Wall clock time and date at job start Tue Mar 31 2020 14:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 113.99835 * 2 1 4 4 C 1.52991 * 109.46970 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47575 * 65.98447 * 4 3 2 6 6 C 1.36723 * 120.00195 * 266.70655 * 5 4 3 7 7 H 1.07998 * 119.99890 * 141.77319 * 6 5 4 8 8 C 1.39117 * 119.99677 * 321.76766 * 6 5 4 9 9 N 1.31327 * 119.99691 * 158.13459 * 8 6 5 10 10 Si 1.86798 * 120.00220 * 338.13320 * 8 6 5 11 11 H 1.48503 * 109.46944 * 95.36158 * 10 8 6 12 12 H 1.48506 * 109.46885 * 215.35957 * 10 8 6 13 13 H 1.48491 * 109.47203 * 335.35985 * 10 8 6 14 14 C 1.34778 * 120.00016 * 86.70571 * 5 4 3 15 15 O 1.21764 * 119.99756 * 359.97438 * 14 5 4 16 16 C 1.46187 * 120.00460 * 180.02562 * 14 5 4 17 17 C 1.35020 * 120.00339 * 180.02562 * 16 14 5 18 18 C 1.50696 * 119.99811 * 179.97438 * 17 16 14 19 19 C 1.47080 * 119.99858 * 359.97438 * 17 16 14 20 20 C 1.39913 * 120.17899 * 105.00097 * 19 17 16 21 21 C 1.37830 * 119.83487 * 179.72497 * 20 19 17 22 22 C 1.38462 * 120.21070 * 0.28092 * 21 20 19 23 23 C 1.38339 * 120.37141 * 359.97438 * 22 21 20 24 24 C 1.38054 * 120.16038 * 359.95546 * 23 22 21 25 25 Cl 1.73599 * 120.10762 * 179.97438 * 24 23 22 26 26 H 1.09008 * 109.47095 * 60.00464 * 1 2 3 27 27 H 1.08998 * 109.47211 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47482 * 300.00407 * 1 2 3 29 29 H 1.08995 * 109.47611 * 59.99475 * 3 2 1 30 30 H 1.09004 * 109.46445 * 299.99305 * 3 2 1 31 31 H 1.09008 * 109.47308 * 305.98291 * 4 3 2 32 32 H 1.09000 * 109.47422 * 185.99050 * 4 3 2 33 33 H 0.97000 * 120.00329 * 180.02562 * 9 8 6 34 34 H 1.08004 * 119.99221 * 359.97438 * 16 14 5 35 35 H 1.08995 * 109.47785 * 269.99823 * 18 17 16 36 36 H 1.09005 * 109.47510 * 30.00247 * 18 17 16 37 37 H 1.09011 * 109.46901 * 149.99599 * 18 17 16 38 38 H 1.08004 * 120.08458 * 0.02562 * 20 19 17 39 39 H 1.08002 * 119.89338 * 180.25642 * 21 20 19 40 40 H 1.08001 * 119.81703 * 179.97438 * 22 21 20 41 41 H 1.08002 * 119.91708 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9774 0.5860 -1.2625 6 6 4.1633 -0.7657 -1.3498 7 1 3.8833 -1.2923 -2.2502 8 6 4.7131 -1.4627 -0.2787 9 7 4.5096 -2.7549 -0.1623 10 14 5.7410 -0.5608 0.9938 11 1 4.8837 -0.1855 2.1468 12 1 6.8389 -1.4452 1.4605 13 1 6.3174 0.6652 0.3858 14 6 4.2008 1.3677 -2.3375 15 8 4.0348 2.5715 -2.2599 16 6 4.6413 0.7703 -3.5969 17 6 4.8656 1.5535 -4.6736 18 6 5.3203 0.9376 -5.9717 19 6 4.6662 3.0077 -4.5796 20 6 5.7690 3.8656 -4.5068 21 6 5.5740 5.2276 -4.4246 22 6 4.2910 5.7479 -4.4080 23 6 3.1943 4.9073 -4.4743 24 6 3.3719 3.5408 -4.5584 25 17 1.9948 2.4871 -4.6408 26 1 -0.3634 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.6886 1.8465 0.8899 30 1 1.6886 1.8463 -0.8901 31 1 3.8503 0.5539 0.8307 32 1 3.9784 2.1748 0.1066 33 1 4.8926 -3.2409 0.5846 34 1 4.7881 -0.2975 -3.6657 35 1 6.4095 0.9048 -5.9965 36 1 4.9244 -0.0748 -6.0519 37 1 4.9557 1.5374 -6.8057 38 1 6.7707 3.4620 -4.5198 39 1 6.4247 5.8910 -4.3725 40 1 4.1455 6.8161 -4.3430 41 1 2.1968 5.3211 -4.4604 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837235242.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:22 Heat of formation + Delta-G solvation = -41.210882 kcal Electronic energy + Delta-G solvation = -25986.647029 eV Core-core repulsion = 22279.215716 eV Total energy + Delta-G solvation = -3707.431313 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.96839 -39.87624 -38.57703 -37.20921 -36.72913 -35.66670 -33.90571 -31.64573 -31.46248 -30.58988 -28.66930 -27.25953 -26.52737 -24.58327 -23.70765 -23.35322 -21.35336 -20.16483 -18.80965 -18.25716 -17.47836 -17.39954 -17.05975 -16.39396 -16.33433 -16.13508 -15.99988 -15.33129 -15.22953 -14.79171 -14.65391 -14.52168 -14.36264 -13.90891 -13.71061 -13.57853 -13.35278 -13.19036 -13.09425 -13.00175 -12.57338 -12.44513 -12.35640 -12.27813 -12.15953 -11.92826 -11.71652 -11.57187 -11.05070 -10.63198 -10.44636 -9.96846 -9.71726 -9.54569 -9.10878 -8.42731 -5.96851 0.21248 0.47667 0.65122 1.21394 1.32217 1.39059 1.41669 2.22526 2.52113 2.71530 2.84387 2.91575 3.22564 3.71156 3.98122 4.07081 4.14759 4.20908 4.24933 4.35488 4.46067 4.50699 4.51652 4.56439 4.57692 4.64493 4.72025 4.78190 4.80267 4.82852 4.90096 5.05294 5.10655 5.32531 5.45752 5.48454 5.54862 5.63862 5.68040 6.05534 6.13709 6.31238 6.38642 7.06818 7.54772 7.90659 8.72223 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.013367 B = 0.005399 C = 0.004816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.246319 B = 5185.305776 C = 5812.354967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.397 6.397 3 C 0.064 3.936 4 C 0.097 3.903 5 N -0.461 5.461 6 C -0.318 4.318 7 H 0.073 0.927 8 C 0.034 3.966 9 N -0.895 5.895 10 Si 0.922 3.078 11 H -0.265 1.265 12 H -0.284 1.284 13 H -0.267 1.267 14 C 0.503 3.497 15 O -0.593 6.593 16 C -0.180 4.180 17 C -0.036 4.036 18 C -0.107 4.107 19 C -0.024 4.024 20 C -0.112 4.112 21 C -0.117 4.117 22 C -0.115 4.115 23 C -0.125 4.125 24 C -0.009 4.009 25 Cl -0.090 7.090 26 H 0.037 0.963 27 H 0.087 0.913 28 H 0.056 0.944 29 H 0.073 0.927 30 H 0.039 0.961 31 H 0.064 0.936 32 H 0.088 0.912 33 H 0.276 0.724 34 H 0.125 0.875 35 H 0.094 0.906 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.135 0.865 39 H 0.153 0.847 40 H 0.155 0.845 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.664 13.394 -7.674 15.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.316 6.316 3 C -0.014 4.014 4 C -0.026 4.026 5 N -0.180 5.180 6 C -0.446 4.446 7 H 0.091 0.909 8 C -0.170 4.170 9 N -0.532 5.532 10 Si 0.748 3.252 11 H -0.191 1.191 12 H -0.211 1.211 13 H -0.191 1.191 14 C 0.296 3.704 15 O -0.479 6.479 16 C -0.200 4.200 17 C -0.039 4.039 18 C -0.163 4.163 19 C -0.024 4.024 20 C -0.130 4.130 21 C -0.135 4.135 22 C -0.133 4.133 23 C -0.144 4.144 24 C -0.036 4.036 25 Cl -0.061 7.061 26 H 0.056 0.944 27 H 0.106 0.894 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.058 0.942 31 H 0.082 0.918 32 H 0.106 0.894 33 H 0.085 0.915 34 H 0.143 0.857 35 H 0.112 0.888 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.153 0.847 39 H 0.171 0.829 40 H 0.173 0.827 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -0.750 13.509 -7.500 15.469 hybrid contribution -0.155 -0.438 1.022 1.123 sum -0.905 13.071 -6.477 14.616 Atomic orbital electron populations 1.22840 0.80620 1.03080 1.00241 1.88140 1.20505 1.27681 1.95314 1.22761 0.93555 0.84887 1.00180 1.21777 0.93896 0.98781 0.88153 1.43533 1.58313 1.06740 1.09455 1.18652 1.41159 0.81052 1.03764 0.90943 1.25781 0.96812 0.95550 0.98888 1.69812 1.42112 1.09476 1.31817 0.86216 0.79455 0.79295 0.80205 1.19079 1.21078 1.19134 1.18593 0.80140 0.85906 0.85752 1.90691 1.57614 1.14395 1.85240 1.22937 1.04015 1.00356 0.92716 1.21252 0.95216 0.91590 0.95810 1.20871 1.02602 1.00886 0.91990 1.18717 0.92133 0.92820 0.98774 1.21316 0.97556 0.93742 1.00410 1.21361 0.98222 0.94714 0.99162 1.21385 0.91564 1.00669 0.99667 1.21082 1.00862 0.90785 1.01622 1.21007 0.87052 0.91316 1.04192 1.98333 1.43588 1.67507 1.96683 0.94438 0.89436 0.92503 0.90909 0.94242 0.91792 0.89394 0.91461 0.85702 0.88761 0.90655 0.90221 0.84688 0.82924 0.82699 0.84630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.93 11.01 113.37 1.25 2.18 16 2 O -0.40 -17.58 10.37 -148.98 -1.55 -19.13 16 3 C 0.06 2.59 6.26 71.98 0.45 3.04 16 4 C 0.10 4.39 4.46 86.38 0.39 4.78 16 5 N -0.46 -22.83 2.13 -640.63 -1.36 -24.19 16 6 C -0.32 -17.33 8.57 84.14 0.72 -16.60 16 7 H 0.07 4.27 6.95 -2.91 -0.02 4.25 16 8 C 0.03 1.84 5.29 84.98 0.45 2.29 16 9 N -0.89 -51.44 13.95 21.69 0.30 -51.13 16 10 Si 0.92 43.26 25.05 68.60 1.72 44.98 16 11 H -0.26 -11.84 6.68 99.48 0.66 -11.18 16 12 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 13 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 14 C 0.50 23.53 7.16 86.31 0.62 24.15 16 15 O -0.59 -27.70 12.23 -4.55 -0.06 -27.75 16 16 C -0.18 -7.48 8.64 23.59 0.20 -7.27 16 17 C -0.04 -1.23 4.63 -18.28 -0.08 -1.31 16 18 C -0.11 -2.69 10.04 71.23 0.72 -1.97 16 19 C -0.02 -0.79 3.35 -20.13 -0.07 -0.86 16 20 C -0.11 -3.20 9.80 22.58 0.22 -2.98 16 21 C -0.12 -2.78 10.03 22.23 0.22 -2.55 16 22 C -0.11 -2.71 10.04 22.35 0.22 -2.48 16 23 C -0.12 -3.56 9.82 22.25 0.22 -3.34 16 24 C -0.01 -0.31 4.59 22.65 0.10 -0.20 16 25 Cl -0.09 -3.17 27.22 -2.72 -0.07 -3.25 16 26 H 0.04 1.16 8.14 -2.38 -0.02 1.14 16 27 H 0.09 2.68 8.14 -2.39 -0.02 2.67 16 28 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.07 2.43 8.14 -2.39 -0.02 2.42 16 30 H 0.04 1.67 8.14 -2.38 -0.02 1.65 16 31 H 0.06 3.01 3.49 -2.38 -0.01 3.00 16 32 H 0.09 3.78 7.52 -2.39 -0.02 3.76 16 33 H 0.28 14.81 8.31 -92.71 -0.77 14.04 16 34 H 0.13 5.38 6.52 -2.91 -0.02 5.36 16 35 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.07 1.85 8.08 -2.38 -0.02 1.83 16 37 H 0.08 1.75 8.11 -2.38 -0.02 1.73 16 38 H 0.14 3.40 8.06 -2.91 -0.02 3.37 16 39 H 0.15 2.57 8.06 -2.91 -0.02 2.54 16 40 H 0.16 2.53 8.06 -2.91 -0.02 2.51 16 41 H 0.14 3.37 8.06 -2.91 -0.02 3.35 16 Total: -1.00 -67.45 355.57 5.60 -61.84 By element: Atomic # 1 Polarization: 20.78 SS G_CDS: 0.99 Total: 21.77 kcal Atomic # 6 Polarization: -8.77 SS G_CDS: 5.63 Total: -3.14 kcal Atomic # 7 Polarization: -74.26 SS G_CDS: -1.06 Total: -75.32 kcal Atomic # 8 Polarization: -45.28 SS G_CDS: -1.60 Total: -46.88 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 1.72 Total: 44.98 kcal Atomic # 17 Polarization: -3.17 SS G_CDS: -0.07 Total: -3.25 kcal Total: -67.45 5.60 -61.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837235242.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.630 kcal (2) G-P(sol) polarization free energy of solvation -67.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds