.25 -3.91 16 19 N 0.05 1.46 4.45 -46.41 -0.21 1.25 16 20 O -0.20 -6.79 18.42 18.89 0.35 -6.45 16 21 O -0.17 -5.49 17.40 18.89 0.33 -5.16 16 22 C 0.23 4.71 7.25 22.44 0.16 4.87 16 23 F -0.10 -2.14 15.45 44.97 0.69 -1.45 16 24 C -0.21 -2.96 9.85 22.41 0.22 -2.74 16 25 C 0.34 6.46 6.75 38.70 0.26 6.72 16 26 N -0.81 -11.82 8.95 -50.98 -0.46 -12.27 16 27 H 0.10 2.23 7.84 -2.91 -0.02 2.20 16 28 H 0.12 2.07 8.06 -2.91 -0.02 2.04 16 29 H 0.11 2.54 8.06 -2.91 -0.02 2.52 16 30 H 0.08 2.74 7.68 -2.39 -0.02 2.72 16 31 H 0.09 2.44 4.49 -2.39 -0.01 2.43 16 32 H 0.03 1.33 8.07 -2.39 -0.02 1.31 16 33 H 0.01 0.67 7.35 -2.39 -0.02 0.65 16 34 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 35 H 0.16 4.59 6.86 -2.91 -0.02 4.57 16 36 H 0.21 1.02 8.06 -2.91 -0.02 1.00 16 37 H 0.43 2.44 8.84 -92.72 -0.82 1.62 16 38 H 0.41 8.42 6.82 -92.71 -0.63 7.78 16 Total: -1.00 -71.06 343.84 4.97 -66.09 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -0.30 Total: 11.04 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: 4.36 Total: 4.31 kcal Atomic # 7 Polarization: -86.34 SS G_CDS: -2.43 Total: -88.77 kcal Atomic # 8 Polarization: -37.65 SS G_CDS: 0.61 Total: -37.04 kcal Atomic # 9 Polarization: -2.14 SS G_CDS: 0.69 Total: -1.45 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -71.06 4.97 -66.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816803277.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.046 kcal (2) G-P(sol) polarization free energy of solvation -71.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds