Wall clock time and date at job start Tue Mar 31 2020 13:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42907 * 113.99755 * 2 1 4 4 C 1.52998 * 109.47005 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.47263 * 64.99969 * 4 3 2 6 6 C 1.36710 * 120.00387 * 270.00297 * 5 4 3 7 7 H 1.08001 * 119.99512 * 18.17346 * 6 5 4 8 8 C 1.39123 * 120.00149 * 198.18039 * 6 5 4 9 9 N 1.31314 * 120.00088 * 13.73624 * 8 6 5 10 10 Si 1.86804 * 119.99903 * 193.73912 * 8 6 5 11 11 H 1.48500 * 109.47040 * 89.99729 * 10 8 6 12 12 H 1.48499 * 109.47021 * 209.99674 * 10 8 6 13 13 H 1.48499 * 109.47088 * 329.99822 * 10 8 6 14 14 C 1.34778 * 119.99689 * 89.99664 * 5 4 3 15 15 O 1.21762 * 119.99939 * 242.61494 * 14 5 4 16 16 C 1.46224 * 120.00041 * 62.62169 * 14 5 4 17 17 C 1.50694 * 120.00203 * 5.50062 * 16 14 5 18 18 C 1.34981 * 119.99902 * 185.50011 * 16 14 5 19 19 C 1.47146 * 119.99771 * 173.48952 * 18 16 14 20 20 C 1.39897 * 120.17073 * 322.82936 * 19 18 16 21 21 C 1.37868 * 119.85315 * 179.71868 * 20 19 18 22 22 C 1.38406 * 120.18637 * 0.56125 * 21 20 19 23 23 C 1.38508 * 120.33734 * 359.71263 * 22 21 20 24 24 Cl 1.73606 * 119.92330 * 180.02562 * 23 22 21 25 25 C 1.38011 * 120.14905 * 0.02562 * 23 22 21 26 26 H 1.09005 * 109.47166 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47651 * 299.99744 * 1 2 3 28 28 H 1.08995 * 109.47654 * 60.00273 * 1 2 3 29 29 H 1.08998 * 109.46837 * 60.00018 * 3 2 1 30 30 H 1.08997 * 109.47256 * 299.99981 * 3 2 1 31 31 H 1.08996 * 109.47402 * 305.00368 * 4 3 2 32 32 H 1.09005 * 109.47109 * 184.99861 * 4 3 2 33 33 H 0.96998 * 120.00473 * 184.97892 * 9 8 6 34 34 H 1.09003 * 109.47204 * 267.23473 * 17 16 14 35 35 H 1.08997 * 109.47179 * 27.23478 * 17 16 14 36 36 H 1.08999 * 109.47555 * 147.23467 * 17 16 14 37 37 H 1.07999 * 120.00170 * 353.21208 * 18 16 14 38 38 H 1.08003 * 120.07096 * 0.02562 * 20 19 18 39 39 H 1.08000 * 119.90124 * 180.27696 * 21 20 19 40 40 H 1.07999 * 119.83394 * 179.70038 * 22 21 20 41 41 H 1.08009 * 120.09642 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5353 1.1848 0.0006 5 7 3.9766 0.5641 -1.2509 6 6 4.0976 -0.7951 -1.3344 7 1 3.6042 -1.4266 -0.6103 8 6 4.8562 -1.3648 -2.3520 9 7 5.6681 -0.6168 -3.0630 10 14 4.7198 -3.1937 -2.7068 11 1 3.6516 -3.4245 -3.7122 12 1 6.0142 -3.6931 -3.2362 13 1 4.3850 -3.9173 -1.4540 14 6 4.2632 1.3331 -2.3200 15 8 3.6115 1.2215 -3.3425 16 6 5.3569 2.3013 -2.2521 17 6 6.2421 2.3539 -1.0337 18 6 5.5735 3.1480 -3.2807 19 6 6.5787 4.2153 -3.1559 20 6 6.7491 4.8816 -1.9376 21 6 7.6968 5.8767 -1.8263 22 6 8.4712 6.2255 -2.9191 23 6 8.3051 5.5749 -4.1306 24 17 9.2828 6.0207 -5.4942 25 6 7.3642 4.5731 -4.2561 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8899 29 1 1.6884 1.8464 0.8900 30 1 1.6885 1.8465 -0.8900 31 1 3.8507 0.5686 0.8426 32 1 3.9783 2.1767 0.0902 33 1 6.1425 -0.9982 -3.8183 34 1 5.8489 3.0879 -0.3303 35 1 6.2662 1.3728 -0.5595 36 1 7.2516 2.6390 -1.3300 37 1 5.0123 3.0393 -4.1970 38 1 6.1430 4.6136 -1.0848 39 1 7.8321 6.3885 -0.8850 40 1 9.2086 7.0092 -2.8269 41 1 7.2352 4.0666 -5.2013 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837233210.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:40 Heat of formation + Delta-G solvation = -41.172344 kcal Electronic energy + Delta-G solvation = -25088.350016 eV Core-core repulsion = 21380.920374 eV Total energy + Delta-G solvation = -3707.429641 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.80910 -40.05207 -38.58273 -37.52031 -36.26118 -35.61444 -33.79995 -32.08135 -31.08581 -30.33687 -28.01586 -27.27540 -26.67145 -24.60225 -23.46700 -23.32445 -21.92708 -20.03268 -18.37683 -17.59146 -17.49832 -17.19607 -17.04806 -16.60039 -16.41908 -16.08440 -15.88852 -15.51371 -15.49371 -14.83928 -14.54910 -14.26465 -14.11949 -13.69925 -13.43415 -13.38269 -13.21542 -12.91581 -12.81641 -12.68885 -12.65651 -12.47072 -12.41017 -12.21743 -12.14424 -12.08505 -11.87067 -11.78614 -10.94909 -10.61603 -10.49832 -10.30878 -9.73636 -9.25290 -9.09564 -8.15304 -5.54862 -0.20357 0.27378 0.95623 1.15985 1.40832 1.45738 1.52189 2.34413 2.55399 2.78317 3.03632 3.23982 3.33082 3.83197 3.91535 4.13766 4.19752 4.28156 4.31035 4.35065 4.46102 4.49985 4.52396 4.58028 4.61176 4.68335 4.68914 4.85255 4.91255 4.95651 5.03685 5.13099 5.19600 5.30659 5.37196 5.41210 5.59127 5.70278 5.80591 5.88242 6.20292 6.43768 7.05719 7.43416 7.73676 8.10730 8.95722 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.014865 B = 0.003539 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.191036 B = 7909.361121 C = 9114.530530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.404 6.404 3 C 0.047 3.953 4 C 0.125 3.875 5 N -0.550 5.550 6 C -0.267 4.267 7 H 0.086 0.914 8 C -0.036 4.036 9 N -0.910 5.910 10 Si 0.971 3.029 11 H -0.298 1.298 12 H -0.288 1.288 13 H -0.257 1.257 14 C 0.602 3.398 15 O -0.586 6.586 16 C -0.110 4.110 17 C -0.096 4.096 18 C -0.101 4.101 19 C -0.042 4.042 20 C -0.107 4.107 21 C -0.097 4.097 22 C -0.112 4.112 23 C -0.043 4.043 24 Cl -0.075 7.075 25 C -0.119 4.119 26 H 0.087 0.913 27 H 0.061 0.939 28 H 0.028 0.972 29 H 0.085 0.915 30 H 0.020 0.980 31 H 0.079 0.921 32 H 0.099 0.901 33 H 0.258 0.742 34 H 0.099 0.901 35 H 0.055 0.945 36 H 0.067 0.933 37 H 0.099 0.901 38 H 0.151 0.849 39 H 0.172 0.828 40 H 0.157 0.843 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.036 14.937 7.866 17.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.323 6.323 3 C -0.031 4.031 4 C 0.001 3.999 5 N -0.278 5.278 6 C -0.395 4.395 7 H 0.103 0.897 8 C -0.233 4.233 9 N -0.554 5.554 10 Si 0.798 3.202 11 H -0.226 1.226 12 H -0.214 1.214 13 H -0.181 1.181 14 C 0.398 3.602 15 O -0.467 6.467 16 C -0.114 4.114 17 C -0.152 4.152 18 C -0.121 4.121 19 C -0.042 4.042 20 C -0.125 4.125 21 C -0.115 4.115 22 C -0.130 4.130 23 C -0.069 4.069 24 Cl -0.047 7.047 25 C -0.137 4.137 26 H 0.106 0.894 27 H 0.080 0.920 28 H 0.047 0.953 29 H 0.103 0.897 30 H 0.039 0.961 31 H 0.097 0.903 32 H 0.117 0.883 33 H 0.068 0.932 34 H 0.118 0.882 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.117 0.883 38 H 0.169 0.831 39 H 0.189 0.811 40 H 0.175 0.825 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 3.062 14.681 7.140 16.610 hybrid contribution -0.393 -1.305 -1.448 1.988 sum 2.670 13.376 5.692 14.780 Atomic orbital electron populations 1.22824 0.80823 1.03061 1.00100 1.88007 1.20385 1.28621 1.95318 1.23243 0.95622 0.84594 0.99664 1.21478 0.91659 0.99198 0.87526 1.42560 1.71080 1.04736 1.09387 1.19504 1.24118 0.81859 1.14025 0.89655 1.25776 0.95415 1.02739 0.99398 1.69381 1.28010 1.38067 1.19950 0.85217 0.76388 0.80117 0.78467 1.22572 1.21411 1.18109 1.17939 0.81806 0.78161 0.82339 1.90499 1.51968 1.67922 1.36268 1.22238 0.96867 0.94058 0.98200 1.20902 0.97398 1.02594 0.94348 1.21854 0.97726 0.94890 0.97610 1.18905 0.95359 0.95619 0.94363 1.21941 0.98598 0.95331 0.96602 1.21436 0.94101 0.96373 0.99557 1.21459 1.00815 1.00233 0.90496 1.20897 0.96538 0.99231 0.90252 1.98356 1.69730 1.92054 1.44521 1.21238 0.95974 0.97211 0.99320 0.89434 0.92010 0.95305 0.89673 0.96121 0.90251 0.88344 0.93201 0.88242 0.92610 0.91437 0.88335 0.83143 0.81068 0.82537 0.86133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.81 11.01 113.37 1.25 2.06 16 2 O -0.40 -15.50 10.03 -148.98 -1.49 -17.00 16 3 C 0.05 1.58 6.28 71.98 0.45 2.04 16 4 C 0.13 4.54 5.39 86.38 0.47 5.01 16 5 N -0.55 -26.94 1.88 -640.57 -1.20 -28.14 16 6 C -0.27 -14.60 9.16 84.15 0.77 -13.83 16 7 H 0.09 4.61 7.71 -2.91 -0.02 4.59 16 8 C -0.04 -2.02 5.15 84.98 0.44 -1.58 16 9 N -0.91 -53.99 10.92 21.69 0.24 -53.75 16 10 Si 0.97 46.64 29.58 68.60 2.03 48.67 16 11 H -0.30 -14.89 7.11 99.48 0.71 -14.18 16 12 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 13 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 14 C 0.60 31.18 3.94 86.32 0.34 31.52 16 15 O -0.59 -35.84 16.54 -4.55 -0.08 -35.92 16 16 C -0.11 -4.63 5.46 -18.54 -0.10 -4.73 16 17 C -0.10 -3.20 6.79 71.23 0.48 -2.72 16 18 C -0.10 -3.99 9.34 23.86 0.22 -3.77 16 19 C -0.04 -1.30 5.15 -20.15 -0.10 -1.40 16 20 C -0.11 -2.49 7.79 22.58 0.18 -2.31 16 21 C -0.10 -1.70 10.03 22.22 0.22 -1.47 16 22 C -0.11 -2.14 9.82 22.37 0.22 -1.92 16 23 C -0.04 -1.05 6.31 22.28 0.14 -0.91 16 24 Cl -0.08 -1.74 28.95 -2.72 -0.08 -1.81 16 25 C -0.12 -3.52 9.58 22.60 0.22 -3.30 16 26 H 0.09 2.29 8.14 -2.38 -0.02 2.27 16 27 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.08 2.75 8.04 -2.39 -0.02 2.73 16 32 H 0.10 2.87 6.27 -2.38 -0.01 2.86 16 33 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 34 H 0.10 2.38 5.99 -2.39 -0.01 2.36 16 35 H 0.05 2.16 7.42 -2.39 -0.02 2.14 16 36 H 0.07 2.13 6.56 -2.39 -0.02 2.12 16 37 H 0.10 4.42 7.53 -2.91 -0.02 4.40 16 38 H 0.15 3.01 5.50 -2.91 -0.02 2.99 16 39 H 0.17 1.65 8.06 -2.91 -0.02 1.62 16 40 H 0.16 2.12 8.06 -2.91 -0.02 2.09 16 41 H 0.12 3.75 8.06 -2.91 -0.02 3.72 16 Total: -1.00 -75.47 358.64 5.65 -69.82 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: 1.04 Total: 15.46 kcal Atomic # 6 Polarization: -2.52 SS G_CDS: 5.19 Total: 2.67 kcal Atomic # 7 Polarization: -80.93 SS G_CDS: -0.97 Total: -81.89 kcal Atomic # 8 Polarization: -51.35 SS G_CDS: -1.57 Total: -52.92 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.67 kcal Atomic # 17 Polarization: -1.74 SS G_CDS: -0.08 Total: -1.81 kcal Total: -75.47 5.65 -69.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837233210.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.648 kcal (2) G-P(sol) polarization free energy of solvation -75.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds