Wall clock time and date at job start Tue Mar 31 2020 13:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42899 * 113.99957 * 2 1 4 4 C 1.53004 * 109.47062 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.46995 * 64.99313 * 4 3 2 6 6 C 1.36721 * 120.00447 * 270.00459 * 5 4 3 7 7 H 1.07994 * 120.00260 * 67.48476 * 6 5 4 8 8 C 1.39118 * 119.99934 * 247.48958 * 6 5 4 9 9 N 1.31328 * 120.00337 * 185.69970 * 8 6 5 10 10 Si 1.86804 * 119.99981 * 5.69696 * 8 6 5 11 11 H 1.48504 * 109.46991 * 95.04237 * 10 8 6 12 12 H 1.48498 * 109.47222 * 215.04341 * 10 8 6 13 13 H 1.48503 * 109.47191 * 335.04549 * 10 8 6 14 14 C 1.34780 * 119.99546 * 90.00253 * 5 4 3 15 15 O 1.21758 * 120.00334 * 7.13789 * 14 5 4 16 16 C 1.46191 * 119.99997 * 187.13470 * 14 5 4 17 17 C 1.50702 * 120.00028 * 9.64547 * 16 14 5 18 18 C 1.35009 * 120.00174 * 189.64753 * 16 14 5 19 19 C 1.47104 * 120.00200 * 172.47933 * 18 16 14 20 20 C 1.39901 * 120.15675 * 142.51576 * 19 18 16 21 21 C 1.37825 * 119.83611 * 179.97438 * 20 19 18 22 22 C 1.38560 * 120.16206 * 359.97438 * 21 20 19 23 23 Cl 1.73594 * 119.84154 * 179.97438 * 22 21 20 24 24 C 1.38559 * 120.32002 * 0.25068 * 22 21 20 25 25 C 1.37824 * 120.16168 * 359.49774 * 24 22 21 26 26 H 1.09007 * 109.47048 * 300.00476 * 1 2 3 27 27 H 1.08993 * 109.46913 * 60.00092 * 1 2 3 28 28 H 1.08991 * 109.47253 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47333 * 60.00055 * 3 2 1 30 30 H 1.09003 * 109.46797 * 299.99584 * 3 2 1 31 31 H 1.09000 * 109.46728 * 305.00256 * 4 3 2 32 32 H 1.08994 * 109.47396 * 184.99818 * 4 3 2 33 33 H 0.96995 * 120.00144 * 180.02562 * 9 8 6 34 34 H 1.08998 * 109.47078 * 272.76814 * 17 16 14 35 35 H 1.09004 * 109.47171 * 32.76608 * 17 16 14 36 36 H 1.08998 * 109.47187 * 152.76710 * 17 16 14 37 37 H 1.08004 * 120.00375 * 352.48171 * 18 16 14 38 38 H 1.08001 * 120.08771 * 359.97438 * 20 19 18 39 39 H 1.08003 * 119.92655 * 179.97438 * 21 20 19 40 40 H 1.08002 * 119.92185 * 179.72148 * 24 22 21 41 41 H 1.08004 * 120.08219 * 180.25159 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5638 -1.2508 6 6 4.0976 -0.7955 -1.3342 7 1 3.2176 -1.4198 -1.2878 8 6 5.3542 -1.3745 -1.4787 9 7 5.4626 -2.6691 -1.6711 10 14 6.8876 -0.3105 -1.3992 11 1 7.4307 -0.3275 -0.0171 12 1 7.9078 -0.8415 -2.3385 13 1 6.5432 1.0833 -1.7786 14 6 4.2634 1.3327 -2.3200 15 8 4.2821 2.5452 -2.2105 16 6 4.5519 0.7109 -3.6112 17 6 4.3188 -0.7652 -3.8056 18 6 5.0273 1.4591 -4.6296 19 6 5.4734 0.8111 -5.8726 20 6 5.2282 1.4183 -7.1089 21 6 5.6495 0.8056 -8.2693 22 6 6.3149 -0.4085 -8.2136 23 17 6.8413 -1.1732 -9.6804 24 6 6.5570 -1.0180 -6.9931 25 6 6.1462 -0.4146 -5.8240 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.6887 1.8464 0.8899 30 1 1.6886 1.8463 -0.8901 31 1 3.8507 0.5684 0.8427 32 1 3.9785 2.1764 0.0902 33 1 6.3389 -3.0728 -1.7715 34 1 5.2072 -1.3169 -3.4984 35 1 3.4680 -1.0813 -3.2019 36 1 4.1124 -0.9651 -4.8570 37 1 5.0801 2.5334 -4.5317 38 1 4.7101 2.3649 -7.1539 39 1 5.4607 1.2729 -9.2245 40 1 7.0722 -1.9666 -6.9574 41 1 6.3392 -0.8889 -4.8731 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837233700.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:47 Heat of formation + Delta-G solvation = -23.164460 kcal Electronic energy + Delta-G solvation = -25464.124463 eV Core-core repulsion = 21757.475702 eV Total energy + Delta-G solvation = -3706.648761 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.64073 -38.89649 -37.24787 -36.48085 -35.01865 -34.30213 -32.31684 -31.05165 -30.21189 -28.94933 -26.42600 -25.90774 -24.69704 -23.35111 -22.45057 -21.97666 -20.14744 -18.86328 -16.99447 -16.64979 -16.12006 -15.93902 -15.51581 -15.19032 -14.98293 -14.78120 -14.45995 -14.15767 -13.64496 -13.47302 -13.42384 -13.39558 -13.03327 -12.67326 -12.27455 -11.98561 -11.73311 -11.56351 -11.43163 -11.37261 -11.29515 -11.05620 -10.87200 -10.74802 -10.65752 -10.53964 -10.47572 -10.13151 -9.28299 -9.20933 -8.92480 -8.90524 -8.48352 -7.73221 -7.44597 -6.49133 -4.30882 0.93694 1.44976 2.18765 2.27412 3.06719 3.17074 3.29512 3.80093 4.05620 4.19445 4.32433 4.42295 4.80092 4.92228 4.96788 5.17406 5.43716 5.50445 5.51069 5.58703 5.71251 5.78770 5.81061 5.87275 5.91028 5.94619 5.99659 6.06148 6.26224 6.31241 6.39148 6.47604 6.53474 6.74141 6.89967 6.91854 6.97110 7.14220 7.57300 7.62457 7.71537 7.81996 8.47940 8.96492 9.15159 9.62096 10.55859 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.016428 B = 0.003779 C = 0.003546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.002185 B = 7408.510962 C = 7894.953396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.367 6.367 3 C 0.055 3.945 4 C 0.106 3.894 5 N -0.461 5.461 6 C -0.326 4.326 7 H 0.109 0.891 8 C 0.080 3.920 9 N -0.859 5.859 10 Si 0.846 3.154 11 H -0.273 1.273 12 H -0.276 1.276 13 H -0.251 1.251 14 C 0.526 3.474 15 O -0.596 6.596 16 C -0.089 4.089 17 C -0.118 4.118 18 C -0.126 4.126 19 C -0.027 4.027 20 C -0.103 4.103 21 C -0.113 4.113 22 C -0.043 4.043 23 Cl -0.084 7.084 24 C -0.109 4.109 25 C -0.095 4.095 26 H 0.031 0.969 27 H 0.033 0.967 28 H 0.081 0.919 29 H 0.044 0.956 30 H 0.045 0.955 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.276 0.724 34 H 0.090 0.910 35 H 0.106 0.894 36 H 0.032 0.968 37 H 0.129 0.871 38 H 0.132 0.868 39 H 0.129 0.871 40 H 0.132 0.868 41 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.849 3.529 -7.034 8.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.285 6.285 3 C -0.023 4.023 4 C -0.018 4.018 5 N -0.181 5.181 6 C -0.454 4.454 7 H 0.126 0.874 8 C -0.127 4.127 9 N -0.494 5.494 10 Si 0.671 3.329 11 H -0.198 1.198 12 H -0.202 1.202 13 H -0.174 1.174 14 C 0.319 3.681 15 O -0.482 6.482 16 C -0.092 4.092 17 C -0.173 4.173 18 C -0.146 4.146 19 C -0.027 4.027 20 C -0.121 4.121 21 C -0.132 4.132 22 C -0.069 4.069 23 Cl -0.055 7.055 24 C -0.128 4.128 25 C -0.113 4.113 26 H 0.050 0.950 27 H 0.052 0.948 28 H 0.099 0.901 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.087 0.913 34 H 0.108 0.892 35 H 0.124 0.876 36 H 0.051 0.949 37 H 0.147 0.853 38 H 0.150 0.850 39 H 0.147 0.853 40 H 0.150 0.850 41 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -1.567 3.677 -7.075 8.126 hybrid contribution 0.736 0.528 0.015 0.906 sum -0.831 4.205 -7.060 8.259 Atomic orbital electron populations 1.22661 0.82788 1.02117 0.98958 1.88109 1.17969 1.27344 1.95097 1.22936 0.95421 0.84788 0.99183 1.21639 0.91388 0.99148 0.89582 1.43374 1.60138 1.07011 1.07592 1.18895 0.94526 0.79449 1.52519 0.87406 1.25699 0.97951 0.95252 0.93791 1.69638 1.25355 1.09706 1.44707 0.87107 0.83642 0.82930 0.79228 1.19834 1.20164 1.17425 1.18466 0.78654 0.86057 0.84959 1.90656 1.57199 1.14541 1.85776 1.22099 0.96596 0.97764 0.92716 1.21771 1.06018 0.90396 0.99142 1.21873 1.01768 0.99443 0.91560 1.19146 0.96390 0.93974 0.93231 1.21263 0.99756 1.00240 0.90867 1.20871 0.99055 0.94168 0.99112 1.20978 1.03231 0.95672 0.87062 1.98343 1.89458 1.81552 1.36175 1.20976 1.00838 1.00500 0.90494 1.21698 0.96441 0.94488 0.98633 0.95031 0.94796 0.90087 0.93805 0.93694 0.90063 0.90168 0.91331 0.89190 0.87620 0.94943 0.85299 0.85001 0.85259 0.85001 0.84183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.01 101.05 1.11 1.56 16 2 O -0.37 -6.89 9.90 -35.23 -0.35 -7.24 16 3 C 0.05 0.97 6.28 37.16 0.23 1.20 16 4 C 0.11 2.12 5.86 -4.04 -0.02 2.10 16 5 N -0.46 -10.58 1.67 -116.48 -0.19 -10.78 16 6 C -0.33 -7.92 5.80 -15.05 -0.09 -8.00 16 7 H 0.11 2.87 7.46 -52.49 -0.39 2.48 16 8 C 0.08 1.97 2.92 -17.44 -0.05 1.92 16 9 N -0.86 -21.72 13.39 55.50 0.74 -20.97 16 10 Si 0.85 19.70 26.04 -169.99 -4.43 15.27 16 11 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 13 H -0.25 -6.12 5.51 56.52 0.31 -5.81 16 14 C 0.53 12.37 5.06 -13.07 -0.07 12.30 16 15 O -0.60 -14.86 15.82 5.14 0.08 -14.78 16 16 C -0.09 -1.90 4.42 -102.58 -0.45 -2.35 16 17 C -0.12 -2.46 6.17 36.01 0.22 -2.24 16 18 C -0.13 -2.41 9.34 -37.13 -0.35 -2.76 16 19 C -0.03 -0.45 5.11 -105.06 -0.54 -0.99 16 20 C -0.10 -1.44 9.80 -39.11 -0.38 -1.82 16 21 C -0.11 -1.46 9.81 -39.61 -0.39 -1.85 16 22 C -0.04 -0.59 6.33 -39.34 -0.25 -0.84 16 23 Cl -0.08 -1.02 28.95 -51.86 -1.50 -2.53 16 24 C -0.11 -1.60 9.81 -39.61 -0.39 -1.99 16 25 C -0.09 -1.57 7.70 -39.11 -0.30 -1.87 16 26 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.08 1.59 8.04 -51.93 -0.42 1.18 16 32 H 0.08 1.57 7.33 -51.93 -0.38 1.19 16 33 H 0.28 6.62 8.31 -40.82 -0.34 6.28 16 34 H 0.09 2.00 3.36 -51.93 -0.17 1.83 16 35 H 0.11 2.42 5.57 -51.93 -0.29 2.13 16 36 H 0.03 0.62 6.23 -51.93 -0.32 0.29 16 37 H 0.13 2.44 7.55 -52.48 -0.40 2.05 16 38 H 0.13 1.57 8.06 -52.49 -0.42 1.14 16 39 H 0.13 1.36 8.06 -52.48 -0.42 0.93 16 40 H 0.13 1.72 8.06 -52.49 -0.42 1.30 16 41 H 0.14 2.53 5.74 -52.48 -0.30 2.23 16 LS Contribution 345.36 15.07 5.20 5.20 Total: -1.00 -27.45 345.36 -7.43 -34.88 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -5.28 Total: 6.58 kcal Atomic # 6 Polarization: -3.93 SS G_CDS: -1.71 Total: -5.64 kcal Atomic # 7 Polarization: -32.30 SS G_CDS: 0.55 Total: -31.75 kcal Atomic # 8 Polarization: -21.75 SS G_CDS: -0.27 Total: -22.02 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -4.43 Total: 15.27 kcal Atomic # 17 Polarization: -1.02 SS G_CDS: -1.50 Total: -2.53 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -27.45 -7.43 -34.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837233700.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.716 kcal (2) G-P(sol) polarization free energy of solvation -27.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds