Wall clock time and date at job start Tue Mar 31 2020 13:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42905 * 114.00282 * 2 1 4 4 C 1.52997 * 109.47631 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.46978 * 64.99713 * 4 3 2 6 6 C 1.36723 * 120.00104 * 276.17384 * 5 4 3 7 7 H 1.07995 * 119.99936 * 342.11183 * 6 5 4 8 8 C 1.39117 * 119.99891 * 162.11720 * 6 5 4 9 9 N 1.31329 * 119.99993 * 356.18095 * 8 6 5 10 10 Si 1.86795 * 119.99691 * 176.18727 * 8 6 5 11 11 H 1.48496 * 109.47282 * 359.97438 * 10 8 6 12 12 H 1.48503 * 109.47117 * 119.99883 * 10 8 6 13 13 H 1.48502 * 109.46901 * 239.99292 * 10 8 6 14 14 C 1.34782 * 119.99627 * 96.17436 * 5 4 3 15 15 O 1.21764 * 119.99630 * 126.59883 * 14 5 4 16 16 C 1.46182 * 119.99887 * 306.59536 * 14 5 4 17 17 C 1.50700 * 120.00416 * 312.39561 * 16 14 5 18 18 C 1.35018 * 120.00142 * 132.39974 * 16 14 5 19 19 C 1.47097 * 119.99533 * 357.99283 * 18 16 14 20 20 C 1.39913 * 120.15536 * 137.19221 * 19 18 16 21 21 C 1.37826 * 119.83610 * 179.97438 * 20 19 18 22 22 C 1.38560 * 120.15863 * 359.97438 * 21 20 19 23 23 Cl 1.73597 * 119.83730 * 179.97438 * 22 21 20 24 24 C 1.38565 * 120.32616 * 0.25898 * 22 21 20 25 25 C 1.37821 * 120.15698 * 359.48431 * 24 22 21 26 26 H 1.08999 * 109.47293 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47173 * 300.00388 * 1 2 3 28 28 H 1.09000 * 109.47343 * 59.99735 * 1 2 3 29 29 H 1.09006 * 109.46778 * 59.99654 * 3 2 1 30 30 H 1.09003 * 109.46763 * 300.00319 * 3 2 1 31 31 H 1.09000 * 109.46812 * 305.00115 * 4 3 2 32 32 H 1.08998 * 109.47292 * 185.00222 * 4 3 2 33 33 H 0.96999 * 119.99861 * 185.01213 * 9 8 6 34 34 H 1.09002 * 109.47316 * 263.99129 * 17 16 14 35 35 H 1.09003 * 109.46768 * 23.98675 * 17 16 14 36 36 H 1.08996 * 109.47737 * 143.98665 * 17 16 14 37 37 H 1.07997 * 120.00255 * 177.99844 * 18 16 14 38 38 H 1.07999 * 120.08077 * 359.95492 * 20 19 18 39 39 H 1.07999 * 119.92278 * 180.02562 * 21 20 19 40 40 H 1.07993 * 119.91662 * 179.72071 * 24 22 21 41 41 H 1.07997 * 120.08253 * 180.25284 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9757 0.5644 -1.2528 6 6 3.9760 -0.7970 -1.3781 7 1 3.9368 -1.4204 -0.4970 8 6 4.0268 -1.3794 -2.6405 9 7 3.9987 -0.6233 -3.7140 10 14 4.1348 -3.2366 -2.8086 11 1 4.1516 -3.8557 -1.4589 12 1 2.9591 -3.7341 -3.5673 13 1 5.3799 -3.5964 -3.5334 14 6 4.3803 1.3360 -2.2811 15 8 5.4663 1.1426 -2.7967 16 6 3.5154 2.4049 -2.7775 17 6 2.0593 2.1299 -3.0519 18 6 4.0211 3.6386 -2.9902 19 6 5.4316 3.9186 -2.6807 20 6 6.2090 4.6730 -3.5662 21 6 7.5298 4.9319 -3.2694 22 6 8.0879 4.4474 -2.0973 23 17 9.7525 4.7779 -1.7322 24 6 7.3254 3.6955 -1.2180 25 6 6.0018 3.4331 -1.4990 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3634 0.5139 -0.8899 29 1 1.6885 1.8464 0.8900 30 1 1.6886 1.8464 -0.8900 31 1 3.8514 0.5683 0.8409 32 1 3.9785 2.1766 0.0890 33 1 3.9607 -1.0309 -4.5933 34 1 1.9250 1.9057 -4.1101 35 1 1.7319 1.2781 -2.4556 36 1 1.4679 3.0067 -2.7883 37 1 3.3900 4.4197 -3.3874 38 1 5.7753 5.0513 -4.4800 39 1 8.1311 5.5145 -3.9516 40 1 7.7682 3.3174 -0.3086 41 1 5.4076 2.8504 -0.8109 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837233698.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:44 Heat of formation + Delta-G solvation = -12.707858 kcal Electronic energy + Delta-G solvation = -26050.867475 eV Core-core repulsion = 22344.672147 eV Total energy + Delta-G solvation = -3706.195329 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.40477 -38.26582 -37.05321 -36.20318 -34.35706 -33.69595 -31.81343 -30.72811 -30.41055 -28.75256 -26.09173 -25.87286 -24.93202 -22.78941 -22.40648 -21.81427 -20.46383 -18.45180 -16.96789 -16.41909 -15.89864 -15.79245 -15.19276 -15.00168 -14.89552 -14.39411 -14.00177 -13.92864 -13.63528 -13.30113 -13.20093 -12.93652 -12.69192 -12.33849 -12.21735 -11.86103 -11.68257 -11.34662 -11.23389 -11.14434 -11.04690 -11.00130 -10.91128 -10.73395 -10.56790 -10.44197 -10.26833 -9.99627 -9.09798 -9.03822 -8.99151 -8.65133 -8.07971 -7.57668 -7.21540 -6.03266 -3.50042 1.27133 1.71336 2.39952 2.51121 3.33081 3.40287 3.43450 4.03966 4.27750 4.31134 4.46376 4.99704 5.11355 5.17638 5.23826 5.39186 5.54503 5.60097 5.61656 5.67887 5.75498 5.80313 5.86538 5.90330 5.98288 6.01201 6.07372 6.09066 6.24127 6.29976 6.33204 6.51279 6.56455 6.60468 6.64326 6.87381 7.07358 7.17132 7.31448 7.66297 7.76173 8.19716 9.11624 9.41940 9.69805 10.19856 11.07362 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.013766 B = 0.004442 C = 0.003971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2033.491644 B = 6301.328555 C = 7049.121178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.359 6.359 3 C 0.032 3.968 4 C 0.125 3.875 5 N -0.518 5.518 6 C -0.258 4.258 7 H 0.085 0.915 8 C 0.012 3.988 9 N -0.864 5.864 10 Si 0.924 3.076 11 H -0.274 1.274 12 H -0.288 1.288 13 H -0.288 1.288 14 C 0.569 3.431 15 O -0.501 6.501 16 C -0.078 4.078 17 C -0.109 4.109 18 C -0.154 4.154 19 C -0.012 4.012 20 C -0.105 4.105 21 C -0.113 4.113 22 C -0.044 4.044 23 Cl -0.090 7.090 24 C -0.104 4.104 25 C -0.081 4.081 26 H 0.078 0.922 27 H 0.028 0.972 28 H 0.033 0.967 29 H 0.033 0.967 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.263 0.737 34 H 0.070 0.930 35 H 0.085 0.915 36 H 0.051 0.949 37 H 0.120 0.880 38 H 0.127 0.873 39 H 0.126 0.874 40 H 0.127 0.873 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.854 10.715 4.631 12.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.277 6.277 3 C -0.047 4.047 4 C 0.000 4.000 5 N -0.245 5.245 6 C -0.386 4.386 7 H 0.103 0.897 8 C -0.190 4.190 9 N -0.507 5.507 10 Si 0.753 3.247 11 H -0.199 1.199 12 H -0.214 1.214 13 H -0.214 1.214 14 C 0.359 3.641 15 O -0.375 6.375 16 C -0.082 4.082 17 C -0.166 4.166 18 C -0.173 4.173 19 C -0.013 4.013 20 C -0.124 4.124 21 C -0.131 4.131 22 C -0.071 4.071 23 Cl -0.061 7.061 24 C -0.123 4.123 25 C -0.099 4.099 26 H 0.097 0.903 27 H 0.047 0.953 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.103 0.897 36 H 0.070 0.930 37 H 0.138 0.862 38 H 0.145 0.855 39 H 0.144 0.856 40 H 0.145 0.855 41 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.895 10.416 4.194 11.387 hybrid contribution -0.353 -0.827 -0.364 0.970 sum -2.248 9.589 3.830 10.567 Atomic orbital electron populations 1.22645 0.83209 1.01937 0.98748 1.88134 1.17522 1.27016 1.94991 1.23466 0.96547 0.85346 0.99322 1.21382 0.90985 0.97302 0.90343 1.42773 1.64826 1.05322 1.11572 1.19323 1.46240 0.80017 0.92995 0.89710 1.25022 0.99551 0.99133 0.95318 1.69520 1.49123 1.34270 0.97750 0.85891 0.77261 0.83638 0.77930 1.19896 1.21420 1.21432 1.16861 0.85271 0.80341 0.81663 1.90613 1.21023 1.67408 1.58414 1.22697 0.96527 0.93789 0.95224 1.20859 0.91408 1.01492 1.02797 1.21737 0.93042 0.96770 1.05757 1.19010 0.93878 0.94933 0.93432 1.21097 0.93055 0.99228 0.98996 1.20788 0.95502 1.01203 0.95654 1.20866 0.85044 1.03531 0.97609 1.98326 1.18548 1.94509 1.94720 1.20824 0.93869 0.98128 0.99458 1.21330 0.94430 0.97244 0.96922 0.90348 0.95320 0.94789 0.94864 0.92314 0.91180 0.91701 0.92574 0.91180 0.89664 0.93046 0.86194 0.85489 0.85594 0.85502 0.85582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.01 101.05 1.11 1.56 16 2 O -0.36 -6.64 9.88 -35.23 -0.35 -6.99 16 3 C 0.03 0.52 5.74 37.16 0.21 0.74 16 4 C 0.13 2.34 5.67 -4.04 -0.02 2.31 16 5 N -0.52 -12.25 2.27 -116.48 -0.26 -12.52 16 6 C -0.26 -6.81 8.84 -15.04 -0.13 -6.94 16 7 H 0.09 2.21 7.84 -52.49 -0.41 1.80 16 8 C 0.01 0.33 5.22 -17.44 -0.09 0.24 16 9 N -0.86 -24.66 10.17 55.50 0.56 -24.09 16 10 Si 0.92 21.96 29.56 -169.99 -5.02 16.94 16 11 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 12 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 13 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 14 C 0.57 13.81 1.69 -13.07 -0.02 13.79 16 15 O -0.50 -14.30 13.98 5.13 0.07 -14.23 16 16 C -0.08 -1.59 5.18 -102.58 -0.53 -2.12 16 17 C -0.11 -1.98 8.43 36.01 0.30 -1.68 16 18 C -0.15 -2.73 9.47 -37.13 -0.35 -3.08 16 19 C -0.01 -0.22 4.82 -105.05 -0.51 -0.73 16 20 C -0.11 -1.70 9.80 -39.11 -0.38 -2.08 16 21 C -0.11 -1.73 9.81 -39.61 -0.39 -2.12 16 22 C -0.04 -0.71 6.33 -39.34 -0.25 -0.96 16 23 Cl -0.09 -1.27 28.95 -51.86 -1.50 -2.77 16 24 C -0.10 -1.78 9.81 -39.61 -0.39 -2.16 16 25 C -0.08 -1.50 7.48 -39.11 -0.29 -1.79 16 26 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.97 4.32 -51.93 -0.22 0.75 16 31 H 0.07 1.28 8.09 -51.93 -0.42 0.86 16 32 H 0.06 1.06 6.03 -51.93 -0.31 0.75 16 33 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 34 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.08 1.71 5.79 -51.93 -0.30 1.41 16 36 H 0.05 0.73 8.12 -51.93 -0.42 0.31 16 37 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 38 H 0.13 1.73 8.06 -52.49 -0.42 1.31 16 39 H 0.13 1.61 8.06 -52.49 -0.42 1.18 16 40 H 0.13 1.95 8.06 -52.49 -0.42 1.53 16 41 H 0.13 2.37 4.53 -52.49 -0.24 2.13 16 LS Contribution 351.36 15.07 5.29 5.29 Total: -1.00 -32.28 351.36 -8.21 -40.49 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -5.27 Total: 2.91 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: -1.73 Total: -5.03 kcal Atomic # 7 Polarization: -36.91 SS G_CDS: 0.30 Total: -36.61 kcal Atomic # 8 Polarization: -20.94 SS G_CDS: -0.28 Total: -21.22 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Atomic # 17 Polarization: -1.27 SS G_CDS: -1.50 Total: -2.77 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.28 -8.21 -40.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837233698.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.779 kcal (2) G-P(sol) polarization free energy of solvation -32.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds