Wall clock time and date at job start Tue Mar 31 2020 14:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42901 * 114.00015 * 2 1 4 4 C 1.53000 * 109.47006 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.47075 * 65.00755 * 4 3 2 6 6 C 1.36723 * 119.99861 * 264.47191 * 5 4 3 7 7 H 1.08001 * 119.99876 * 137.96241 * 6 5 4 8 8 C 1.39118 * 119.99664 * 317.95912 * 6 5 4 9 9 N 1.31325 * 119.99969 * 342.14057 * 8 6 5 10 10 Si 1.86800 * 119.99983 * 162.13788 * 8 6 5 11 11 H 1.48508 * 109.46750 * 89.99937 * 10 8 6 12 12 H 1.48494 * 109.47288 * 209.99929 * 10 8 6 13 13 H 1.48498 * 109.47288 * 330.00478 * 10 8 6 14 14 C 1.34779 * 120.00659 * 84.46870 * 5 4 3 15 15 O 1.21767 * 119.99362 * 0.02562 * 14 5 4 16 16 C 1.46227 * 120.00524 * 180.02562 * 14 5 4 17 17 C 1.34976 * 119.99888 * 180.02562 * 16 14 5 18 18 C 1.50699 * 119.99441 * 179.97438 * 17 16 14 19 19 C 1.47145 * 120.00169 * 359.71415 * 17 16 14 20 20 C 1.39889 * 120.16805 * 295.00245 * 19 17 16 21 21 C 1.37870 * 119.85010 * 179.74528 * 20 19 17 22 22 C 1.38405 * 120.18408 * 0.55655 * 21 20 19 23 23 C 1.38503 * 120.34299 * 359.69656 * 22 21 20 24 24 Cl 1.73605 * 119.92806 * 180.02562 * 23 22 21 25 25 C 1.38017 * 120.14356 * 0.02562 * 23 22 21 26 26 H 1.08997 * 109.47508 * 59.99260 * 1 2 3 27 27 H 1.08994 * 109.47038 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46453 * 299.99445 * 1 2 3 29 29 H 1.09007 * 109.46828 * 60.00334 * 3 2 1 30 30 H 1.08994 * 109.47260 * 300.00751 * 3 2 1 31 31 H 1.08993 * 109.47132 * 305.00369 * 4 3 2 32 32 H 1.09004 * 109.46971 * 185.00298 * 4 3 2 33 33 H 0.97004 * 119.99649 * 180.02562 * 9 8 6 34 34 H 1.07997 * 119.99678 * 359.97438 * 16 14 5 35 35 H 1.09000 * 109.47150 * 269.71463 * 18 17 16 36 36 H 1.08998 * 109.47642 * 29.72165 * 18 17 16 37 37 H 1.09003 * 109.47125 * 149.72233 * 18 17 16 38 38 H 1.08008 * 120.07684 * 0.02562 * 20 19 17 39 39 H 1.07997 * 119.90609 * 180.27797 * 21 20 19 40 40 H 1.08010 * 119.82993 * 179.72243 * 22 21 20 41 41 H 1.08007 * 120.09431 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5646 -1.2528 6 6 4.2054 -0.7822 -1.3049 7 1 3.8725 -1.3542 -2.1584 8 6 4.8680 -1.4158 -0.2584 9 7 5.5737 -0.7099 0.5950 10 14 4.7537 -3.2704 -0.0672 11 1 5.8556 -3.9150 -0.8262 12 1 4.8671 -3.6279 1.3696 13 1 3.4479 -3.7428 -0.5934 14 6 4.1542 1.3216 -2.3535 15 8 3.9500 2.5211 -2.3070 16 6 4.5930 0.7025 -3.6035 17 6 4.7722 1.4609 -4.7056 18 6 5.2250 0.8229 -5.9936 19 6 4.5199 2.9095 -4.6509 20 6 3.2266 3.3896 -4.4193 21 6 2.9986 4.7482 -4.3641 22 6 4.0432 5.6372 -4.5487 23 6 5.3259 5.1705 -4.7838 24 17 6.6283 6.2952 -5.0132 25 6 5.5708 3.8132 -4.8362 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3632 0.5138 0.8901 29 1 1.6887 1.8463 0.8901 30 1 1.6886 1.8464 -0.8899 31 1 3.8515 0.5682 0.8408 32 1 3.9786 2.1765 0.0890 33 1 6.0360 -1.1517 1.3244 34 1 4.7745 -0.3613 -3.6445 35 1 6.3140 0.8301 -6.0394 36 1 4.8664 -0.2055 -6.0355 37 1 4.8222 1.3828 -6.8377 38 1 2.4093 2.6975 -4.2794 39 1 2.0013 5.1198 -4.1808 40 1 3.8573 6.7004 -4.5088 41 1 6.5714 3.4502 -5.0192 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837235164.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:17 Heat of formation + Delta-G solvation = -36.074393 kcal Electronic energy + Delta-G solvation = -25410.600993 eV Core-core repulsion = 21703.392415 eV Total energy + Delta-G solvation = -3707.208578 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.33740 -38.29898 -37.00415 -36.19578 -34.90173 -34.06457 -31.63434 -30.36153 -29.85256 -29.22963 -27.19462 -25.81342 -24.68180 -23.10641 -22.11964 -21.94449 -19.62416 -18.62433 -17.27652 -16.27333 -15.97678 -15.48602 -15.38439 -14.99105 -14.85370 -14.47749 -14.38855 -14.04315 -13.56596 -13.38588 -13.26069 -13.02204 -12.77583 -12.58035 -12.07803 -12.00329 -11.83422 -11.52847 -11.22569 -11.20689 -11.14158 -11.04636 -11.02964 -10.93128 -10.67369 -10.44042 -10.37393 -10.05301 -9.21536 -9.01868 -8.86695 -8.47968 -8.33552 -7.60535 -7.44057 -6.37188 -4.04862 1.48299 1.73954 2.17030 2.46957 3.15153 3.23626 3.29216 4.10343 4.12248 4.40462 4.50200 4.76713 5.02575 5.08935 5.21501 5.37986 5.57590 5.63264 5.67252 5.69971 5.77787 5.83116 5.87763 5.94500 5.99905 6.06084 6.13472 6.20865 6.26880 6.30591 6.41043 6.54868 6.67308 6.72552 6.90999 7.01834 7.14037 7.20876 7.30452 7.44065 7.79866 7.99674 8.35527 9.09627 9.51448 9.94624 10.65944 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.014343 B = 0.003997 C = 0.003616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.762055 B = 7003.117281 C = 7740.659424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.366 6.366 3 C 0.053 3.947 4 C 0.121 3.879 5 N -0.413 5.413 6 C -0.325 4.325 7 H 0.086 0.914 8 C 0.050 3.950 9 N -0.860 5.860 10 Si 0.914 3.086 11 H -0.278 1.278 12 H -0.283 1.283 13 H -0.267 1.267 14 C 0.484 3.516 15 O -0.596 6.596 16 C -0.132 4.132 17 C -0.082 4.082 18 C -0.106 4.106 19 C 0.004 3.996 20 C -0.038 4.038 21 C -0.117 4.117 22 C -0.118 4.118 23 C -0.039 4.039 24 Cl -0.092 7.092 25 C -0.105 4.105 26 H 0.031 0.969 27 H 0.077 0.923 28 H 0.030 0.970 29 H 0.038 0.962 30 H 0.042 0.958 31 H 0.105 0.895 32 H 0.071 0.929 33 H 0.270 0.730 34 H 0.132 0.868 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.062 0.938 38 H 0.116 0.884 39 H 0.121 0.879 40 H 0.121 0.879 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.456 4.937 -8.192 10.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.284 6.284 3 C -0.025 4.025 4 C -0.003 4.003 5 N -0.129 5.129 6 C -0.453 4.453 7 H 0.103 0.897 8 C -0.157 4.157 9 N -0.496 5.496 10 Si 0.741 3.259 11 H -0.204 1.204 12 H -0.208 1.208 13 H -0.192 1.192 14 C 0.275 3.725 15 O -0.484 6.484 16 C -0.152 4.152 17 C -0.085 4.085 18 C -0.163 4.163 19 C 0.004 3.996 20 C -0.056 4.056 21 C -0.135 4.135 22 C -0.137 4.137 23 C -0.066 4.066 24 Cl -0.064 7.064 25 C -0.124 4.124 26 H 0.050 0.950 27 H 0.096 0.904 28 H 0.048 0.952 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.123 0.877 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.150 0.850 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.134 0.866 39 H 0.139 0.861 40 H 0.139 0.861 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -4.215 5.389 -7.931 10.474 hybrid contribution -0.087 -0.753 0.551 0.937 sum -4.303 4.635 -7.380 9.719 Atomic orbital electron populations 1.22640 0.83385 1.01736 0.98833 1.88130 1.17411 1.27811 1.95050 1.23029 0.96472 0.84255 0.98706 1.21349 0.89088 0.98986 0.90890 1.43183 1.54866 1.07287 1.07566 1.19216 1.36262 0.82329 1.07530 0.89663 1.25400 0.93665 0.99915 0.96715 1.69887 1.27041 1.36817 1.15857 0.86145 0.78853 0.83177 0.77737 1.20436 1.20822 1.19179 1.18409 0.82128 0.86158 0.85771 1.90717 1.57726 1.14424 1.85560 1.23172 0.99333 1.00340 0.92397 1.20783 1.00639 0.91628 0.95412 1.20739 1.01225 1.00302 0.94038 1.18534 0.92712 0.91985 0.96384 1.21048 0.95974 0.94852 0.93755 1.20780 0.98308 0.93064 1.01387 1.20857 0.91079 0.99745 1.02049 1.20571 0.88770 0.90045 1.07185 1.98324 1.49993 1.62292 1.95781 1.20925 0.99092 0.90535 1.01849 0.95011 0.90421 0.95155 0.94345 0.93948 0.87748 0.91094 0.92021 0.85007 0.91300 0.91311 0.91924 0.86591 0.86087 0.86102 0.85837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 101.05 1.11 1.60 16 2 O -0.37 -7.60 10.44 -35.23 -0.37 -7.97 16 3 C 0.05 1.08 6.24 37.16 0.23 1.31 16 4 C 0.12 2.84 5.26 -4.04 -0.02 2.81 16 5 N -0.41 -10.15 2.44 -116.47 -0.28 -10.43 16 6 C -0.33 -8.10 8.05 -15.04 -0.12 -8.23 16 7 H 0.09 2.05 6.98 -52.49 -0.37 1.69 16 8 C 0.05 1.24 4.95 -17.44 -0.09 1.16 16 9 N -0.86 -22.65 11.66 55.50 0.65 -22.00 16 10 Si 0.91 19.57 29.59 -169.99 -5.03 14.54 16 11 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 12 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 13 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 14 C 0.48 11.36 7.40 -13.05 -0.10 11.27 16 15 O -0.60 -14.43 11.89 5.13 0.06 -14.37 16 16 C -0.13 -2.65 8.95 -37.53 -0.34 -2.99 16 17 C -0.08 -1.41 5.49 -102.17 -0.56 -1.97 16 18 C -0.11 -1.39 10.02 36.01 0.36 -1.03 16 19 C 0.00 0.08 3.82 -105.07 -0.40 -0.33 16 20 C -0.04 -0.66 6.98 -39.10 -0.27 -0.93 16 21 C -0.12 -1.82 10.03 -39.65 -0.40 -2.21 16 22 C -0.12 -1.80 9.82 -39.42 -0.39 -2.19 16 23 C -0.04 -0.63 6.31 -39.56 -0.25 -0.88 16 24 Cl -0.09 -1.33 28.95 -51.86 -1.50 -2.83 16 25 C -0.11 -1.79 9.56 -39.07 -0.37 -2.16 16 26 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.04 0.69 8.14 -51.92 -0.42 0.26 16 30 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.10 2.64 5.82 -51.93 -0.30 2.34 16 32 H 0.07 1.69 7.59 -51.93 -0.39 1.30 16 33 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 34 H 0.13 2.57 6.60 -52.49 -0.35 2.22 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.07 0.82 8.07 -51.93 -0.42 0.40 16 37 H 0.06 0.73 8.11 -51.93 -0.42 0.31 16 38 H 0.12 2.01 8.05 -52.48 -0.42 1.59 16 39 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 40 H 0.12 1.56 8.06 -52.48 -0.42 1.14 16 41 H 0.12 1.96 8.06 -52.48 -0.42 1.54 16 LS Contribution 362.74 15.07 5.47 5.47 Total: -1.00 -28.71 362.74 -8.22 -36.93 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -5.61 Total: 5.43 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: -1.60 Total: -4.77 kcal Atomic # 7 Polarization: -32.80 SS G_CDS: 0.36 Total: -32.44 kcal Atomic # 8 Polarization: -22.03 SS G_CDS: -0.31 Total: -22.34 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.03 Total: 14.54 kcal Atomic # 17 Polarization: -1.33 SS G_CDS: -1.50 Total: -2.83 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -28.71 -8.22 -36.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837235164.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.860 kcal (2) G-P(sol) polarization free energy of solvation -28.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds