Wall clock time and date at job start Tue Mar 31 2020 13:51:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47275 * 2 1 4 4 C 1.50698 * 109.47226 * 239.99863 * 2 1 3 5 5 H 1.07998 * 119.99940 * 241.35144 * 4 2 1 6 6 C 1.37879 * 120.00043 * 61.34674 * 4 2 1 7 7 N 1.31513 * 120.00199 * 193.97713 * 6 4 2 8 8 Si 1.86803 * 119.99948 * 13.98186 * 6 4 2 9 9 H 1.48495 * 109.47267 * 84.54223 * 8 6 4 10 10 H 1.48494 * 109.46853 * 204.54620 * 8 6 4 11 11 H 1.48501 * 109.46756 * 324.54555 * 8 6 4 12 12 C 1.52997 * 109.47004 * 120.00020 * 2 1 3 13 13 N 1.46506 * 109.47142 * 299.99879 * 12 2 1 14 14 C 1.39029 * 120.00163 * 179.97438 * 13 12 2 15 15 C 1.38884 * 120.17091 * 0.02562 * 14 13 12 16 16 C 1.38021 * 120.07053 * 179.97438 * 15 14 13 17 17 C 1.38567 * 120.41793 * 359.97438 * 16 15 14 18 18 S 1.76208 * 119.82238 * 179.97438 * 17 16 15 19 19 N 1.65597 * 107.21578 * 90.00344 * 18 17 16 20 20 O 1.42104 * 106.39895 * 203.54195 * 18 17 16 21 21 O 1.42094 * 106.40236 * 336.46199 * 18 17 16 22 22 C 1.37792 * 120.35261 * 0.02562 * 17 16 15 23 23 C 1.39736 * 119.91483 * 359.97438 * 22 17 16 24 24 C 1.43198 * 120.20271 * 180.27548 * 23 22 17 25 25 N 5.39005 * 72.98023 * 64.13898 * 2 1 3 26 26 H 1.08999 * 109.46954 * 309.37408 * 1 2 3 27 27 H 1.09009 * 109.46812 * 69.36688 * 1 2 3 28 28 H 1.08996 * 109.47107 * 189.36570 * 1 2 3 29 29 H 1.09003 * 109.47361 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.47297 * 299.99944 * 3 2 1 31 31 H 1.09003 * 109.47475 * 59.99847 * 3 2 1 32 32 H 0.96998 * 119.99887 * 180.02562 * 7 6 4 33 33 H 1.08998 * 109.47742 * 179.97438 * 12 2 1 34 34 H 1.09002 * 109.47269 * 59.99206 * 12 2 1 35 35 H 0.97004 * 120.00005 * 0.02562 * 13 12 2 36 36 H 1.08004 * 119.96674 * 359.97438 * 15 14 13 37 37 H 1.07994 * 119.78633 * 180.02562 * 16 15 14 38 38 H 0.96999 * 120.00765 * 359.97438 * 19 18 17 39 39 H 0.97006 * 120.00069 * 179.97438 * 19 18 17 40 40 H 1.08000 * 120.04713 * 180.02562 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6351 -1.6011 -1.1314 6 6 1.7224 -0.2234 -2.4825 7 7 1.9158 -0.9726 -3.5460 8 14 1.0277 1.5006 -2.6685 9 1 2.1418 2.4816 -2.7083 10 1 0.2472 1.5865 -3.9288 11 1 0.1419 1.8043 -1.5159 12 6 2.0400 -0.7212 1.2492 13 7 1.5516 -0.0306 2.4454 14 6 1.8870 -0.5059 3.7082 15 6 2.6852 -1.6348 3.8398 16 6 3.0174 -2.1045 5.0944 17 6 2.5595 -1.4561 6.2302 18 16 2.9926 -2.0697 7.8242 19 7 4.4052 -1.3281 8.2677 20 8 1.9943 -1.5999 8.7197 21 8 3.2984 -3.4469 7.6544 22 6 1.7666 -0.3346 6.1198 23 6 1.4216 0.1533 4.8566 24 6 0.6027 1.3217 4.7347 25 7 -0.0477 2.2481 4.6378 26 1 -0.3633 0.6519 0.7944 27 1 -0.3633 0.3622 -0.9618 28 1 -0.3633 -1.0139 0.1672 29 1 3.1301 1.4425 0.0005 30 1 1.6768 1.9563 -0.8899 31 1 1.6767 1.9564 0.8900 32 1 1.6981 -0.6298 -4.4268 33 1 3.1300 -0.7217 1.2491 34 1 1.6765 -1.7489 1.2493 35 1 0.9937 0.7579 2.3564 36 1 3.0465 -2.1457 2.9595 37 1 3.6387 -2.9825 5.1914 38 1 4.8252 -0.6884 7.6717 39 1 4.8129 -1.5335 9.1236 40 1 1.4128 0.1672 7.0083 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840333699.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:46 Heat of formation + Delta-G solvation = -8.192628 kcal Electronic energy + Delta-G solvation = -24668.133504 eV Core-core repulsion = 20996.470428 eV Total energy + Delta-G solvation = -3671.663076 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.109 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.12266 -37.54525 -37.26222 -36.49287 -35.94475 -34.60339 -33.39492 -31.97238 -31.60678 -29.64978 -26.60340 -26.23033 -25.00567 -24.23741 -22.35595 -20.37728 -19.42344 -19.09453 -17.79510 -17.59407 -17.12560 -16.47027 -16.19782 -15.89292 -15.39852 -15.28443 -14.80577 -14.30402 -14.19360 -13.91924 -13.48071 -13.27972 -13.11682 -12.93914 -12.75696 -12.70191 -12.35620 -12.31300 -12.22442 -12.21769 -12.10860 -11.88706 -11.62494 -11.03174 -10.71738 -10.66122 -10.63707 -10.44643 -10.28711 -10.14883 -9.33731 -9.32017 -8.87102 -8.64128 -7.88811 -6.31806 -4.31000 0.27162 0.64141 0.84759 2.53884 2.65746 3.02754 3.12328 3.20320 3.23885 3.28263 3.42436 3.67379 3.74258 4.20816 4.41545 4.53045 4.73676 4.98628 5.10772 5.19361 5.43846 5.50199 5.59785 5.69481 5.74080 5.79516 5.81349 5.91545 6.05811 6.15924 6.27850 6.34440 6.41438 6.48299 6.65003 6.76065 6.94375 7.00136 7.18240 7.36398 7.43447 7.54750 8.23749 8.70433 9.31712 10.80713 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.023977 B = 0.002984 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.513769 B = 9380.909412 C =10161.137248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.031 3.969 3 C -0.150 4.150 4 C -0.519 4.519 5 H 0.079 0.921 6 C 0.080 3.920 7 N -0.886 5.886 8 Si 0.882 3.118 9 H -0.284 1.284 10 H -0.303 1.303 11 H -0.251 1.251 12 C 0.129 3.871 13 N -0.706 5.706 14 C 0.321 3.679 15 C -0.214 4.214 16 C 0.052 3.948 17 C -0.749 4.749 18 S 2.709 3.291 19 N -1.253 6.253 20 O -0.971 6.971 21 O -0.968 6.968 22 C 0.083 3.917 23 C -0.144 4.144 24 C 0.257 3.743 25 N -0.423 5.423 26 H 0.019 0.981 27 H 0.059 0.941 28 H 0.049 0.951 29 H 0.056 0.944 30 H 0.045 0.955 31 H 0.026 0.974 32 H 0.267 0.733 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.404 0.596 36 H 0.147 0.853 37 H 0.146 0.854 38 H 0.417 0.583 39 H 0.417 0.583 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.523 -0.271 19.999 20.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.029 3.971 3 C -0.207 4.207 4 C -0.557 4.557 5 H 0.097 0.903 6 C -0.124 4.124 7 N -0.522 5.522 8 Si 0.715 3.285 9 H -0.212 1.212 10 H -0.231 1.231 11 H -0.177 1.177 12 C 0.007 3.993 13 N -0.324 5.324 14 C 0.202 3.798 15 C -0.238 4.238 16 C 0.030 3.970 17 C -0.841 4.841 18 S 2.800 3.200 19 N -0.927 5.927 20 O -0.960 6.960 21 O -0.957 6.957 22 C 0.061 3.939 23 C -0.154 4.154 24 C -0.057 4.057 25 N -0.099 5.099 26 H 0.038 0.962 27 H 0.078 0.922 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.063 0.937 31 H 0.045 0.955 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.241 0.759 36 H 0.165 0.835 37 H 0.164 0.836 38 H 0.244 0.756 39 H 0.247 0.753 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 3.909 0.325 19.800 20.185 hybrid contribution 0.100 1.611 -0.958 1.877 sum 4.010 1.936 18.842 19.361 Atomic orbital electron populations 1.22329 0.97702 0.99952 1.00270 1.18700 0.92643 0.92305 0.93408 1.22387 1.01268 0.98249 0.98816 1.20618 1.34736 1.12505 0.87813 0.90342 1.24938 0.94448 0.97213 0.95797 1.69927 1.47524 1.35878 0.98843 0.87332 0.79467 0.85482 0.76244 1.21187 1.23117 1.17667 1.21921 0.98908 0.96282 0.82204 1.45755 1.51978 1.31253 1.03413 1.18145 0.87256 0.89853 0.84537 1.20813 1.05380 0.98592 0.98971 1.20803 0.90942 0.94832 0.90410 1.29896 1.20973 1.12499 1.20717 1.01167 0.72584 0.73217 0.73074 1.53138 1.46014 1.62118 1.31445 1.93592 1.58042 1.81493 1.62921 1.93593 1.84069 1.31939 1.86119 1.20605 0.87341 0.89996 0.96005 1.15466 1.09641 0.96748 0.93525 1.25464 0.93060 0.92733 0.94491 1.81284 1.10785 1.11485 1.06365 0.96174 0.92198 0.93159 0.92539 0.93715 0.95458 0.92319 0.91045 0.90939 0.75887 0.83531 0.83583 0.75611 0.75299 0.83583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.82 7.53 37.16 0.28 -2.54 16 2 C 0.03 0.60 0.50 -155.66 -0.08 0.53 16 3 C -0.15 -2.88 7.52 37.16 0.28 -2.60 16 4 C -0.52 -12.72 8.62 -34.44 -0.30 -13.02 16 5 H 0.08 2.07 7.99 -52.49 -0.42 1.65 16 6 C 0.08 2.09 5.32 -17.82 -0.09 2.00 16 7 N -0.89 -25.14 13.96 55.43 0.77 -24.37 16 8 Si 0.88 20.35 22.79 -169.99 -3.87 16.47 16 9 H -0.28 -6.55 7.10 56.52 0.40 -6.14 16 10 H -0.30 -7.20 7.11 56.52 0.40 -6.79 16 11 H -0.25 -5.36 4.65 56.52 0.26 -5.10 16 12 C 0.13 2.03 3.72 -4.04 -0.02 2.01 16 13 N -0.71 -9.72 5.09 -58.42 -0.30 -10.02 16 14 C 0.32 3.84 6.66 -83.56 -0.56 3.29 16 15 C -0.21 -2.21 9.29 -39.42 -0.37 -2.58 16 16 C 0.05 0.46 9.50 -39.54 -0.38 0.08 16 17 C -0.75 -6.59 5.94 -39.62 -0.24 -6.83 16 18 S 2.71 22.59 6.28 -107.50 -0.67 21.91 16 19 N -1.25 -5.63 9.55 60.35 0.58 -5.06 16 20 O -0.97 -11.23 17.26 -57.17 -0.99 -12.22 16 21 O -0.97 -11.04 17.26 -57.17 -0.99 -12.03 16 22 C 0.08 0.80 9.22 -39.19 -0.36 0.44 16 23 C -0.14 -1.65 5.76 -106.61 -0.61 -2.27 16 24 C 0.26 3.43 14.09 -22.47 -0.32 3.12 16 25 N -0.42 -6.49 18.54 41.84 0.78 -5.72 16 26 H 0.02 0.34 7.13 -51.93 -0.37 -0.03 16 27 H 0.06 1.26 4.30 -51.92 -0.22 1.04 16 28 H 0.05 0.94 8.12 -51.93 -0.42 0.52 16 29 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.04 0.93 2.25 -51.93 -0.12 0.81 16 31 H 0.03 0.45 6.86 -51.93 -0.36 0.10 16 32 H 0.27 7.18 8.31 -40.82 -0.34 6.85 16 33 H 0.07 1.07 7.94 -51.93 -0.41 0.66 16 34 H 0.07 1.12 7.94 -51.93 -0.41 0.71 16 35 H 0.40 5.86 5.12 -40.82 -0.21 5.65 16 36 H 0.15 1.42 6.72 -52.48 -0.35 1.07 16 37 H 0.15 1.03 7.60 -52.49 -0.40 0.63 16 38 H 0.42 1.02 8.92 -34.48 -0.31 0.71 16 39 H 0.42 1.25 8.96 -34.47 -0.31 0.94 16 40 H 0.15 1.19 7.60 -52.49 -0.40 0.79 16 LS Contribution 337.15 15.07 5.08 5.08 Total: -1.00 -32.86 337.15 -6.77 -39.63 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -4.40 Total: 4.69 kcal Atomic # 6 Polarization: -15.62 SS G_CDS: -2.75 Total: -18.37 kcal Atomic # 7 Polarization: -46.99 SS G_CDS: 1.83 Total: -45.17 kcal Atomic # 8 Polarization: -22.27 SS G_CDS: -1.97 Total: -24.25 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -3.87 Total: 16.47 kcal Atomic # 16 Polarization: 22.59 SS G_CDS: -0.67 Total: 21.91 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.86 -6.77 -39.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840333699.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.436 kcal (2) G-P(sol) polarization free energy of solvation -32.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds