Wall clock time and date at job start Tue Mar 31 2020 14:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50700 * 120.00207 * 2 1 4 4 H 1.09000 * 110.67558 * 357.03735 * 3 2 1 5 5 O 1.44378 * 110.61667 * 234.06741 * 3 2 1 6 6 C 1.43747 * 106.97125 * 201.43875 * 5 3 2 7 7 C 1.54100 * 107.29659 * 26.51789 * 6 5 3 8 8 C 1.54813 * 104.18532 * 357.96589 * 7 6 5 9 9 H 1.09002 * 110.90394 * 97.32129 * 8 7 6 10 10 N 1.46898 * 110.90878 * 220.88666 * 8 7 6 11 11 C 1.46904 * 110.99885 * 270.67337 * 10 8 7 12 12 C 1.50702 * 109.46825 * 180.02562 * 11 10 8 13 13 C 1.38114 * 120.02778 * 259.72223 * 12 11 10 14 14 C 1.38384 * 120.05860 * 179.79345 * 13 12 11 15 15 Cl 1.73600 * 119.94961 * 180.25429 * 14 13 12 16 16 C 1.38436 * 120.10842 * 0.46349 * 14 13 12 17 17 C 1.38068 * 120.05683 * 359.78891 * 16 14 13 18 18 C 1.38848 * 120.03102 * 80.00172 * 12 11 10 19 19 O 1.35769 * 120.05680 * 359.95479 * 18 12 11 20 20 C 1.34818 * 117.00428 * 174.42262 * 19 18 12 21 21 H 1.08007 * 120.00208 * 5.06365 * 20 19 18 22 22 C 1.38644 * 120.00525 * 185.06055 * 20 19 18 23 23 N 1.31564 * 119.99418 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00614 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.46764 * 60.00283 * 24 22 20 26 26 H 1.48500 * 109.47220 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.47027 * 300.00573 * 24 22 20 28 28 H 1.08009 * 120.00501 * 179.97438 * 1 2 3 29 29 H 1.08005 * 119.99996 * 0.02562 * 1 2 3 30 30 H 1.08004 * 119.99486 * 179.97438 * 2 1 3 31 31 H 1.09000 * 109.87856 * 267.09135 * 6 5 3 32 32 H 1.08997 * 109.87664 * 145.94256 * 6 5 3 33 33 H 1.08996 * 110.48749 * 239.29528 * 7 6 5 34 34 H 1.08992 * 110.60150 * 116.69810 * 7 6 5 35 35 H 1.00904 * 110.99952 * 146.72138 * 10 8 7 36 36 H 1.08994 * 109.47112 * 299.99599 * 11 10 8 37 37 H 1.09001 * 109.46876 * 60.00208 * 11 10 8 38 38 H 1.08009 * 119.97219 * 0.02562 * 13 12 11 39 39 H 1.08001 * 119.96962 * 179.77023 * 16 14 13 40 40 H 1.08001 * 120.02505 * 179.97438 * 17 16 14 41 41 H 0.97006 * 120.00085 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3740 2.1476 -0.0527 5 8 3.0044 1.3488 -1.0942 6 6 4.0002 2.3276 -0.7524 7 6 4.0582 2.4044 0.7856 8 6 2.9645 1.4150 1.2564 9 1 3.3982 0.4477 1.5099 10 7 2.2146 1.9647 2.3937 11 6 2.8484 1.6000 3.6678 12 6 2.0526 2.1798 4.8087 13 6 2.4760 3.3396 5.4276 14 6 1.7434 3.8749 6.4725 15 17 2.2746 5.3364 7.2441 16 6 0.5899 3.2443 6.9065 17 6 0.1652 2.0818 6.2945 18 6 0.8962 1.5452 5.2424 19 8 0.4805 0.4024 4.6388 20 6 -0.5826 -0.2247 5.1814 21 1 -1.1131 0.2275 6.0064 22 6 -0.9949 -1.4499 4.6803 23 7 -0.3484 -2.0009 3.6757 24 14 -2.4674 -2.3190 5.4325 25 1 -3.6695 -1.4565 5.3050 26 1 -2.7007 -3.6022 4.7224 27 1 -2.2022 -2.5895 6.8684 28 1 -0.5401 -0.9353 -0.0004 29 1 -0.5400 0.9354 -0.0004 30 1 1.8499 -0.9354 0.0004 31 1 3.7214 3.2985 -1.1618 32 1 4.9701 2.0222 -1.1450 33 1 3.8307 3.4146 1.1259 34 1 5.0372 2.0919 1.1486 35 1 1.2513 1.6654 2.3703 36 1 2.8785 0.5145 3.7610 37 1 3.8638 1.9954 3.6948 38 1 3.3776 3.8314 5.0933 39 1 0.0218 3.6620 7.7246 40 1 -0.7346 1.5901 6.6338 41 1 -0.6370 -2.8580 3.3248 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000831678620.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:18 Heat of formation + Delta-G solvation = -48.928900 kcal Electronic energy + Delta-G solvation = -25155.261382 eV Core-core repulsion = 21447.495391 eV Total energy + Delta-G solvation = -3707.765991 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.09409 -40.57457 -38.45458 -37.18905 -36.43547 -34.78859 -34.24158 -32.95257 -31.11363 -30.31146 -28.67819 -27.34670 -25.75848 -23.82357 -23.38373 -22.26201 -21.62796 -21.02488 -19.87933 -18.72732 -17.73492 -17.14601 -17.08679 -16.69528 -16.47575 -16.15962 -15.93781 -15.44874 -15.29345 -15.10367 -14.61659 -14.52556 -14.45965 -14.15913 -13.83230 -13.59645 -13.37027 -13.16697 -13.02537 -12.77322 -12.58859 -12.39876 -12.22546 -12.16985 -11.96527 -11.84703 -11.79518 -11.71348 -11.15256 -10.73265 -10.71884 -10.36894 -9.85947 -9.45726 -8.89490 -8.43611 -6.09419 0.41635 0.51476 1.21978 1.37096 1.38892 1.45163 1.50436 2.17179 2.65009 2.90722 3.12154 3.42190 3.45857 3.65885 3.69603 3.92864 3.97011 4.00840 4.14371 4.26185 4.29248 4.36242 4.39021 4.50432 4.61215 4.64137 4.75059 4.85168 4.90774 4.96887 5.06231 5.09595 5.14543 5.16416 5.42877 5.45286 5.59422 5.61152 5.67763 5.84195 5.95670 5.99902 6.08731 6.26489 7.00878 7.74346 8.75307 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.007030 B = 0.006029 C = 0.003375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3981.817326 B = 4643.008301 C = 8293.230892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.169 4.169 3 C 0.115 3.885 4 H 0.080 0.920 5 O -0.390 6.390 6 C 0.044 3.956 7 C -0.138 4.138 8 C 0.060 3.940 9 H 0.044 0.956 10 N -0.661 5.661 11 C 0.128 3.872 12 C -0.150 4.150 13 C -0.042 4.042 14 C -0.114 4.114 15 Cl -0.077 7.077 16 C -0.058 4.058 17 C -0.233 4.233 18 C 0.131 3.869 19 O -0.203 6.203 20 C -0.414 4.414 21 H 0.099 0.901 22 C -0.006 4.006 23 N -0.898 5.898 24 Si 1.004 2.996 25 H -0.260 1.260 26 H -0.276 1.276 27 H -0.263 1.263 28 H 0.100 0.900 29 H 0.105 0.895 30 H 0.102 0.898 31 H 0.072 0.928 32 H 0.101 0.899 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.338 0.662 36 H 0.012 0.988 37 H 0.096 0.904 38 H 0.150 0.850 39 H 0.144 0.856 40 H 0.130 0.870 41 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.570 9.057 -1.946 10.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.188 4.188 3 C 0.057 3.943 4 H 0.098 0.902 5 O -0.309 6.309 6 C -0.032 4.032 7 C -0.176 4.176 8 C -0.050 4.050 9 H 0.062 0.938 10 N -0.292 5.292 11 C -0.001 4.001 12 C -0.152 4.152 13 C -0.061 4.061 14 C -0.141 4.141 15 Cl -0.049 7.049 16 C -0.077 4.077 17 C -0.252 4.252 18 C 0.079 3.921 19 O -0.108 6.108 20 C -0.490 4.490 21 H 0.116 0.884 22 C -0.206 4.206 23 N -0.534 5.534 24 Si 0.825 3.175 25 H -0.185 1.185 26 H -0.201 1.201 27 H -0.188 1.188 28 H 0.118 0.882 29 H 0.124 0.876 30 H 0.120 0.880 31 H 0.091 0.909 32 H 0.119 0.881 33 H 0.111 0.889 34 H 0.106 0.894 35 H 0.155 0.845 36 H 0.031 0.969 37 H 0.114 0.886 38 H 0.168 0.832 39 H 0.162 0.838 40 H 0.148 0.852 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.010 9.350 -2.459 11.384 hybrid contribution -1.082 -1.572 0.777 2.061 sum 4.928 7.778 -1.682 9.360 Atomic orbital electron populations 1.23898 0.95645 1.02507 0.96967 1.22639 0.95987 0.97368 1.02757 1.22140 0.91106 0.95492 0.85569 0.90217 1.88877 1.39182 1.61574 1.41278 1.23344 0.92651 0.92632 0.94578 1.22946 0.98631 1.00823 0.95212 1.23043 0.94801 0.96506 0.90694 0.93826 1.60801 1.06056 1.61527 1.00844 1.20471 0.97132 0.96136 0.86329 1.18959 0.96147 0.98313 1.01782 1.20667 0.99300 0.93001 0.93170 1.20508 0.99524 0.92913 1.01157 1.98299 1.90240 1.35526 1.80830 1.20890 0.94544 0.93509 0.98781 1.21184 1.03548 0.99606 1.00893 1.19733 0.93037 0.87576 0.91777 1.83938 1.45357 1.31988 1.49509 1.21652 1.06126 1.03092 1.18094 0.88409 1.26251 1.01649 0.96109 0.96622 1.70147 1.40826 1.17824 1.24625 0.84840 0.76855 0.77492 0.78337 1.18460 1.20062 1.18753 0.88155 0.87628 0.87976 0.90929 0.88106 0.88891 0.89391 0.84459 0.96946 0.88582 0.83210 0.83827 0.85189 0.92092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.17 14.33 67.79 0.97 -4.20 16 2 C -0.17 -5.83 9.24 25.65 0.24 -5.59 16 3 C 0.11 3.58 3.11 30.53 0.10 3.67 16 4 H 0.08 2.46 7.86 -2.39 -0.02 2.44 16 5 O -0.39 -11.67 11.21 -148.98 -1.67 -13.34 16 6 C 0.04 0.97 7.70 72.35 0.56 1.53 16 7 C -0.14 -3.18 6.75 31.59 0.21 -2.96 16 8 C 0.06 1.85 2.85 46.22 0.13 1.98 16 9 H 0.04 1.50 7.78 -2.39 -0.02 1.49 16 10 N -0.66 -22.63 6.32 -488.86 -3.09 -25.72 16 11 C 0.13 4.54 5.36 85.56 0.46 5.00 16 12 C -0.15 -5.68 5.41 -19.75 -0.11 -5.79 16 13 C -0.04 -1.35 9.45 22.28 0.21 -1.14 16 14 C -0.11 -3.59 6.32 22.35 0.14 -3.45 16 15 Cl -0.08 -2.04 28.95 -2.72 -0.08 -2.12 16 16 C -0.06 -1.94 9.82 22.28 0.22 -1.72 16 17 C -0.23 -9.30 9.17 22.39 0.21 -9.09 16 18 C 0.13 5.82 6.62 22.57 0.15 5.97 16 19 O -0.20 -10.67 8.95 -22.83 -0.20 -10.87 16 20 C -0.41 -21.77 9.49 67.92 0.64 -21.13 16 21 H 0.10 4.78 5.20 -2.91 -0.02 4.76 16 22 C -0.01 -0.32 5.49 84.83 0.47 0.15 16 23 N -0.90 -49.87 13.67 21.61 0.30 -49.57 16 24 Si 1.00 40.20 29.55 68.60 2.03 42.23 16 25 H -0.26 -9.89 7.11 99.48 0.71 -9.19 16 26 H -0.28 -10.80 7.11 99.48 0.71 -10.10 16 27 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 28 H 0.10 3.39 8.06 -2.91 -0.02 3.37 16 29 H 0.11 3.26 7.87 -2.91 -0.02 3.24 16 30 H 0.10 3.65 8.06 -2.91 -0.02 3.62 16 31 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.09 2.07 8.06 -2.39 -0.02 2.05 16 34 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.34 13.60 8.42 -89.69 -0.76 12.85 16 36 H 0.01 0.52 7.80 -2.39 -0.02 0.51 16 37 H 0.10 2.82 8.00 -2.39 -0.02 2.80 16 38 H 0.15 3.97 8.04 -2.91 -0.02 3.95 16 39 H 0.14 3.98 8.06 -2.91 -0.02 3.95 16 40 H 0.13 5.24 5.64 -2.91 -0.02 5.22 16 41 H 0.27 14.06 8.31 -92.70 -0.77 13.29 16 Total: -1.00 -58.60 362.64 2.17 -56.43 By element: Atomic # 1 Polarization: 39.44 SS G_CDS: 0.29 Total: 39.74 kcal Atomic # 6 Polarization: -41.37 SS G_CDS: 4.59 Total: -36.77 kcal Atomic # 7 Polarization: -72.50 SS G_CDS: -2.80 Total: -75.29 kcal Atomic # 8 Polarization: -22.33 SS G_CDS: -1.87 Total: -24.21 kcal Atomic # 14 Polarization: 40.20 SS G_CDS: 2.03 Total: 42.23 kcal Atomic # 17 Polarization: -2.04 SS G_CDS: -0.08 Total: -2.12 kcal Total: -58.60 2.17 -56.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831678620.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.503 kcal (2) G-P(sol) polarization free energy of solvation -58.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds