Wall clock time and date at job start Tue Mar 31 2020 14:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42901 * 113.99996 * 2 1 4 4 C 1.53000 * 109.47038 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47024 * 65.00564 * 4 3 2 6 6 C 1.36709 * 120.00526 * 89.84196 * 5 4 3 7 7 H 1.08000 * 120.00365 * 218.05811 * 6 5 4 8 8 C 1.39125 * 119.99435 * 37.78276 * 6 5 4 9 9 N 1.31317 * 120.00487 * 20.63777 * 8 6 5 10 10 Si 1.86800 * 119.99719 * 200.64163 * 8 6 5 11 11 H 1.48501 * 109.47293 * 89.99980 * 10 8 6 12 12 H 1.48497 * 109.47080 * 209.99917 * 10 8 6 13 13 H 1.48500 * 109.47450 * 329.99707 * 10 8 6 14 14 C 1.34789 * 119.99615 * 269.84904 * 5 4 3 15 15 O 1.21759 * 119.99952 * 359.97438 * 14 5 4 16 16 C 1.46229 * 119.99715 * 180.02562 * 14 5 4 17 17 C 1.34973 * 119.99573 * 175.31232 * 16 14 5 18 18 C 1.50693 * 120.00410 * 3.30234 * 17 16 14 19 19 C 1.47150 * 119.99848 * 183.30320 * 17 16 14 20 20 C 1.39894 * 120.16905 * 294.72440 * 19 17 16 21 21 C 1.37861 * 119.85307 * 179.74097 * 20 19 17 22 22 C 1.38415 * 120.18374 * 0.55917 * 21 20 19 23 23 C 1.38501 * 120.34394 * 359.69191 * 22 21 20 24 24 Cl 1.73596 * 119.93127 * 180.02562 * 23 22 21 25 25 C 1.38022 * 120.14393 * 0.02649 * 23 22 21 26 26 H 1.09000 * 109.46519 * 59.99857 * 1 2 3 27 27 H 1.08996 * 109.47011 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.46943 * 299.99983 * 1 2 3 29 29 H 1.09007 * 109.47195 * 59.99996 * 3 2 1 30 30 H 1.09005 * 109.47105 * 300.00129 * 3 2 1 31 31 H 1.08997 * 109.47045 * 305.00445 * 4 3 2 32 32 H 1.08996 * 109.47023 * 185.00254 * 4 3 2 33 33 H 0.97000 * 120.00204 * 179.97438 * 9 8 6 34 34 H 1.07999 * 120.00165 * 355.30597 * 16 14 5 35 35 H 1.09001 * 109.47404 * 60.35159 * 18 17 16 36 36 H 1.09006 * 109.47291 * 180.35285 * 18 17 16 37 37 H 1.09000 * 109.47221 * 300.35683 * 18 17 16 38 38 H 1.08007 * 120.07314 * 0.02562 * 20 19 17 39 39 H 1.08005 * 119.91066 * 180.24964 * 21 20 19 40 40 H 1.08004 * 119.82824 * 179.72041 * 22 21 20 41 41 H 1.07994 * 120.09738 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5641 -1.2509 6 6 4.2645 1.3438 -2.3364 7 1 3.9964 1.0096 -3.3277 8 6 4.8975 2.5705 -2.1633 9 7 5.5740 2.8111 -1.0638 10 14 4.7850 3.8756 -3.4950 11 1 3.5985 4.7338 -3.2482 12 1 6.0127 4.7108 -3.4746 13 1 4.6545 3.2200 -4.8210 14 6 4.0988 -0.7758 -1.3323 15 8 3.8429 -1.4703 -0.3655 16 6 4.5398 -1.3952 -2.5814 17 6 4.7532 -2.7269 -2.6357 18 6 4.4659 -3.5858 -1.4312 19 6 5.2663 -3.3400 -3.8710 20 6 4.4916 -3.3289 -5.0358 21 6 4.9810 -3.9005 -6.1909 22 6 6.2310 -4.4949 -6.1977 23 6 7.0025 -4.5150 -5.0477 24 17 8.5690 -5.2628 -5.0685 25 6 6.5286 -3.9418 -3.8850 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.6887 1.8464 0.8900 30 1 1.6886 1.8464 -0.8900 31 1 3.8508 0.5684 0.8426 32 1 3.9785 2.1765 0.0903 33 1 6.0157 3.6662 -0.9433 34 1 4.6946 -0.7872 -3.4604 35 1 3.4110 -3.5035 -1.1695 36 1 4.7033 -4.6246 -1.6608 37 1 5.0756 -3.2506 -0.5922 38 1 3.5141 -2.8695 -5.0313 39 1 4.3853 -3.8889 -7.0918 40 1 6.6069 -4.9450 -7.1047 41 1 7.1310 -3.9575 -2.9888 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837235166.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:20 Heat of formation + Delta-G solvation = -54.766150 kcal Electronic energy + Delta-G solvation = -24848.250426 eV Core-core repulsion = 21140.231313 eV Total energy + Delta-G solvation = -3708.019113 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.73263 -40.08811 -38.56245 -37.52539 -36.79878 -35.41680 -33.50817 -31.82918 -31.39628 -30.64069 -28.46842 -27.18498 -26.62136 -24.82960 -23.50676 -23.38095 -21.35335 -20.28798 -18.46289 -17.97152 -17.51453 -17.18800 -16.97584 -16.43391 -16.36140 -16.11602 -16.00682 -15.59498 -15.15634 -14.95094 -14.66279 -14.55144 -14.20685 -13.82203 -13.59680 -13.35951 -13.26429 -13.15538 -12.73006 -12.62981 -12.61681 -12.55585 -12.43624 -12.32255 -12.13984 -11.95895 -11.89312 -11.81768 -11.00200 -10.51581 -10.27903 -10.04568 -9.81237 -9.55130 -9.29685 -8.27720 -6.01299 -0.00731 0.23281 0.67458 1.14422 1.45853 1.48716 1.58767 2.31580 2.59854 2.64384 3.00728 3.07717 3.24446 3.69566 3.89716 4.11669 4.15311 4.27567 4.29258 4.38755 4.41909 4.48251 4.57202 4.59570 4.65847 4.71071 4.74875 4.80373 4.91946 4.94144 5.02400 5.18657 5.24380 5.28772 5.32406 5.41801 5.48709 5.60857 5.71832 5.84177 6.07890 6.39059 6.50303 7.17340 7.69145 8.15983 8.74503 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.011797 B = 0.003746 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2372.884455 B = 7472.600010 C = 8704.533947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.401 6.401 3 C 0.060 3.940 4 C 0.117 3.883 5 N -0.443 5.443 6 C -0.349 4.349 7 H 0.092 0.908 8 C 0.004 3.996 9 N -0.893 5.893 10 Si 0.979 3.021 11 H -0.270 1.270 12 H -0.285 1.285 13 H -0.260 1.260 14 C 0.488 3.512 15 O -0.607 6.607 16 C -0.172 4.172 17 C -0.036 4.036 18 C -0.084 4.084 19 C -0.045 4.045 20 C -0.107 4.107 21 C -0.096 4.096 22 C -0.110 4.110 23 C -0.040 4.040 24 Cl -0.070 7.070 25 C -0.109 4.109 26 H 0.042 0.958 27 H 0.088 0.912 28 H 0.051 0.949 29 H 0.065 0.935 30 H 0.045 0.955 31 H 0.040 0.960 32 H 0.105 0.895 33 H 0.273 0.727 34 H 0.123 0.877 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.058 0.942 38 H 0.136 0.864 39 H 0.168 0.832 40 H 0.158 0.842 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.764 -9.269 -9.626 13.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.320 6.320 3 C -0.017 4.017 4 C -0.007 4.007 5 N -0.161 5.161 6 C -0.477 4.477 7 H 0.109 0.891 8 C -0.199 4.199 9 N -0.530 5.530 10 Si 0.803 3.197 11 H -0.196 1.196 12 H -0.211 1.211 13 H -0.184 1.184 14 C 0.281 3.719 15 O -0.495 6.495 16 C -0.192 4.192 17 C -0.038 4.038 18 C -0.140 4.140 19 C -0.045 4.045 20 C -0.125 4.125 21 C -0.114 4.114 22 C -0.128 4.128 23 C -0.067 4.067 24 Cl -0.042 7.042 25 C -0.128 4.128 26 H 0.060 0.940 27 H 0.107 0.893 28 H 0.070 0.930 29 H 0.083 0.917 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.122 0.878 33 H 0.082 0.918 34 H 0.141 0.859 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.076 0.924 38 H 0.154 0.846 39 H 0.185 0.815 40 H 0.176 0.824 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -2.528 -9.641 -9.047 13.461 hybrid contribution 0.166 1.261 0.001 1.272 sum -2.361 -8.381 -9.046 12.555 Atomic orbital electron populations 1.22850 0.80754 1.03026 1.00337 1.88109 1.20441 1.28129 1.95348 1.22903 0.94316 0.84635 0.99847 1.21386 0.91763 1.00440 0.87118 1.43331 1.56938 1.04222 1.11585 1.19629 1.38506 1.01537 0.88016 0.89073 1.26199 0.93173 1.01025 0.99523 1.69963 1.29134 1.24670 1.29252 0.85138 0.77668 0.77993 0.78903 1.19571 1.21087 1.18383 1.18723 0.81101 0.83254 0.88855 1.90625 1.55963 1.62652 1.40224 1.22845 1.03710 0.94762 0.97919 1.21011 0.95174 0.93200 0.94455 1.20658 1.02109 0.97034 0.94244 1.18849 0.94155 0.98271 0.93225 1.21674 1.00261 0.98853 0.91753 1.21387 0.95219 0.96169 0.98637 1.21457 0.94245 0.99794 0.97298 1.20884 0.88591 1.01281 0.95913 1.98362 1.26186 1.80804 1.98802 1.21166 0.95446 0.98187 0.97961 0.93987 0.89333 0.93000 0.91744 0.93719 0.94108 0.87785 0.91755 0.85878 0.91685 0.91547 0.92369 0.84567 0.81494 0.82401 0.85357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.82 11.01 113.37 1.25 2.06 16 2 O -0.40 -17.15 9.51 -142.01 -1.35 -18.50 16 3 C 0.06 2.51 6.28 71.98 0.45 2.96 16 4 C 0.12 5.76 5.45 86.38 0.47 6.23 16 5 N -0.44 -22.94 2.49 -640.57 -1.60 -24.53 16 6 C -0.35 -17.71 8.45 84.15 0.71 -17.00 16 7 H 0.09 4.45 6.74 -2.91 -0.02 4.43 16 8 C 0.00 0.19 4.97 84.98 0.42 0.61 16 9 N -0.89 -47.03 11.42 21.69 0.25 -46.78 16 10 Si 0.98 38.74 29.60 68.60 2.03 40.78 16 11 H -0.27 -10.36 7.11 99.48 0.71 -9.65 16 12 H -0.29 -11.29 7.11 99.48 0.71 -10.58 16 13 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 14 C 0.49 24.91 7.16 86.32 0.62 25.53 16 15 O -0.61 -32.64 11.94 2.44 0.03 -32.61 16 16 C -0.17 -7.47 8.91 23.60 0.21 -7.26 16 17 C -0.04 -1.32 5.49 -18.28 -0.10 -1.42 16 18 C -0.08 -3.09 8.33 71.23 0.59 -2.49 16 19 C -0.04 -1.35 5.23 -20.15 -0.11 -1.45 16 20 C -0.11 -2.67 9.73 22.58 0.22 -2.45 16 21 C -0.10 -1.82 10.03 22.22 0.22 -1.59 16 22 C -0.11 -2.12 9.82 22.37 0.22 -1.90 16 23 C -0.04 -0.96 6.31 22.28 0.14 -0.82 16 24 Cl -0.07 -1.55 28.95 -2.72 -0.08 -1.63 16 25 C -0.11 -3.06 9.56 22.61 0.22 -2.84 16 26 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 28 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 30 H 0.04 1.85 8.14 -2.38 -0.02 1.83 16 31 H 0.04 2.14 7.41 -2.39 -0.02 2.12 16 32 H 0.10 5.32 5.50 -2.39 -0.01 5.31 16 33 H 0.27 13.48 8.31 -92.71 -0.77 12.71 16 34 H 0.12 5.26 6.48 -2.91 -0.02 5.24 16 35 H 0.06 2.59 7.34 -2.39 -0.02 2.57 16 36 H 0.07 1.99 7.99 -2.38 -0.02 1.98 16 37 H 0.06 2.40 7.15 -2.39 -0.02 2.38 16 38 H 0.14 3.21 8.06 -2.91 -0.02 3.18 16 39 H 0.17 1.97 8.06 -2.91 -0.02 1.94 16 40 H 0.16 2.16 8.06 -2.91 -0.02 2.14 16 41 H 0.13 3.65 8.06 -2.91 -0.02 3.63 16 Total: -1.00 -63.69 361.84 5.86 -57.83 By element: Atomic # 1 Polarization: 26.23 SS G_CDS: 1.04 Total: 27.27 kcal Atomic # 6 Polarization: -7.36 SS G_CDS: 5.54 Total: -1.82 kcal Atomic # 7 Polarization: -69.97 SS G_CDS: -1.35 Total: -71.32 kcal Atomic # 8 Polarization: -49.79 SS G_CDS: -1.32 Total: -51.11 kcal Atomic # 14 Polarization: 38.74 SS G_CDS: 2.03 Total: 40.78 kcal Atomic # 17 Polarization: -1.55 SS G_CDS: -0.08 Total: -1.63 kcal Total: -63.69 5.86 -57.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837235166.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.064 kcal (2) G-P(sol) polarization free energy of solvation -63.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds