Wall clock time and date at job start Tue Mar 31 2020 13:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42899 * 113.99957 * 2 1 4 4 C 1.53004 * 109.47062 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.46995 * 64.99313 * 4 3 2 6 6 C 1.36721 * 120.00447 * 270.00459 * 5 4 3 7 7 H 1.07994 * 120.00260 * 67.48476 * 6 5 4 8 8 C 1.39118 * 119.99934 * 247.48958 * 6 5 4 9 9 N 1.31328 * 120.00337 * 185.69970 * 8 6 5 10 10 Si 1.86804 * 119.99981 * 5.69696 * 8 6 5 11 11 H 1.48504 * 109.46991 * 95.04237 * 10 8 6 12 12 H 1.48498 * 109.47222 * 215.04341 * 10 8 6 13 13 H 1.48503 * 109.47191 * 335.04549 * 10 8 6 14 14 C 1.34780 * 119.99546 * 90.00253 * 5 4 3 15 15 O 1.21758 * 120.00334 * 7.13789 * 14 5 4 16 16 C 1.46191 * 119.99997 * 187.13470 * 14 5 4 17 17 C 1.50702 * 120.00028 * 9.64547 * 16 14 5 18 18 C 1.35009 * 120.00174 * 189.64753 * 16 14 5 19 19 C 1.47104 * 120.00200 * 172.47933 * 18 16 14 20 20 C 1.39901 * 120.15675 * 142.51576 * 19 18 16 21 21 C 1.37825 * 119.83611 * 179.97438 * 20 19 18 22 22 C 1.38560 * 120.16206 * 359.97438 * 21 20 19 23 23 Cl 1.73594 * 119.84154 * 179.97438 * 22 21 20 24 24 C 1.38559 * 120.32002 * 0.25068 * 22 21 20 25 25 C 1.37824 * 120.16168 * 359.49774 * 24 22 21 26 26 H 1.09007 * 109.47048 * 300.00476 * 1 2 3 27 27 H 1.08993 * 109.46913 * 60.00092 * 1 2 3 28 28 H 1.08991 * 109.47253 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47333 * 60.00055 * 3 2 1 30 30 H 1.09003 * 109.46797 * 299.99584 * 3 2 1 31 31 H 1.09000 * 109.46728 * 305.00256 * 4 3 2 32 32 H 1.08994 * 109.47396 * 184.99818 * 4 3 2 33 33 H 0.96995 * 120.00144 * 180.02562 * 9 8 6 34 34 H 1.08998 * 109.47078 * 272.76814 * 17 16 14 35 35 H 1.09004 * 109.47171 * 32.76608 * 17 16 14 36 36 H 1.08998 * 109.47187 * 152.76710 * 17 16 14 37 37 H 1.08004 * 120.00375 * 352.48171 * 18 16 14 38 38 H 1.08001 * 120.08771 * 359.97438 * 20 19 18 39 39 H 1.08003 * 119.92655 * 179.97438 * 21 20 19 40 40 H 1.08002 * 119.92185 * 179.72148 * 24 22 21 41 41 H 1.08004 * 120.08219 * 180.25159 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5638 -1.2508 6 6 4.0976 -0.7955 -1.3342 7 1 3.2176 -1.4198 -1.2878 8 6 5.3542 -1.3745 -1.4787 9 7 5.4626 -2.6691 -1.6711 10 14 6.8876 -0.3105 -1.3992 11 1 7.4307 -0.3275 -0.0171 12 1 7.9078 -0.8415 -2.3385 13 1 6.5432 1.0833 -1.7786 14 6 4.2634 1.3327 -2.3200 15 8 4.2821 2.5452 -2.2105 16 6 4.5519 0.7109 -3.6112 17 6 4.3188 -0.7652 -3.8056 18 6 5.0273 1.4591 -4.6296 19 6 5.4734 0.8111 -5.8726 20 6 5.2282 1.4183 -7.1089 21 6 5.6495 0.8056 -8.2693 22 6 6.3149 -0.4085 -8.2136 23 17 6.8413 -1.1732 -9.6804 24 6 6.5570 -1.0180 -6.9931 25 6 6.1462 -0.4146 -5.8240 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.6887 1.8464 0.8899 30 1 1.6886 1.8463 -0.8901 31 1 3.8507 0.5684 0.8427 32 1 3.9785 2.1764 0.0902 33 1 6.3389 -3.0728 -1.7715 34 1 5.2072 -1.3169 -3.4984 35 1 3.4680 -1.0813 -3.2019 36 1 4.1124 -0.9651 -4.8570 37 1 5.0801 2.5334 -4.5317 38 1 4.7101 2.3649 -7.1539 39 1 5.4607 1.2729 -9.2245 40 1 7.0722 -1.9666 -6.9574 41 1 6.3392 -0.8889 -4.8731 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837233700.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:46 Heat of formation + Delta-G solvation = -37.397989 kcal Electronic energy + Delta-G solvation = -25464.741675 eV Core-core repulsion = 21757.475702 eV Total energy + Delta-G solvation = -3707.265973 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.25877 -40.22239 -38.64652 -37.57026 -36.84541 -35.77013 -34.11330 -32.22061 -31.65925 -30.37260 -27.99168 -27.19441 -26.47426 -24.85840 -23.63422 -23.34772 -21.74325 -20.53524 -18.58738 -18.01525 -17.64596 -17.48075 -16.95611 -16.69121 -16.37558 -16.10888 -16.02669 -15.72226 -15.24036 -14.97195 -14.78811 -14.58153 -14.52096 -14.24292 -13.90788 -13.36337 -13.19553 -12.97075 -12.88086 -12.71201 -12.67783 -12.62524 -12.42802 -12.28536 -12.19782 -12.02461 -11.95783 -11.75693 -10.94640 -10.61906 -10.48197 -10.25245 -10.01410 -9.34838 -9.06051 -8.41086 -6.23274 -0.38124 0.31785 0.80048 1.11408 1.18661 1.27278 1.39290 2.16354 2.38587 2.68659 2.72872 2.89741 3.03685 3.76256 3.80546 3.89908 4.15093 4.21159 4.25591 4.31314 4.35452 4.43324 4.45928 4.57075 4.58838 4.66978 4.69458 4.86597 4.89846 4.96266 5.04728 5.09532 5.16384 5.21958 5.32367 5.40478 5.62749 5.73996 5.79914 5.95928 5.99773 6.36604 6.51515 7.05624 7.32507 7.78536 8.67530 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.016428 B = 0.003779 C = 0.003546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.002185 B = 7408.510962 C = 7894.953396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.401 6.401 3 C 0.063 3.937 4 C 0.098 3.902 5 N -0.469 5.469 6 C -0.313 4.313 7 H 0.080 0.920 8 C 0.065 3.935 9 N -0.885 5.885 10 Si 0.884 3.116 11 H -0.275 1.275 12 H -0.268 1.268 13 H -0.267 1.267 14 C 0.522 3.478 15 O -0.618 6.618 16 C -0.133 4.133 17 C -0.093 4.093 18 C -0.088 4.088 19 C -0.057 4.057 20 C -0.090 4.090 21 C -0.106 4.106 22 C -0.039 4.039 23 Cl -0.066 7.066 24 C -0.115 4.115 25 C -0.105 4.105 26 H 0.056 0.944 27 H 0.037 0.963 28 H 0.090 0.910 29 H 0.079 0.921 30 H 0.033 0.967 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.279 0.721 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.045 0.955 37 H 0.130 0.870 38 H 0.157 0.843 39 H 0.162 0.838 40 H 0.144 0.856 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.807 4.453 -8.983 10.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.320 6.320 3 C -0.015 4.015 4 C -0.025 4.025 5 N -0.189 5.189 6 C -0.441 4.441 7 H 0.097 0.903 8 C -0.140 4.140 9 N -0.522 5.522 10 Si 0.709 3.291 11 H -0.200 1.200 12 H -0.193 1.193 13 H -0.192 1.192 14 C 0.315 3.685 15 O -0.506 6.506 16 C -0.136 4.136 17 C -0.149 4.149 18 C -0.109 4.109 19 C -0.057 4.057 20 C -0.108 4.108 21 C -0.125 4.125 22 C -0.065 4.065 23 Cl -0.037 7.037 24 C -0.134 4.134 25 C -0.123 4.123 26 H 0.075 0.925 27 H 0.056 0.944 28 H 0.108 0.892 29 H 0.097 0.903 30 H 0.052 0.948 31 H 0.100 0.900 32 H 0.101 0.899 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.064 0.936 37 H 0.148 0.852 38 H 0.174 0.826 39 H 0.179 0.821 40 H 0.161 0.839 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -1.533 4.587 -9.018 10.233 hybrid contribution 0.707 0.279 0.420 0.868 sum -0.826 4.866 -8.598 9.914 Atomic orbital electron populations 1.22860 0.80446 1.03267 1.00343 1.88054 1.20641 1.27938 1.95370 1.22818 0.93611 0.84789 1.00260 1.21798 0.93404 0.98958 0.88306 1.43467 1.60284 1.06541 1.08580 1.18491 0.93543 0.79801 1.52267 0.90262 1.25853 0.98883 0.95521 0.93715 1.69670 1.25850 1.10464 1.46197 0.86566 0.82456 0.81139 0.78963 1.20050 1.19290 1.19208 1.18820 0.78024 0.85913 0.85750 1.90615 1.58430 1.15233 1.86312 1.21998 1.00623 0.98077 0.92886 1.21409 1.04051 0.90240 0.99204 1.22104 0.97735 0.99365 0.91662 1.19114 0.98521 0.94723 0.93319 1.21511 0.98678 1.00714 0.89901 1.21216 0.97629 0.93558 1.00057 1.21155 1.02186 0.95809 0.87375 1.98358 1.89197 1.81307 1.34845 1.21079 1.00929 1.01015 0.90335 1.21568 0.97461 0.94700 0.98601 0.92520 0.94401 0.89177 0.90258 0.94844 0.90030 0.89870 0.91003 0.90662 0.90401 0.93615 0.85209 0.82560 0.82064 0.83869 0.86280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 11.01 113.37 1.25 1.99 16 2 O -0.40 -15.09 9.90 -148.98 -1.47 -16.57 16 3 C 0.06 2.20 6.28 71.98 0.45 2.66 16 4 C 0.10 3.99 5.86 86.38 0.51 4.49 16 5 N -0.47 -22.10 1.67 -640.62 -1.07 -23.17 16 6 C -0.31 -15.73 5.80 84.14 0.49 -15.24 16 7 H 0.08 4.44 7.46 -2.91 -0.02 4.42 16 8 C 0.07 3.29 2.92 84.98 0.25 3.54 16 9 N -0.89 -45.89 13.39 21.69 0.29 -45.60 16 10 Si 0.88 41.34 26.04 68.60 1.79 43.13 16 11 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 12 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 13 H -0.27 -13.22 5.51 99.48 0.55 -12.67 16 14 C 0.52 25.01 5.06 86.31 0.44 25.45 16 15 O -0.62 -31.21 15.82 -4.53 -0.07 -31.28 16 16 C -0.13 -5.78 4.42 -18.54 -0.08 -5.87 16 17 C -0.09 -4.01 6.17 71.24 0.44 -3.57 16 18 C -0.09 -3.33 9.34 23.86 0.22 -3.11 16 19 C -0.06 -1.80 5.11 -20.15 -0.10 -1.91 16 20 C -0.09 -2.23 9.80 22.57 0.22 -2.01 16 21 C -0.11 -2.32 9.81 22.25 0.22 -2.10 16 22 C -0.04 -0.94 6.33 22.42 0.14 -0.80 16 23 Cl -0.07 -1.40 28.95 -2.72 -0.08 -1.48 16 24 C -0.12 -3.17 9.81 22.25 0.22 -2.95 16 25 C -0.11 -3.42 7.70 22.58 0.17 -3.24 16 26 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 27 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 29 H 0.08 2.20 8.14 -2.39 -0.02 2.19 16 30 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.08 3.25 8.04 -2.39 -0.02 3.23 16 32 H 0.08 3.29 7.33 -2.39 -0.02 3.27 16 33 H 0.28 13.66 8.31 -92.71 -0.77 12.89 16 34 H 0.08 3.46 3.36 -2.39 -0.01 3.45 16 35 H 0.08 3.73 5.57 -2.38 -0.01 3.72 16 36 H 0.05 1.78 6.23 -2.39 -0.01 1.77 16 37 H 0.13 4.81 7.55 -2.91 -0.02 4.79 16 38 H 0.16 3.08 8.06 -2.91 -0.02 3.06 16 39 H 0.16 2.54 8.06 -2.91 -0.02 2.52 16 40 H 0.14 3.53 8.06 -2.91 -0.02 3.50 16 41 H 0.12 4.38 5.74 -2.91 -0.02 4.36 16 Total: -1.00 -60.02 345.36 5.10 -54.92 By element: Atomic # 1 Polarization: 21.84 SS G_CDS: 0.89 Total: 22.73 kcal Atomic # 6 Polarization: -7.50 SS G_CDS: 4.83 Total: -2.67 kcal Atomic # 7 Polarization: -67.99 SS G_CDS: -0.78 Total: -68.77 kcal Atomic # 8 Polarization: -46.31 SS G_CDS: -1.55 Total: -47.85 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 1.79 Total: 43.13 kcal Atomic # 17 Polarization: -1.40 SS G_CDS: -0.08 Total: -1.48 kcal Total: -60.02 5.10 -54.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837233700.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.518 kcal (2) G-P(sol) polarization free energy of solvation -60.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds