Wall clock time and date at job start Tue Mar 31 2020 13:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42907 * 113.99784 * 2 1 4 4 C 1.52997 * 109.46864 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47594 * 65.00108 * 4 3 2 6 6 C 1.36709 * 120.00150 * 276.17294 * 5 4 3 7 7 H 1.08011 * 119.99906 * 342.10057 * 6 5 4 8 8 C 1.39121 * 120.00491 * 162.09874 * 6 5 4 9 9 N 1.31317 * 120.00013 * 356.18043 * 8 6 5 10 10 Si 1.86804 * 120.00215 * 176.18049 * 8 6 5 11 11 H 1.48506 * 109.46974 * 60.00396 * 10 8 6 12 12 H 1.48505 * 109.46887 * 179.97438 * 10 8 6 13 13 H 1.48492 * 109.47161 * 300.00206 * 10 8 6 14 14 C 1.34775 * 119.99980 * 96.16212 * 5 4 3 15 15 O 1.21761 * 119.99482 * 126.60520 * 14 5 4 16 16 C 1.46226 * 120.00403 * 306.60504 * 14 5 4 17 17 C 1.50693 * 119.99902 * 312.39232 * 16 14 5 18 18 C 1.34982 * 120.00055 * 132.39217 * 16 14 5 19 19 C 1.47144 * 119.99860 * 358.00018 * 18 16 14 20 20 C 1.39899 * 120.16663 * 317.17682 * 19 18 16 21 21 C 1.37861 * 119.85120 * 180.02562 * 20 19 18 22 22 C 1.38415 * 120.18629 * 359.97438 * 21 20 19 23 23 C 1.38503 * 120.34150 * 0.04177 * 22 21 20 24 24 Cl 1.73598 * 119.92874 * 180.02562 * 23 22 21 25 25 C 1.38020 * 120.14678 * 359.95332 * 23 22 21 26 26 H 1.09004 * 109.47110 * 60.00279 * 1 2 3 27 27 H 1.09006 * 109.47125 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47338 * 299.99855 * 1 2 3 29 29 H 1.08995 * 109.46803 * 59.99880 * 3 2 1 30 30 H 1.08996 * 109.47223 * 299.99814 * 3 2 1 31 31 H 1.09000 * 109.47436 * 305.00120 * 4 3 2 32 32 H 1.09003 * 109.47318 * 184.99998 * 4 3 2 33 33 H 0.96998 * 120.00794 * 185.00768 * 9 8 6 34 34 H 1.09003 * 109.47548 * 263.98264 * 17 16 14 35 35 H 1.09000 * 109.47371 * 23.98363 * 17 16 14 36 36 H 1.09004 * 109.47235 * 143.98162 * 17 16 14 37 37 H 1.07996 * 120.00033 * 178.00039 * 18 16 14 38 38 H 1.08008 * 120.07539 * 0.02562 * 20 19 18 39 39 H 1.08004 * 119.90830 * 179.97438 * 21 20 19 40 40 H 1.08004 * 119.82814 * 180.02562 * 22 21 20 41 41 H 1.07996 * 120.09956 * 180.29526 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5353 1.1847 0.0006 5 7 3.9767 0.5641 -1.2508 6 6 3.9771 -0.7973 -1.3757 7 1 3.9374 -1.4205 -0.4944 8 6 4.0287 -1.3801 -2.6379 9 7 4.0013 -0.6246 -3.7116 10 14 4.1371 -3.2375 -2.8054 11 1 2.9487 -3.8619 -2.1703 12 1 4.1782 -3.6032 -4.2441 13 1 5.3695 -3.7239 -2.1350 14 6 4.3821 1.3352 -2.2791 15 8 5.4685 1.1417 -2.7938 16 6 3.5173 2.4042 -2.7768 17 6 2.0616 2.1290 -3.0522 18 6 4.0230 3.6375 -2.9894 19 6 5.4338 3.9178 -2.6789 20 6 6.0035 3.4317 -1.4972 21 6 7.3257 3.6986 -1.2125 22 6 8.0901 4.4452 -2.0924 23 6 7.5340 4.9305 -3.2643 24 17 8.5028 5.8650 -4.3606 25 6 6.2117 4.6715 -3.5633 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.6885 1.8464 0.8899 30 1 1.6886 1.8464 -0.8900 31 1 3.8507 0.5686 0.8427 32 1 3.9784 2.1766 0.0902 33 1 3.9639 -1.0324 -4.5909 34 1 1.9280 1.9045 -4.1105 35 1 1.7336 1.2775 -2.4560 36 1 1.4699 3.0060 -2.7893 37 1 3.3923 4.4186 -3.3874 38 1 5.4088 2.8487 -0.8095 39 1 7.7664 3.3242 -0.3003 40 1 9.1255 4.6505 -1.8638 41 1 5.7802 5.0463 -4.4796 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837233208.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:37 Heat of formation + Delta-G solvation = -30.711480 kcal Electronic energy + Delta-G solvation = -26047.405751 eV Core-core repulsion = 22340.429726 eV Total energy + Delta-G solvation = -3706.976024 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.94358 -39.70662 -38.42465 -37.42936 -36.05650 -35.35672 -33.69440 -32.06733 -31.58455 -30.27762 -27.58291 -27.27157 -26.63514 -24.30082 -23.66609 -23.24793 -21.99408 -20.15497 -18.45104 -17.99060 -17.19499 -16.97291 -16.89447 -16.42618 -16.35360 -15.97729 -15.68660 -15.48095 -15.12354 -14.88206 -14.57188 -14.20295 -14.07172 -13.72251 -13.45990 -13.25890 -13.10278 -12.97150 -12.89652 -12.68003 -12.51328 -12.47013 -12.36413 -12.29075 -12.09344 -12.05019 -11.73969 -11.66275 -10.97213 -10.59196 -10.27102 -9.93418 -9.70959 -9.16173 -8.98773 -8.05457 -5.52277 -0.01856 0.32453 1.04324 1.19287 1.43669 1.47642 1.52479 2.37338 2.59347 2.81568 3.08959 3.31075 3.47756 3.80156 3.91335 4.09123 4.20920 4.25359 4.37627 4.44154 4.48291 4.54127 4.61877 4.63752 4.69600 4.74250 4.79259 4.84585 4.88248 4.95222 5.02967 5.09853 5.19424 5.25013 5.38841 5.45623 5.56356 5.63234 5.83699 5.91705 6.22239 6.57369 7.13932 7.55428 7.86317 8.34004 9.04149 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.014846 B = 0.004354 C = 0.003848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.623823 B = 6429.489945 C = 7274.014637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.397 6.397 3 C 0.037 3.963 4 C 0.120 3.880 5 N -0.534 5.534 6 C -0.263 4.263 7 H 0.080 0.920 8 C -0.038 4.038 9 N -0.894 5.894 10 Si 0.977 3.023 11 H -0.268 1.268 12 H -0.295 1.295 13 H -0.283 1.283 14 C 0.581 3.419 15 O -0.557 6.557 16 C -0.115 4.115 17 C -0.096 4.096 18 C -0.120 4.120 19 C -0.035 4.035 20 C -0.104 4.104 21 C -0.111 4.111 22 C -0.119 4.119 23 C -0.042 4.042 24 Cl -0.070 7.070 25 C -0.113 4.113 26 H 0.037 0.963 27 H 0.081 0.919 28 H 0.055 0.945 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.084 0.916 33 H 0.254 0.746 34 H 0.056 0.944 35 H 0.062 0.938 36 H 0.093 0.907 37 H 0.158 0.842 38 H 0.113 0.887 39 H 0.148 0.852 40 H 0.152 0.848 41 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.048 12.246 5.864 13.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.316 6.316 3 C -0.041 4.041 4 C -0.004 4.004 5 N -0.260 5.260 6 C -0.391 4.391 7 H 0.098 0.902 8 C -0.237 4.237 9 N -0.538 5.538 10 Si 0.805 3.195 11 H -0.193 1.193 12 H -0.222 1.222 13 H -0.209 1.209 14 C 0.374 3.626 15 O -0.435 6.435 16 C -0.119 4.119 17 C -0.152 4.152 18 C -0.139 4.139 19 C -0.035 4.035 20 C -0.122 4.122 21 C -0.129 4.129 22 C -0.138 4.138 23 C -0.068 4.068 24 Cl -0.041 7.041 25 C -0.132 4.132 26 H 0.055 0.945 27 H 0.100 0.900 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.102 0.898 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.112 0.888 37 H 0.175 0.825 38 H 0.131 0.869 39 H 0.165 0.835 40 H 0.169 0.831 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -2.190 12.017 5.321 13.324 hybrid contribution -0.156 -1.165 -0.643 1.340 sum -2.346 10.852 4.678 12.048 Atomic orbital electron populations 1.22802 0.81113 1.02744 1.00171 1.88068 1.19962 1.28224 1.95319 1.23361 0.94630 0.85116 1.00999 1.21555 0.93040 0.97848 0.87941 1.42897 1.65377 1.04612 1.13145 1.19374 1.45516 0.81641 0.92585 0.90215 1.25710 1.00161 1.02500 0.95342 1.69630 1.51360 1.35290 0.97518 0.85198 0.78297 0.79894 0.76157 1.19294 1.22157 1.20907 1.17391 0.84558 0.80276 0.80410 1.90562 1.23605 1.69455 1.59845 1.22534 0.97351 0.93672 0.98338 1.20747 0.90552 1.02430 1.01475 1.22129 0.93022 0.96659 1.02131 1.19041 0.94350 0.96102 0.94052 1.21560 0.96385 0.97306 0.96994 1.21205 0.93364 0.97812 1.00493 1.21269 1.01163 0.98552 0.92803 1.20832 0.92358 1.00065 0.93561 1.98335 1.70930 1.71644 1.63199 1.21200 0.92443 0.99638 0.99887 0.94463 0.90013 0.92629 0.91281 0.92243 0.91350 0.89781 0.93609 0.92539 0.91912 0.88822 0.82464 0.86927 0.83470 0.83076 0.84067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 11.01 113.37 1.25 2.00 16 2 O -0.40 -14.34 9.88 -148.98 -1.47 -15.81 16 3 C 0.04 1.16 5.74 71.98 0.41 1.57 16 4 C 0.12 4.40 5.67 86.38 0.49 4.89 16 5 N -0.53 -25.52 2.27 -640.58 -1.46 -26.98 16 6 C -0.26 -14.12 8.84 84.15 0.74 -13.38 16 7 H 0.08 4.22 7.84 -2.90 -0.02 4.20 16 8 C -0.04 -2.15 5.22 84.98 0.44 -1.71 16 9 N -0.89 -52.79 10.17 21.69 0.22 -52.57 16 10 Si 0.98 46.14 29.56 68.60 2.03 48.17 16 11 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 12 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 13 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 14 C 0.58 28.65 1.69 86.32 0.15 28.79 16 15 O -0.56 -32.71 13.97 -4.54 -0.06 -32.77 16 16 C -0.12 -4.65 5.18 -18.54 -0.10 -4.75 16 17 C -0.10 -3.40 8.43 71.23 0.60 -2.80 16 18 C -0.12 -4.14 9.47 23.86 0.23 -3.92 16 19 C -0.04 -1.26 4.82 -20.15 -0.10 -1.35 16 20 C -0.10 -3.76 7.47 22.58 0.17 -3.60 16 21 C -0.11 -3.46 10.03 22.22 0.22 -3.23 16 22 C -0.12 -3.45 9.82 22.38 0.22 -3.23 16 23 C -0.04 -1.26 6.31 22.28 0.14 -1.12 16 24 Cl -0.07 -1.82 28.95 -2.72 -0.08 -1.90 16 25 C -0.11 -3.67 9.58 22.61 0.22 -3.46 16 26 H 0.04 0.94 8.14 -2.38 -0.02 0.92 16 27 H 0.08 2.05 8.14 -2.38 -0.02 2.03 16 28 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.06 1.87 4.32 -2.39 -0.01 1.86 16 31 H 0.07 2.47 8.09 -2.39 -0.02 2.45 16 32 H 0.08 2.68 6.03 -2.39 -0.01 2.67 16 33 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 34 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.06 2.51 5.79 -2.39 -0.01 2.50 16 36 H 0.09 2.43 8.12 -2.38 -0.02 2.41 16 37 H 0.16 4.11 8.06 -2.91 -0.02 4.09 16 38 H 0.11 4.20 4.53 -2.91 -0.01 4.19 16 39 H 0.15 3.82 8.06 -2.91 -0.02 3.80 16 40 H 0.15 3.48 8.06 -2.91 -0.02 3.46 16 41 H 0.14 4.06 8.06 -2.91 -0.02 4.04 16 Total: -1.00 -72.06 351.37 5.31 -66.75 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: 1.05 Total: 20.40 kcal Atomic # 6 Polarization: -10.38 SS G_CDS: 5.09 Total: -5.29 kcal Atomic # 7 Polarization: -78.32 SS G_CDS: -1.24 Total: -79.55 kcal Atomic # 8 Polarization: -47.05 SS G_CDS: -1.54 Total: -48.58 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.17 kcal Atomic # 17 Polarization: -1.82 SS G_CDS: -0.08 Total: -1.90 kcal Total: -72.06 5.31 -66.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837233208.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.040 kcal (2) G-P(sol) polarization free energy of solvation -72.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds