Wall clock time and date at job start Tue Mar 31 2020 13:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42907 * 113.99784 * 2 1 4 4 C 1.52997 * 109.46864 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47594 * 65.00108 * 4 3 2 6 6 C 1.36709 * 120.00150 * 276.17294 * 5 4 3 7 7 H 1.08011 * 119.99906 * 342.10057 * 6 5 4 8 8 C 1.39121 * 120.00491 * 162.09874 * 6 5 4 9 9 N 1.31317 * 120.00013 * 356.18043 * 8 6 5 10 10 Si 1.86804 * 120.00215 * 176.18049 * 8 6 5 11 11 H 1.48506 * 109.46974 * 60.00396 * 10 8 6 12 12 H 1.48505 * 109.46887 * 179.97438 * 10 8 6 13 13 H 1.48492 * 109.47161 * 300.00206 * 10 8 6 14 14 C 1.34775 * 119.99980 * 96.16212 * 5 4 3 15 15 O 1.21761 * 119.99482 * 126.60520 * 14 5 4 16 16 C 1.46226 * 120.00403 * 306.60504 * 14 5 4 17 17 C 1.50693 * 119.99902 * 312.39232 * 16 14 5 18 18 C 1.34982 * 120.00055 * 132.39217 * 16 14 5 19 19 C 1.47144 * 119.99860 * 358.00018 * 18 16 14 20 20 C 1.39899 * 120.16663 * 317.17682 * 19 18 16 21 21 C 1.37861 * 119.85120 * 180.02562 * 20 19 18 22 22 C 1.38415 * 120.18629 * 359.97438 * 21 20 19 23 23 C 1.38503 * 120.34150 * 0.04177 * 22 21 20 24 24 Cl 1.73598 * 119.92874 * 180.02562 * 23 22 21 25 25 C 1.38020 * 120.14678 * 359.95332 * 23 22 21 26 26 H 1.09004 * 109.47110 * 60.00279 * 1 2 3 27 27 H 1.09006 * 109.47125 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47338 * 299.99855 * 1 2 3 29 29 H 1.08995 * 109.46803 * 59.99880 * 3 2 1 30 30 H 1.08996 * 109.47223 * 299.99814 * 3 2 1 31 31 H 1.09000 * 109.47436 * 305.00120 * 4 3 2 32 32 H 1.09003 * 109.47318 * 184.99998 * 4 3 2 33 33 H 0.96998 * 120.00794 * 185.00768 * 9 8 6 34 34 H 1.09003 * 109.47548 * 263.98264 * 17 16 14 35 35 H 1.09000 * 109.47371 * 23.98363 * 17 16 14 36 36 H 1.09004 * 109.47235 * 143.98162 * 17 16 14 37 37 H 1.07996 * 120.00033 * 178.00039 * 18 16 14 38 38 H 1.08008 * 120.07539 * 0.02562 * 20 19 18 39 39 H 1.08004 * 119.90830 * 179.97438 * 21 20 19 40 40 H 1.08004 * 119.82814 * 180.02562 * 22 21 20 41 41 H 1.07996 * 120.09956 * 180.29526 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5353 1.1847 0.0006 5 7 3.9767 0.5641 -1.2508 6 6 3.9771 -0.7973 -1.3757 7 1 3.9374 -1.4205 -0.4944 8 6 4.0287 -1.3801 -2.6379 9 7 4.0013 -0.6246 -3.7116 10 14 4.1371 -3.2375 -2.8054 11 1 2.9487 -3.8619 -2.1703 12 1 4.1782 -3.6032 -4.2441 13 1 5.3695 -3.7239 -2.1350 14 6 4.3821 1.3352 -2.2791 15 8 5.4685 1.1417 -2.7938 16 6 3.5173 2.4042 -2.7768 17 6 2.0616 2.1290 -3.0522 18 6 4.0230 3.6375 -2.9894 19 6 5.4338 3.9178 -2.6789 20 6 6.0035 3.4317 -1.4972 21 6 7.3257 3.6986 -1.2125 22 6 8.0901 4.4452 -2.0924 23 6 7.5340 4.9305 -3.2643 24 17 8.5028 5.8650 -4.3606 25 6 6.2117 4.6715 -3.5633 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.6885 1.8464 0.8899 30 1 1.6886 1.8464 -0.8900 31 1 3.8507 0.5686 0.8427 32 1 3.9784 2.1766 0.0902 33 1 3.9639 -1.0324 -4.5909 34 1 1.9280 1.9045 -4.1105 35 1 1.7336 1.2775 -2.4560 36 1 1.4699 3.0060 -2.7893 37 1 3.3923 4.4186 -3.3874 38 1 5.4088 2.8487 -0.8095 39 1 7.7664 3.3242 -0.3003 40 1 9.1255 4.6505 -1.8638 41 1 5.7802 5.0463 -4.4796 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837233208.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:38 Heat of formation + Delta-G solvation = -12.434441 kcal Electronic energy + Delta-G solvation = -26046.613199 eV Core-core repulsion = 22340.429726 eV Total energy + Delta-G solvation = -3706.183472 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.40517 -38.26818 -37.05088 -36.21039 -34.38656 -33.72243 -31.82330 -30.72676 -30.28366 -28.75253 -26.21694 -25.87556 -24.93477 -22.74303 -22.30020 -21.91118 -20.46416 -18.46304 -16.94491 -16.40105 -15.87108 -15.64081 -15.19001 -15.10566 -14.90108 -14.39263 -14.09069 -13.94982 -13.66829 -13.44096 -13.23158 -12.86844 -12.68400 -12.30500 -12.06511 -11.76337 -11.72059 -11.32953 -11.22561 -11.19419 -11.06388 -10.99602 -10.89371 -10.75675 -10.54747 -10.48606 -10.31658 -9.99811 -9.19839 -9.07710 -8.98829 -8.43587 -8.08010 -7.64626 -7.21922 -6.02752 -3.49853 1.33961 1.62199 2.33767 2.56389 3.35468 3.39860 3.40679 4.04497 4.28004 4.31373 4.46516 4.99492 5.11189 5.15656 5.37079 5.39422 5.53079 5.57142 5.60764 5.68945 5.73844 5.80233 5.85453 5.88767 5.97814 6.01764 6.08660 6.12070 6.15513 6.30226 6.38981 6.50726 6.53680 6.60465 6.72440 6.84392 7.07762 7.18477 7.30688 7.65400 7.76335 8.19855 9.11792 9.42022 9.69823 10.20031 11.07715 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.014846 B = 0.004354 C = 0.003848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.623823 B = 6429.489945 C = 7274.014637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.359 6.359 3 C 0.031 3.969 4 C 0.126 3.874 5 N -0.518 5.518 6 C -0.260 4.260 7 H 0.084 0.916 8 C 0.013 3.987 9 N -0.864 5.864 10 Si 0.924 3.076 11 H -0.280 1.280 12 H -0.289 1.289 13 H -0.280 1.280 14 C 0.569 3.431 15 O -0.501 6.501 16 C -0.077 4.077 17 C -0.109 4.109 18 C -0.153 4.153 19 C -0.006 4.006 20 C -0.087 4.087 21 C -0.104 4.104 22 C -0.123 4.123 23 C -0.033 4.033 24 Cl -0.088 7.088 25 C -0.107 4.107 26 H 0.033 0.967 27 H 0.078 0.922 28 H 0.028 0.972 29 H 0.033 0.967 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.264 0.736 34 H 0.070 0.930 35 H 0.085 0.915 36 H 0.051 0.949 37 H 0.120 0.880 38 H 0.124 0.876 39 H 0.127 0.873 40 H 0.125 0.875 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.609 10.466 5.100 11.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.276 6.276 3 C -0.047 4.047 4 C 0.000 4.000 5 N -0.244 5.244 6 C -0.388 4.388 7 H 0.102 0.898 8 C -0.189 4.189 9 N -0.507 5.507 10 Si 0.753 3.247 11 H -0.206 1.206 12 H -0.215 1.215 13 H -0.206 1.206 14 C 0.359 3.641 15 O -0.375 6.375 16 C -0.082 4.082 17 C -0.166 4.166 18 C -0.172 4.172 19 C -0.006 4.006 20 C -0.105 4.105 21 C -0.122 4.122 22 C -0.142 4.142 23 C -0.060 4.060 24 Cl -0.060 7.060 25 C -0.126 4.126 26 H 0.052 0.948 27 H 0.096 0.904 28 H 0.047 0.953 29 H 0.051 0.949 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.088 0.912 35 H 0.103 0.897 36 H 0.070 0.930 37 H 0.138 0.862 38 H 0.142 0.858 39 H 0.144 0.856 40 H 0.143 0.857 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.714 10.223 4.514 11.306 hybrid contribution -0.413 -0.765 -0.498 1.002 sum -2.127 9.458 4.016 10.493 Atomic orbital electron populations 1.22646 0.83213 1.01934 0.98744 1.88137 1.17519 1.26997 1.94991 1.23465 0.96559 0.85356 0.99321 1.21382 0.90972 0.97293 0.90350 1.42750 1.64766 1.05292 1.11619 1.19225 1.46576 0.80026 0.92955 0.89823 1.25017 0.99498 0.99117 0.95303 1.69492 1.48873 1.34488 0.97800 0.86027 0.78248 0.83631 0.76797 1.20598 1.21489 1.20585 1.16859 0.85270 0.80324 0.81658 1.90610 1.21008 1.67406 1.58471 1.22692 0.96550 0.93713 0.95198 1.20860 0.91388 1.01502 1.02815 1.21708 0.92881 0.96820 1.05821 1.18818 0.93701 0.94841 0.93256 1.21485 0.95394 0.96949 0.96666 1.20900 0.93927 0.97940 0.99424 1.20928 1.00047 0.99760 0.93458 1.20665 0.92269 1.00024 0.92999 1.98330 1.71582 1.72233 1.63836 1.21015 0.91923 1.00015 0.99660 0.94793 0.90359 0.95314 0.94878 0.92311 0.91199 0.91694 0.92436 0.91157 0.89650 0.93029 0.86178 0.85843 0.85555 0.85709 0.85420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.01 101.05 1.11 1.56 16 2 O -0.36 -6.64 9.88 -35.23 -0.35 -6.98 16 3 C 0.03 0.52 5.74 37.16 0.21 0.73 16 4 C 0.13 2.33 5.67 -4.04 -0.02 2.30 16 5 N -0.52 -12.21 2.27 -116.47 -0.26 -12.47 16 6 C -0.26 -6.84 8.84 -15.05 -0.13 -6.98 16 7 H 0.08 2.16 7.84 -52.48 -0.41 1.75 16 8 C 0.01 0.36 5.22 -17.44 -0.09 0.27 16 9 N -0.86 -24.67 10.17 55.50 0.56 -24.11 16 10 Si 0.92 21.89 29.56 -169.99 -5.02 16.87 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 13 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 14 C 0.57 13.82 1.69 -13.05 -0.02 13.80 16 15 O -0.50 -14.30 13.97 5.13 0.07 -14.23 16 16 C -0.08 -1.58 5.18 -102.58 -0.53 -2.12 16 17 C -0.11 -1.99 8.43 36.00 0.30 -1.69 16 18 C -0.15 -2.76 9.47 -37.13 -0.35 -3.11 16 19 C -0.01 -0.11 4.82 -105.06 -0.51 -0.61 16 20 C -0.09 -1.59 7.47 -39.10 -0.29 -1.88 16 21 C -0.10 -1.68 10.03 -39.65 -0.40 -2.08 16 22 C -0.12 -1.90 9.82 -39.42 -0.39 -2.29 16 23 C -0.03 -0.53 6.31 -39.56 -0.25 -0.78 16 24 Cl -0.09 -1.25 28.95 -51.86 -1.50 -2.75 16 25 C -0.11 -1.83 9.58 -39.06 -0.37 -2.20 16 26 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 28 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.97 4.32 -51.93 -0.22 0.75 16 31 H 0.07 1.26 8.09 -51.93 -0.42 0.84 16 32 H 0.06 1.06 6.03 -51.93 -0.31 0.74 16 33 H 0.26 7.44 8.31 -40.82 -0.34 7.11 16 34 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.08 1.72 5.79 -51.93 -0.30 1.42 16 36 H 0.05 0.74 8.12 -51.93 -0.42 0.32 16 37 H 0.12 1.78 8.06 -52.49 -0.42 1.36 16 38 H 0.12 2.29 4.53 -52.48 -0.24 2.06 16 39 H 0.13 1.73 8.06 -52.48 -0.42 1.31 16 40 H 0.12 1.61 8.06 -52.48 -0.42 1.19 16 41 H 0.13 1.96 8.06 -52.49 -0.42 1.54 16 LS Contribution 351.37 15.07 5.30 5.30 Total: -1.00 -32.19 351.37 -8.21 -40.40 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -5.27 Total: 3.05 kcal Atomic # 6 Polarization: -3.34 SS G_CDS: -1.73 Total: -5.07 kcal Atomic # 7 Polarization: -36.88 SS G_CDS: 0.30 Total: -36.58 kcal Atomic # 8 Polarization: -20.94 SS G_CDS: -0.28 Total: -21.21 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Atomic # 17 Polarization: -1.25 SS G_CDS: -1.50 Total: -2.75 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.19 -8.21 -40.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837233208.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.966 kcal (2) G-P(sol) polarization free energy of solvation -32.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds