Wall clock time and date at job start Tue Mar 31 2020 13:52:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47273 * 2 1 4 4 C 1.50709 * 109.47122 * 240.00296 * 2 1 3 5 5 H 1.07997 * 119.99684 * 238.75003 * 4 2 1 6 6 C 1.37878 * 119.99955 * 58.75243 * 4 2 1 7 7 N 1.31507 * 119.99774 * 195.43099 * 6 4 2 8 8 Si 1.86803 * 119.99958 * 15.42616 * 6 4 2 9 9 H 1.48506 * 109.46998 * 84.35468 * 8 6 4 10 10 H 1.48498 * 109.47159 * 204.35241 * 8 6 4 11 11 H 1.48503 * 109.47328 * 324.35598 * 8 6 4 12 12 C 1.52994 * 109.47402 * 120.00239 * 2 1 3 13 13 N 1.46499 * 109.47412 * 300.00115 * 12 2 1 14 14 C 1.34776 * 120.00295 * 179.97438 * 13 12 2 15 15 S 1.71200 * 119.99885 * 0.02562 * 14 13 12 16 16 N 1.34774 * 120.00037 * 179.97438 * 14 13 12 17 17 C 1.39883 * 120.00239 * 185.10532 * 16 14 13 18 18 C 1.38883 * 120.06984 * 41.09566 * 17 16 14 19 19 C 1.38113 * 119.92960 * 180.02562 * 18 17 16 20 20 C 1.38295 * 120.06825 * 0.02562 * 19 18 17 21 21 N 1.48020 * 119.92594 * 179.97438 * 20 19 18 22 22 O 1.21800 * 120.00100 * 359.97438 * 21 20 19 23 23 O 1.21793 * 119.99844 * 179.72264 * 21 20 19 24 24 C 1.38281 * 120.14407 * 0.25495 * 20 19 18 25 25 C 1.38117 * 120.07041 * 359.48966 * 24 20 19 26 26 H 1.08996 * 109.46707 * 307.15780 * 1 2 3 27 27 H 1.09000 * 109.47253 * 67.15683 * 1 2 3 28 28 H 1.09004 * 109.46882 * 187.15709 * 1 2 3 29 29 H 1.08995 * 109.46835 * 180.02562 * 3 2 1 30 30 H 1.08996 * 109.46859 * 300.00032 * 3 2 1 31 31 H 1.08996 * 109.46489 * 60.00370 * 3 2 1 32 32 H 0.97006 * 119.99746 * 179.97438 * 7 6 4 33 33 H 1.09004 * 109.47485 * 179.97438 * 12 2 1 34 34 H 1.09003 * 109.46927 * 60.00127 * 12 2 1 35 35 H 0.97001 * 119.99709 * 359.97438 * 13 12 2 36 36 H 0.97012 * 119.99977 * 5.11183 * 16 14 13 37 37 H 1.07993 * 120.03416 * 0.02562 * 18 17 16 38 38 H 1.07995 * 119.96592 * 179.97438 * 19 18 17 39 39 H 1.08000 * 119.96390 * 179.74466 * 24 20 19 40 40 H 1.07995 * 120.03530 * 180.25700 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6698 -1.5765 -1.1316 6 6 1.6782 -0.2545 -2.4827 7 7 1.8504 -1.0235 -3.5354 8 14 0.9535 1.4556 -2.6835 9 1 2.0518 2.4512 -2.7728 10 1 0.1384 1.5052 -3.9238 11 1 0.0945 1.7698 -1.5136 12 6 2.0400 -0.7213 1.2491 13 7 1.5517 -0.0308 2.4454 14 6 1.8770 -0.4916 3.6695 15 16 2.8613 -1.8835 3.8264 16 7 1.4282 0.1440 4.7699 17 6 1.8515 -0.2689 6.0376 18 6 3.1784 -0.6211 6.2477 19 6 3.5931 -1.0288 7.5004 20 6 2.6885 -1.0871 8.5449 21 7 3.1363 -1.5250 9.8860 22 8 4.3001 -1.8341 10.0687 23 8 2.3418 -1.5719 10.8080 24 6 1.3654 -0.7426 8.3376 25 6 0.9455 -0.3290 7.0885 26 1 -0.3632 0.6207 0.8190 27 1 -0.3634 0.3989 -0.9471 28 1 -0.3633 -1.0197 0.1280 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9562 0.8900 32 1 1.6008 -0.7028 -4.4163 33 1 3.1301 -0.7217 1.2489 34 1 1.6767 -1.7490 1.2491 35 1 0.9943 0.7581 2.3564 36 1 0.8114 0.8877 4.6829 37 1 3.8851 -0.5762 5.4324 38 1 4.6247 -1.3033 7.6643 39 1 0.6606 -0.7931 9.1544 40 1 -0.0871 -0.0561 6.9283 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840846071.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:30 Heat of formation + Delta-G solvation = 63.217969 kcal Electronic energy + Delta-G solvation = -24128.021523 eV Core-core repulsion = 20459.455043 eV Total energy + Delta-G solvation = -3668.566480 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.109 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.32072 -40.64312 -38.89869 -36.99797 -36.70025 -34.47447 -31.97494 -31.79422 -30.87542 -27.11952 -26.68283 -25.89124 -25.24638 -24.36175 -23.10509 -22.44666 -19.89076 -19.57579 -19.11195 -18.65782 -18.17776 -17.65830 -16.46213 -16.16916 -15.86411 -15.36302 -15.16265 -14.93652 -14.75393 -14.19020 -13.82248 -13.70283 -13.21267 -13.06900 -12.93773 -12.47899 -12.34300 -12.07207 -11.75593 -11.61461 -11.36132 -11.28271 -11.27224 -10.76565 -10.60335 -10.52214 -10.31757 -10.11288 -9.77691 -9.42387 -9.01361 -8.95208 -8.64772 -7.92817 -7.27240 -6.33329 -4.31931 -0.44882 0.67234 0.89585 1.24225 1.37293 1.73844 2.26896 2.98991 3.04618 3.12289 3.22705 3.28578 4.05516 4.16489 4.19702 4.44772 4.53032 4.81422 4.95009 5.08392 5.27963 5.33870 5.45743 5.55764 5.66540 5.72316 5.76243 5.91130 6.00425 6.01198 6.16477 6.25287 6.26501 6.35954 6.39682 6.53865 6.68381 6.90766 7.07221 7.11676 7.48019 7.49268 8.23146 8.73008 9.28956 10.79314 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.037915 B = 0.002429 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.321641 B =11524.372494 C =11869.868076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.030 3.970 3 C -0.150 4.150 4 C -0.518 4.518 5 H 0.081 0.919 6 C 0.080 3.920 7 N -0.882 5.882 8 Si 0.878 3.122 9 H -0.284 1.284 10 H -0.301 1.301 11 H -0.249 1.249 12 C 0.138 3.862 13 N -0.649 5.649 14 C 0.544 3.456 15 S -0.612 6.612 16 N -0.650 5.650 17 C 0.202 3.798 18 C -0.077 4.077 19 C -0.045 4.045 20 C -0.052 4.052 21 N 0.033 4.967 22 O -0.162 6.162 23 O -0.169 6.169 24 C -0.046 4.046 25 C -0.133 4.133 26 H 0.016 0.984 27 H 0.063 0.937 28 H 0.052 0.948 29 H 0.057 0.943 30 H 0.046 0.954 31 H 0.023 0.977 32 H 0.267 0.733 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.398 0.602 36 H 0.410 0.590 37 H 0.169 0.831 38 H 0.157 0.843 39 H 0.155 0.845 40 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.748 7.291 19.340 21.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.028 3.972 3 C -0.207 4.207 4 C -0.556 4.556 5 H 0.099 0.901 6 C -0.124 4.124 7 N -0.518 5.518 8 Si 0.710 3.290 9 H -0.211 1.211 10 H -0.230 1.230 11 H -0.175 1.175 12 C 0.017 3.983 13 N -0.273 5.273 14 C 0.186 3.814 15 S -0.482 6.482 16 N -0.278 5.278 17 C 0.106 3.894 18 C -0.100 4.100 19 C -0.066 4.066 20 C -0.136 4.136 21 N 0.550 4.450 22 O -0.378 6.378 23 O -0.383 6.383 24 C -0.066 4.066 25 C -0.155 4.155 26 H 0.035 0.965 27 H 0.082 0.918 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.064 0.936 31 H 0.042 0.958 32 H 0.077 0.923 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.236 0.764 36 H 0.249 0.751 37 H 0.186 0.814 38 H 0.175 0.825 39 H 0.173 0.827 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -3.272 6.431 18.299 19.670 hybrid contribution -1.445 2.233 -0.253 2.671 sum -4.717 8.664 18.046 20.566 Atomic orbital electron populations 1.22432 0.97788 1.00272 1.00200 1.18792 0.92545 0.92295 0.93543 1.22399 1.01568 0.98189 0.98590 1.20589 1.32800 1.14639 0.87555 0.90062 1.24942 0.94603 0.97020 0.95844 1.69944 1.46908 1.35482 0.99419 0.87455 0.79408 0.85645 0.76519 1.21113 1.22971 1.17477 1.22256 1.00411 0.96618 0.78999 1.45816 1.47650 1.29203 1.04592 1.22460 0.86748 0.90609 0.81625 1.93564 1.45097 1.16900 1.92615 1.42230 1.47800 1.34833 1.02973 1.17712 0.92864 0.95775 0.83029 1.21553 0.95295 0.96670 0.96497 1.20871 1.00622 0.95305 0.89843 1.21147 0.96352 1.12654 0.83409 1.43613 1.00562 0.97853 1.02924 1.94546 1.02435 1.51180 1.89648 1.94520 1.50879 1.57788 1.35144 1.20698 0.93304 0.94512 0.98082 1.20856 0.99720 1.03547 0.91412 0.96457 0.91819 0.92930 0.92360 0.93558 0.95844 0.92291 0.89212 0.89170 0.76400 0.75079 0.81353 0.82528 0.82694 0.83478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 7.56 37.16 0.28 -2.36 16 2 C 0.03 0.56 0.50 -155.66 -0.08 0.48 16 3 C -0.15 -2.61 7.61 37.16 0.28 -2.33 16 4 C -0.52 -12.68 8.62 -34.44 -0.30 -12.98 16 5 H 0.08 2.22 7.99 -52.49 -0.42 1.80 16 6 C 0.08 2.06 5.31 -17.82 -0.09 1.97 16 7 N -0.88 -24.91 13.96 55.43 0.77 -24.13 16 8 Si 0.88 19.28 22.83 -169.99 -3.88 15.40 16 9 H -0.28 -6.25 7.10 56.52 0.40 -5.85 16 10 H -0.30 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.25 -4.84 4.58 56.52 0.26 -4.58 16 12 C 0.14 2.28 3.95 -4.05 -0.02 2.26 16 13 N -0.65 -7.91 5.00 -62.03 -0.31 -8.22 16 14 C 0.54 6.59 7.76 -86.92 -0.67 5.91 16 15 S -0.61 -10.05 24.96 -107.50 -2.68 -12.73 16 16 N -0.65 -5.29 5.33 -11.40 -0.06 -5.35 16 17 C 0.20 1.76 5.94 -83.71 -0.50 1.26 16 18 C -0.08 -0.77 7.85 -39.39 -0.31 -1.08 16 19 C -0.04 -0.44 9.55 -39.61 -0.38 -0.81 16 20 C -0.05 -0.52 6.85 -79.91 -0.55 -1.07 16 21 N 0.03 0.40 4.45 33.98 0.15 0.55 16 22 O -0.16 -2.14 18.44 -29.46 -0.54 -2.69 16 23 O -0.17 -2.14 18.44 -29.46 -0.54 -2.68 16 24 C -0.05 -0.36 9.55 -39.61 -0.38 -0.74 16 25 C -0.13 -0.91 9.97 -39.39 -0.39 -1.30 16 26 H 0.02 0.24 7.07 -51.93 -0.37 -0.13 16 27 H 0.06 1.23 3.99 -51.93 -0.21 1.03 16 28 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.05 0.88 2.49 -51.93 -0.13 0.75 16 31 H 0.02 0.31 6.86 -51.93 -0.36 -0.04 16 32 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 33 H 0.09 1.60 7.99 -51.93 -0.42 1.18 16 34 H 0.09 1.65 7.99 -51.93 -0.41 1.24 16 35 H 0.40 3.89 6.25 -40.82 -0.25 3.64 16 36 H 0.41 1.90 8.84 -40.81 -0.36 1.54 16 37 H 0.17 1.90 6.16 -47.12 -0.29 1.61 16 38 H 0.16 1.38 7.60 -52.49 -0.40 0.98 16 39 H 0.16 0.97 7.60 -52.49 -0.40 0.57 16 40 H 0.15 0.59 8.06 -52.49 -0.42 0.17 16 LS Contribution 336.71 15.07 5.07 5.07 Total: -1.00 -30.60 336.71 -9.68 -40.28 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -4.56 Total: 5.29 kcal Atomic # 6 Polarization: -7.69 SS G_CDS: -3.10 Total: -10.79 kcal Atomic # 7 Polarization: -37.71 SS G_CDS: 0.55 Total: -37.16 kcal Atomic # 8 Polarization: -4.28 SS G_CDS: -1.09 Total: -5.37 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -3.88 Total: 15.40 kcal Atomic # 16 Polarization: -10.05 SS G_CDS: -2.68 Total: -12.73 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.60 -9.68 -40.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840846071.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.497 kcal (2) G-P(sol) polarization free energy of solvation -30.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds