Wall clock time and date at job start Tue Mar 31 2020 13:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42905 * 114.00282 * 2 1 4 4 C 1.52997 * 109.47631 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.46978 * 64.99713 * 4 3 2 6 6 C 1.36723 * 120.00104 * 276.17384 * 5 4 3 7 7 H 1.07995 * 119.99936 * 342.11183 * 6 5 4 8 8 C 1.39117 * 119.99891 * 162.11720 * 6 5 4 9 9 N 1.31329 * 119.99993 * 356.18095 * 8 6 5 10 10 Si 1.86795 * 119.99691 * 176.18727 * 8 6 5 11 11 H 1.48496 * 109.47282 * 359.97438 * 10 8 6 12 12 H 1.48503 * 109.47117 * 119.99883 * 10 8 6 13 13 H 1.48502 * 109.46901 * 239.99292 * 10 8 6 14 14 C 1.34782 * 119.99627 * 96.17436 * 5 4 3 15 15 O 1.21764 * 119.99630 * 126.59883 * 14 5 4 16 16 C 1.46182 * 119.99887 * 306.59536 * 14 5 4 17 17 C 1.50700 * 120.00416 * 312.39561 * 16 14 5 18 18 C 1.35018 * 120.00142 * 132.39974 * 16 14 5 19 19 C 1.47097 * 119.99533 * 357.99283 * 18 16 14 20 20 C 1.39913 * 120.15536 * 137.19221 * 19 18 16 21 21 C 1.37826 * 119.83610 * 179.97438 * 20 19 18 22 22 C 1.38560 * 120.15863 * 359.97438 * 21 20 19 23 23 Cl 1.73597 * 119.83730 * 179.97438 * 22 21 20 24 24 C 1.38565 * 120.32616 * 0.25898 * 22 21 20 25 25 C 1.37821 * 120.15698 * 359.48431 * 24 22 21 26 26 H 1.08999 * 109.47293 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47173 * 300.00388 * 1 2 3 28 28 H 1.09000 * 109.47343 * 59.99735 * 1 2 3 29 29 H 1.09006 * 109.46778 * 59.99654 * 3 2 1 30 30 H 1.09003 * 109.46763 * 300.00319 * 3 2 1 31 31 H 1.09000 * 109.46812 * 305.00115 * 4 3 2 32 32 H 1.08998 * 109.47292 * 185.00222 * 4 3 2 33 33 H 0.96999 * 119.99861 * 185.01213 * 9 8 6 34 34 H 1.09002 * 109.47316 * 263.99129 * 17 16 14 35 35 H 1.09003 * 109.46768 * 23.98675 * 17 16 14 36 36 H 1.08996 * 109.47737 * 143.98665 * 17 16 14 37 37 H 1.07997 * 120.00255 * 177.99844 * 18 16 14 38 38 H 1.07999 * 120.08077 * 359.95492 * 20 19 18 39 39 H 1.07999 * 119.92278 * 180.02562 * 21 20 19 40 40 H 1.07993 * 119.91662 * 179.72071 * 24 22 21 41 41 H 1.07997 * 120.08253 * 180.25284 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9757 0.5644 -1.2528 6 6 3.9760 -0.7970 -1.3781 7 1 3.9368 -1.4204 -0.4970 8 6 4.0268 -1.3794 -2.6405 9 7 3.9987 -0.6233 -3.7140 10 14 4.1348 -3.2366 -2.8086 11 1 4.1516 -3.8557 -1.4589 12 1 2.9591 -3.7341 -3.5673 13 1 5.3799 -3.5964 -3.5334 14 6 4.3803 1.3360 -2.2811 15 8 5.4663 1.1426 -2.7967 16 6 3.5154 2.4049 -2.7775 17 6 2.0593 2.1299 -3.0519 18 6 4.0211 3.6386 -2.9902 19 6 5.4316 3.9186 -2.6807 20 6 6.2090 4.6730 -3.5662 21 6 7.5298 4.9319 -3.2694 22 6 8.0879 4.4474 -2.0973 23 17 9.7525 4.7779 -1.7322 24 6 7.3254 3.6955 -1.2180 25 6 6.0018 3.4331 -1.4990 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3634 0.5139 -0.8899 29 1 1.6885 1.8464 0.8900 30 1 1.6886 1.8464 -0.8900 31 1 3.8514 0.5683 0.8409 32 1 3.9785 2.1766 0.0890 33 1 3.9607 -1.0309 -4.5933 34 1 1.9250 1.9057 -4.1101 35 1 1.7319 1.2781 -2.4556 36 1 1.4679 3.0067 -2.7883 37 1 3.3900 4.4197 -3.3874 38 1 5.7753 5.0513 -4.4800 39 1 8.1311 5.5145 -3.9516 40 1 7.7682 3.3174 -0.3086 41 1 5.4076 2.8504 -0.8109 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837233698.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:43 Heat of formation + Delta-G solvation = -31.152326 kcal Electronic energy + Delta-G solvation = -26051.667287 eV Core-core repulsion = 22344.672147 eV Total energy + Delta-G solvation = -3706.995141 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.93996 -39.70282 -38.42896 -37.43956 -36.04134 -35.31040 -33.68877 -32.01417 -31.75046 -30.28268 -27.44353 -27.27765 -26.62861 -24.32458 -23.77483 -23.16864 -21.98749 -20.14436 -18.44275 -18.01929 -17.25900 -17.14026 -16.84671 -16.42547 -16.28315 -15.97864 -15.70582 -15.34962 -15.09675 -14.77859 -14.48368 -14.23002 -14.08273 -13.75267 -13.62310 -13.25890 -13.18083 -12.94981 -12.92934 -12.71035 -12.54820 -12.41445 -12.35278 -12.27388 -12.04664 -12.01980 -11.74050 -11.65568 -11.00123 -10.44555 -10.27331 -9.94145 -9.90888 -9.14487 -8.91125 -8.06352 -5.52874 -0.08092 0.43113 1.07276 1.16599 1.41687 1.45325 1.54245 2.36722 2.59114 2.81783 3.08500 3.30929 3.47272 3.85406 3.88603 3.95514 4.21708 4.32639 4.38156 4.43950 4.50842 4.53366 4.62009 4.67420 4.69988 4.74342 4.78846 4.84349 4.92337 4.95337 5.00366 5.11422 5.21500 5.25404 5.29394 5.51799 5.56656 5.62883 5.83223 5.94177 6.22360 6.57094 7.13468 7.55022 7.86184 8.33805 9.03696 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.013766 B = 0.004442 C = 0.003971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2033.491644 B = 6301.328555 C = 7049.121178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.397 6.397 3 C 0.037 3.963 4 C 0.120 3.880 5 N -0.535 5.535 6 C -0.261 4.261 7 H 0.079 0.921 8 C -0.039 4.039 9 N -0.894 5.894 10 Si 0.976 3.024 11 H -0.264 1.264 12 H -0.282 1.282 13 H -0.302 1.302 14 C 0.581 3.419 15 O -0.557 6.557 16 C -0.118 4.118 17 C -0.095 4.095 18 C -0.118 4.118 19 C -0.043 4.043 20 C -0.103 4.103 21 C -0.113 4.113 22 C -0.049 4.049 23 Cl -0.073 7.073 24 C -0.119 4.119 25 C -0.097 4.097 26 H 0.082 0.918 27 H 0.055 0.945 28 H 0.037 0.963 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.083 0.917 33 H 0.254 0.746 34 H 0.056 0.944 35 H 0.061 0.939 36 H 0.094 0.906 37 H 0.162 0.838 38 H 0.155 0.845 39 H 0.155 0.845 40 H 0.134 0.866 41 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.576 12.805 4.835 14.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.316 6.316 3 C -0.040 4.040 4 C -0.004 4.004 5 N -0.262 5.262 6 C -0.389 4.389 7 H 0.097 0.903 8 C -0.238 4.238 9 N -0.537 5.537 10 Si 0.804 3.196 11 H -0.188 1.188 12 H -0.208 1.208 13 H -0.229 1.229 14 C 0.373 3.627 15 O -0.435 6.435 16 C -0.122 4.122 17 C -0.152 4.152 18 C -0.137 4.137 19 C -0.043 4.043 20 C -0.121 4.121 21 C -0.131 4.131 22 C -0.075 4.075 23 Cl -0.044 7.044 24 C -0.138 4.138 25 C -0.115 4.115 26 H 0.100 0.900 27 H 0.073 0.927 28 H 0.056 0.944 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.101 0.899 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.112 0.888 37 H 0.179 0.821 38 H 0.173 0.827 39 H 0.173 0.827 40 H 0.152 0.848 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -2.655 12.518 4.444 13.546 hybrid contribution 0.009 -1.329 -0.317 1.366 sum -2.646 11.189 4.127 12.216 Atomic orbital electron populations 1.22804 0.81068 1.02786 1.00177 1.88065 1.20004 1.28224 1.95321 1.23354 0.94523 0.85126 1.01023 1.21543 0.93143 0.97776 0.87937 1.42922 1.65478 1.04644 1.13121 1.19437 1.45277 0.81641 0.92569 0.90306 1.25704 1.00227 1.02472 0.95371 1.69647 1.51515 1.35075 0.97509 0.85070 0.76503 0.79994 0.78005 1.18795 1.20823 1.22915 1.17430 0.84560 0.80322 0.80351 1.90565 1.23662 1.69492 1.59794 1.22529 0.97315 0.93811 0.98565 1.20741 0.90561 1.02389 1.01472 1.22179 0.93100 0.96568 1.01813 1.19289 0.94654 0.96280 0.94124 1.21444 0.93253 0.98068 0.99363 1.21158 0.95599 1.00756 0.95594 1.21046 0.85868 1.02942 0.97662 1.98331 1.17104 1.94315 1.94672 1.20979 0.93768 0.98725 1.00286 1.21342 0.95061 0.97632 0.97503 0.89951 0.92668 0.94415 0.91312 0.92141 0.91505 0.89882 0.93609 0.92504 0.92061 0.88789 0.82103 0.82706 0.82713 0.84833 0.86876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 11.01 113.37 1.25 1.99 16 2 O -0.40 -14.42 9.88 -148.98 -1.47 -15.89 16 3 C 0.04 1.19 5.74 71.98 0.41 1.60 16 4 C 0.12 4.46 5.67 86.38 0.49 4.95 16 5 N -0.53 -25.78 2.27 -640.61 -1.46 -27.23 16 6 C -0.26 -14.12 8.84 84.14 0.74 -13.37 16 7 H 0.08 4.23 7.84 -2.91 -0.02 4.21 16 8 C -0.04 -2.20 5.22 84.98 0.44 -1.76 16 9 N -0.89 -52.71 10.17 21.69 0.22 -52.49 16 10 Si 0.98 46.41 29.56 68.60 2.03 48.44 16 11 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 12 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 13 H -0.30 -14.88 7.11 99.48 0.71 -14.17 16 14 C 0.58 28.66 1.69 86.30 0.15 28.81 16 15 O -0.56 -32.81 13.98 -4.55 -0.06 -32.88 16 16 C -0.12 -4.73 5.18 -18.54 -0.10 -4.82 16 17 C -0.10 -3.34 8.43 71.24 0.60 -2.74 16 18 C -0.12 -3.91 9.47 23.86 0.23 -3.69 16 19 C -0.04 -1.51 4.82 -20.14 -0.10 -1.60 16 20 C -0.10 -3.06 9.80 22.58 0.22 -2.84 16 21 C -0.11 -3.17 9.81 22.25 0.22 -2.95 16 22 C -0.05 -1.50 6.33 22.42 0.14 -1.35 16 23 Cl -0.07 -1.95 28.95 -2.72 -0.08 -2.03 16 24 C -0.12 -4.02 9.81 22.25 0.22 -3.81 16 25 C -0.10 -3.58 7.48 22.57 0.17 -3.41 16 26 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 27 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 30 H 0.06 1.90 4.32 -2.39 -0.01 1.89 16 31 H 0.07 2.46 8.09 -2.39 -0.02 2.44 16 32 H 0.08 2.71 6.03 -2.39 -0.01 2.69 16 33 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 34 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.06 2.44 5.79 -2.39 -0.01 2.43 16 36 H 0.09 2.38 8.12 -2.39 -0.02 2.37 16 37 H 0.16 3.94 8.06 -2.91 -0.02 3.91 16 38 H 0.16 3.63 8.06 -2.91 -0.02 3.61 16 39 H 0.16 3.40 8.06 -2.91 -0.02 3.37 16 40 H 0.13 4.14 8.06 -2.91 -0.02 4.12 16 41 H 0.11 4.34 4.53 -2.91 -0.01 4.32 16 Total: -1.00 -72.77 351.36 5.31 -67.46 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: 1.05 Total: 19.59 kcal Atomic # 6 Polarization: -10.07 SS G_CDS: 5.09 Total: -4.98 kcal Atomic # 7 Polarization: -78.49 SS G_CDS: -1.23 Total: -79.72 kcal Atomic # 8 Polarization: -47.23 SS G_CDS: -1.54 Total: -48.76 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.44 kcal Atomic # 17 Polarization: -1.95 SS G_CDS: -0.08 Total: -2.03 kcal Total: -72.77 5.31 -67.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837233698.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.310 kcal (2) G-P(sol) polarization free energy of solvation -72.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds