Wall clock time and date at job start Tue Mar 31 2020 14:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42901 * 113.99996 * 2 1 4 4 C 1.53000 * 109.47038 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47024 * 65.00564 * 4 3 2 6 6 C 1.36709 * 120.00526 * 89.84196 * 5 4 3 7 7 H 1.08000 * 120.00365 * 218.05811 * 6 5 4 8 8 C 1.39125 * 119.99435 * 37.78276 * 6 5 4 9 9 N 1.31317 * 120.00487 * 20.63777 * 8 6 5 10 10 Si 1.86800 * 119.99719 * 200.64163 * 8 6 5 11 11 H 1.48501 * 109.47293 * 89.99980 * 10 8 6 12 12 H 1.48497 * 109.47080 * 209.99917 * 10 8 6 13 13 H 1.48500 * 109.47450 * 329.99707 * 10 8 6 14 14 C 1.34789 * 119.99615 * 269.84904 * 5 4 3 15 15 O 1.21759 * 119.99952 * 359.97438 * 14 5 4 16 16 C 1.46229 * 119.99715 * 180.02562 * 14 5 4 17 17 C 1.34973 * 119.99573 * 175.31232 * 16 14 5 18 18 C 1.50693 * 120.00410 * 3.30234 * 17 16 14 19 19 C 1.47150 * 119.99848 * 183.30320 * 17 16 14 20 20 C 1.39894 * 120.16905 * 294.72440 * 19 17 16 21 21 C 1.37861 * 119.85307 * 179.74097 * 20 19 17 22 22 C 1.38415 * 120.18374 * 0.55917 * 21 20 19 23 23 C 1.38501 * 120.34394 * 359.69191 * 22 21 20 24 24 Cl 1.73596 * 119.93127 * 180.02562 * 23 22 21 25 25 C 1.38022 * 120.14393 * 0.02649 * 23 22 21 26 26 H 1.09000 * 109.46519 * 59.99857 * 1 2 3 27 27 H 1.08996 * 109.47011 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.46943 * 299.99983 * 1 2 3 29 29 H 1.09007 * 109.47195 * 59.99996 * 3 2 1 30 30 H 1.09005 * 109.47105 * 300.00129 * 3 2 1 31 31 H 1.08997 * 109.47045 * 305.00445 * 4 3 2 32 32 H 1.08996 * 109.47023 * 185.00254 * 4 3 2 33 33 H 0.97000 * 120.00204 * 179.97438 * 9 8 6 34 34 H 1.07999 * 120.00165 * 355.30597 * 16 14 5 35 35 H 1.09001 * 109.47404 * 60.35159 * 18 17 16 36 36 H 1.09006 * 109.47291 * 180.35285 * 18 17 16 37 37 H 1.09000 * 109.47221 * 300.35683 * 18 17 16 38 38 H 1.08007 * 120.07314 * 0.02562 * 20 19 17 39 39 H 1.08005 * 119.91066 * 180.24964 * 21 20 19 40 40 H 1.08004 * 119.82824 * 179.72041 * 22 21 20 41 41 H 1.07994 * 120.09738 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5641 -1.2509 6 6 4.2645 1.3438 -2.3364 7 1 3.9964 1.0096 -3.3277 8 6 4.8975 2.5705 -2.1633 9 7 5.5740 2.8111 -1.0638 10 14 4.7850 3.8756 -3.4950 11 1 3.5985 4.7338 -3.2482 12 1 6.0127 4.7108 -3.4746 13 1 4.6545 3.2200 -4.8210 14 6 4.0988 -0.7758 -1.3323 15 8 3.8429 -1.4703 -0.3655 16 6 4.5398 -1.3952 -2.5814 17 6 4.7532 -2.7269 -2.6357 18 6 4.4659 -3.5858 -1.4312 19 6 5.2663 -3.3400 -3.8710 20 6 4.4916 -3.3289 -5.0358 21 6 4.9810 -3.9005 -6.1909 22 6 6.2310 -4.4949 -6.1977 23 6 7.0025 -4.5150 -5.0477 24 17 8.5690 -5.2628 -5.0685 25 6 6.5286 -3.9418 -3.8850 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.6887 1.8464 0.8900 30 1 1.6886 1.8464 -0.8900 31 1 3.8508 0.5684 0.8426 32 1 3.9785 2.1765 0.0903 33 1 6.0157 3.6662 -0.9433 34 1 4.6946 -0.7872 -3.4604 35 1 3.4110 -3.5035 -1.1695 36 1 4.7033 -4.6246 -1.6608 37 1 5.0756 -3.2506 -0.5922 38 1 3.5141 -2.8695 -5.0313 39 1 4.3853 -3.8889 -7.0918 40 1 6.6069 -4.9450 -7.1047 41 1 7.1310 -3.9575 -2.9888 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837235166.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:20 Heat of formation + Delta-G solvation = -41.163312 kcal Electronic energy + Delta-G solvation = -24847.660563 eV Core-core repulsion = 21140.231313 eV Total energy + Delta-G solvation = -3707.429250 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.37219 -38.57284 -36.99917 -36.49609 -35.08410 -33.89966 -31.62736 -30.78170 -29.94615 -29.23853 -26.90078 -25.72491 -24.80693 -23.51112 -22.46842 -21.85472 -19.71126 -18.66687 -17.01411 -16.27220 -16.14056 -15.61958 -15.34549 -15.28657 -15.18865 -14.53111 -14.39162 -13.95894 -13.82514 -13.62155 -13.43165 -13.24875 -12.64386 -12.26311 -12.23087 -11.84588 -11.62978 -11.51160 -11.40270 -11.36766 -11.28254 -11.10784 -11.04811 -10.93324 -10.79617 -10.47681 -10.27904 -10.18827 -9.15713 -9.01241 -8.98906 -8.74435 -8.23031 -8.14921 -7.44935 -6.41727 -4.08239 1.11264 1.25939 2.04092 2.26880 3.09257 3.18177 3.19721 3.65493 4.05213 4.43121 4.54644 4.66943 4.84705 4.94920 5.06066 5.18112 5.26638 5.41329 5.65417 5.69560 5.72610 5.79099 5.86172 5.97295 6.03158 6.11596 6.16377 6.22507 6.30045 6.33743 6.43813 6.45140 6.56801 6.79053 6.80319 6.87868 7.10339 7.18252 7.27813 7.41857 7.87711 7.94617 8.36515 9.06361 9.55964 10.02391 10.59619 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.011797 B = 0.003746 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2372.884455 B = 7472.600010 C = 8704.533947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.367 6.367 3 C 0.049 3.951 4 C 0.117 3.883 5 N -0.429 5.429 6 C -0.336 4.336 7 H 0.088 0.912 8 C 0.042 3.958 9 N -0.859 5.859 10 Si 0.912 3.088 11 H -0.277 1.277 12 H -0.283 1.283 13 H -0.268 1.268 14 C 0.500 3.500 15 O -0.582 6.582 16 C -0.134 4.134 17 C -0.074 4.074 18 C -0.089 4.089 19 C -0.016 4.016 20 C -0.104 4.104 21 C -0.107 4.107 22 C -0.121 4.121 23 C -0.032 4.032 24 Cl -0.078 7.078 25 C -0.099 4.099 26 H 0.031 0.969 27 H 0.075 0.925 28 H 0.030 0.970 29 H 0.038 0.962 30 H 0.047 0.953 31 H 0.065 0.935 32 H 0.117 0.883 33 H 0.270 0.730 34 H 0.124 0.876 35 H 0.079 0.921 36 H 0.036 0.964 37 H 0.079 0.921 38 H 0.131 0.869 39 H 0.131 0.869 40 H 0.129 0.871 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.181 -8.550 -6.868 11.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.285 6.285 3 C -0.028 4.028 4 C -0.007 4.007 5 N -0.147 5.147 6 C -0.464 4.464 7 H 0.106 0.894 8 C -0.164 4.164 9 N -0.495 5.495 10 Si 0.738 3.262 11 H -0.203 1.203 12 H -0.209 1.209 13 H -0.193 1.193 14 C 0.291 3.709 15 O -0.468 6.468 16 C -0.155 4.155 17 C -0.077 4.077 18 C -0.145 4.145 19 C -0.016 4.016 20 C -0.123 4.123 21 C -0.125 4.125 22 C -0.139 4.139 23 C -0.059 4.059 24 Cl -0.050 7.050 25 C -0.118 4.118 26 H 0.050 0.950 27 H 0.094 0.906 28 H 0.048 0.952 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.083 0.917 32 H 0.134 0.866 33 H 0.081 0.919 34 H 0.142 0.858 35 H 0.097 0.903 36 H 0.055 0.945 37 H 0.097 0.903 38 H 0.149 0.851 39 H 0.149 0.851 40 H 0.147 0.853 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -1.933 -8.918 -6.284 11.079 hybrid contribution -0.044 1.222 -0.844 1.486 sum -1.977 -7.695 -7.128 10.674 Atomic orbital electron populations 1.22620 0.83505 1.01602 0.98794 1.88167 1.17360 1.27917 1.95056 1.23109 0.96544 0.84390 0.98769 1.21465 0.89321 1.01880 0.88057 1.43121 1.56503 1.03851 1.11272 1.19389 1.38111 1.01069 0.87815 0.89406 1.25402 0.93952 0.99540 0.97483 1.69858 1.28232 1.24102 1.27343 0.86167 0.77851 0.80824 0.81315 1.20269 1.20891 1.19291 1.18150 0.81598 0.83252 0.87907 1.90663 1.54782 1.62240 1.39114 1.23084 0.99607 0.93665 0.99117 1.20775 0.99255 0.94206 0.93484 1.20736 1.03501 0.95352 0.94884 1.18972 0.92900 0.96120 0.93608 1.21531 1.00129 0.98803 0.91796 1.21011 0.95185 0.97947 0.98346 1.21047 0.94681 1.01229 0.96990 1.20780 0.87954 1.01261 0.95869 1.98357 1.26741 1.81041 1.98826 1.21214 0.95711 0.97630 0.97239 0.95019 0.90599 0.95192 0.94391 0.93516 0.91696 0.86599 0.91920 0.85819 0.90284 0.94528 0.90292 0.85074 0.85130 0.85309 0.84730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 101.05 1.11 1.62 16 2 O -0.37 -7.76 9.51 -42.53 -0.40 -8.16 16 3 C 0.05 1.01 6.28 37.16 0.23 1.25 16 4 C 0.12 2.75 5.45 -4.04 -0.02 2.73 16 5 N -0.43 -10.69 2.49 -116.47 -0.29 -10.98 16 6 C -0.34 -8.32 8.45 -15.05 -0.13 -8.44 16 7 H 0.09 2.10 6.74 -52.49 -0.35 1.75 16 8 C 0.04 1.04 4.97 -17.44 -0.09 0.95 16 9 N -0.86 -22.05 11.42 55.50 0.63 -21.42 16 10 Si 0.91 18.93 29.60 -169.99 -5.03 13.90 16 11 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 12 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16 13 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 14 C 0.50 12.18 7.16 -13.05 -0.09 12.09 16 15 O -0.58 -14.89 11.94 -2.16 -0.03 -14.91 16 16 C -0.13 -2.82 8.91 -37.53 -0.33 -3.15 16 17 C -0.07 -1.35 5.49 -102.17 -0.56 -1.92 16 18 C -0.09 -1.59 8.33 36.00 0.30 -1.29 16 19 C -0.02 -0.24 5.23 -105.06 -0.55 -0.79 16 20 C -0.10 -1.41 9.73 -39.10 -0.38 -1.79 16 21 C -0.11 -1.21 10.03 -39.65 -0.40 -1.61 16 22 C -0.12 -1.40 9.82 -39.42 -0.39 -1.78 16 23 C -0.03 -0.42 6.31 -39.56 -0.25 -0.67 16 24 Cl -0.08 -0.94 28.95 -51.86 -1.50 -2.44 16 25 C -0.10 -1.44 9.56 -39.06 -0.37 -1.82 16 26 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 28 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.06 1.60 7.41 -51.93 -0.39 1.22 16 32 H 0.12 2.83 5.50 -51.93 -0.29 2.55 16 33 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 34 H 0.12 2.56 6.48 -52.49 -0.34 2.22 16 35 H 0.08 1.52 7.34 -51.93 -0.38 1.14 16 36 H 0.04 0.55 7.99 -51.93 -0.41 0.14 16 37 H 0.08 1.56 7.15 -51.93 -0.37 1.18 16 38 H 0.13 1.66 8.06 -52.48 -0.42 1.24 16 39 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 40 H 0.13 1.20 8.06 -52.48 -0.42 0.78 16 41 H 0.13 1.92 8.06 -52.49 -0.42 1.49 16 LS Contribution 361.84 15.07 5.45 5.45 Total: -1.00 -28.43 361.84 -8.55 -36.99 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -5.47 Total: 6.19 kcal Atomic # 6 Polarization: -2.70 SS G_CDS: -1.92 Total: -4.62 kcal Atomic # 7 Polarization: -32.74 SS G_CDS: 0.34 Total: -32.40 kcal Atomic # 8 Polarization: -22.65 SS G_CDS: -0.43 Total: -23.08 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.03 Total: 13.90 kcal Atomic # 17 Polarization: -0.94 SS G_CDS: -1.50 Total: -2.44 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -28.43 -8.55 -36.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837235166.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.174 kcal (2) G-P(sol) polarization free energy of solvation -28.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds