Wall clock time and date at job start Tue Mar 31 2020 13:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.47165 * 2 1 4 4 C 1.52999 * 109.47196 * 119.99595 * 2 1 3 5 5 N 1.46900 * 109.47090 * 178.03706 * 4 2 1 6 6 C 1.46907 * 110.99900 * 156.41141 * 5 4 2 7 7 C 1.50696 * 109.46719 * 288.13111 * 6 5 4 8 8 H 1.08002 * 120.00507 * 4.95598 * 7 6 5 9 9 C 1.37884 * 119.99984 * 184.95748 * 7 6 5 10 10 N 1.31515 * 120.00414 * 180.02562 * 9 7 6 11 11 Si 1.86798 * 119.99503 * 359.97438 * 9 7 6 12 12 H 1.48498 * 109.47353 * 90.00143 * 11 9 7 13 13 H 1.48507 * 109.46912 * 209.99882 * 11 9 7 14 14 H 1.48500 * 109.47270 * 329.99749 * 11 9 7 15 15 C 1.46897 * 111.00299 * 280.36558 * 5 4 2 16 16 C 1.50696 * 109.47149 * 77.70829 * 15 5 4 17 17 N 1.29417 * 125.69656 * 69.69469 * 16 15 5 18 18 N 1.26398 * 116.47818 * 179.97438 * 17 16 15 19 19 C 1.29415 * 116.47511 * 359.97438 * 18 17 16 20 20 C 1.50692 * 125.69402 * 179.73180 * 19 18 17 21 21 F 1.39900 * 109.47579 * 5.02758 * 20 19 18 22 22 F 1.39897 * 109.47064 * 125.02859 * 20 19 18 23 23 F 1.39903 * 109.47121 * 245.02510 * 20 19 18 24 24 S 1.71215 * 125.69980 * 249.66767 * 16 15 5 25 25 H 1.09000 * 109.46997 * 300.00122 * 1 2 3 26 26 H 1.08996 * 109.47186 * 60.00121 * 1 2 3 27 27 H 1.08992 * 109.47325 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46997 * 239.99878 * 2 1 3 29 29 H 1.08995 * 109.46967 * 184.95722 * 3 2 1 30 30 H 1.09000 * 109.46827 * 304.95675 * 3 2 1 31 31 H 1.09001 * 109.47157 * 64.95359 * 3 2 1 32 32 H 1.08997 * 109.46853 * 58.04192 * 4 2 1 33 33 H 1.08994 * 109.47594 * 298.04185 * 4 2 1 34 34 H 1.08997 * 109.46635 * 48.12821 * 6 5 4 35 35 H 1.08998 * 109.47076 * 168.13358 * 6 5 4 36 36 H 0.96994 * 120.00177 * 180.02562 * 10 9 7 37 37 H 1.09004 * 109.47195 * 317.70900 * 15 5 4 38 38 H 1.09005 * 109.47248 * 197.71029 * 15 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5082 -0.7624 1.2258 6 6 4.0524 -0.9149 2.5818 7 6 3.8677 0.3716 3.3446 8 1 3.3231 1.1906 2.8985 9 6 4.3942 0.5030 4.6122 10 7 4.2327 1.6255 5.2783 11 14 5.3355 -0.9138 5.3841 12 1 6.7759 -0.7954 5.0428 13 1 5.1713 -0.8718 6.8594 14 1 4.8077 -2.2006 4.8637 15 6 3.9908 -1.8315 0.3416 16 6 3.8780 -1.3858 -1.0935 17 7 4.5955 -0.4685 -1.6580 18 7 4.3533 -0.2336 -2.8761 19 6 3.4150 -0.9367 -3.4238 20 6 2.9536 -0.8251 -4.8540 21 9 3.7725 0.0788 -5.5392 22 9 3.0289 -2.0801 -5.4676 23 9 1.6308 -0.3705 -4.8832 24 16 2.7796 -2.0088 -2.2498 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 3.1263 1.4438 -0.0888 30 1 1.6059 1.9813 -0.8423 31 1 1.7509 1.9302 0.9310 32 1 1.6482 -1.7381 1.2670 33 1 1.7057 -0.1875 2.1389 34 1 3.5275 -1.7204 3.0953 35 1 5.1144 -1.1529 2.5225 36 1 4.6033 1.7181 6.1698 37 1 3.3883 -2.7273 0.4923 38 1 5.0331 -2.0516 0.5728 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000851778521.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:55 Heat of formation + Delta-G solvation = -73.983275 kcal Electronic energy + Delta-G solvation = -25966.530297 eV Core-core repulsion = 21750.157584 eV Total energy + Delta-G solvation = -4216.372713 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.097 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.56630 -48.11948 -48.01829 -41.67690 -38.01341 -34.39668 -33.14850 -32.19252 -29.78287 -27.71924 -26.77246 -26.38789 -25.12508 -23.66118 -21.19035 -20.56939 -20.11391 -19.75899 -18.98487 -18.39799 -18.05817 -16.88342 -16.14423 -15.23145 -15.15080 -14.88857 -14.83044 -14.51669 -14.47451 -14.30861 -14.18299 -14.16466 -13.86044 -13.68341 -13.33236 -13.19998 -12.68962 -12.48683 -12.07073 -11.90770 -11.69126 -11.33095 -11.05110 -10.90154 -10.81624 -10.78329 -10.58446 -10.46106 -10.26737 -10.17167 -10.00661 -9.47034 -9.25717 -8.63991 -7.71556 -6.11524 -4.09810 -0.14528 0.31857 0.86306 1.99859 2.20309 3.05272 3.22753 3.29070 3.31181 3.69094 3.85992 4.01713 4.34158 4.39537 4.64819 4.93409 5.11744 5.20288 5.24080 5.33962 5.49194 5.53389 5.72707 5.91279 5.95861 6.21620 6.25994 6.30725 6.44941 6.59074 6.72381 6.73982 6.96276 7.40332 7.64316 7.75821 8.18792 8.53372 8.98453 9.48497 11.01372 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.022136 B = 0.003672 C = 0.003491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.596097 B = 7624.111409 C = 8019.490207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.101 4.101 3 C -0.134 4.134 4 C 0.059 3.941 5 N -0.511 5.511 6 C 0.167 3.833 7 C -0.509 4.509 8 H 0.084 0.916 9 C 0.071 3.929 10 N -0.896 5.896 11 Si 0.873 3.127 12 H -0.275 1.275 13 H -0.286 1.286 14 H -0.269 1.269 15 C 0.119 3.881 16 C 0.045 3.955 17 N -0.228 5.228 18 N -0.187 5.187 19 C -0.162 4.162 20 C 0.565 3.435 21 F -0.151 7.151 22 F -0.164 7.164 23 F -0.161 7.161 24 S 0.246 5.754 25 H 0.059 0.941 26 H 0.051 0.949 27 H 0.049 0.951 28 H 0.047 0.953 29 H 0.070 0.930 30 H 0.033 0.967 31 H 0.059 0.941 32 H 0.026 0.974 33 H 0.097 0.903 34 H -0.007 1.007 35 H 0.029 0.971 36 H 0.264 0.736 37 H 0.060 0.940 38 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.132 -10.323 -17.502 21.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.121 4.121 3 C -0.192 4.192 4 C -0.069 4.069 5 N -0.235 5.235 6 C 0.041 3.959 7 C -0.547 4.547 8 H 0.102 0.898 9 C -0.131 4.131 10 N -0.535 5.535 11 Si 0.700 3.300 12 H -0.201 1.201 13 H -0.212 1.212 14 H -0.194 1.194 15 C -0.014 4.014 16 C -0.232 4.232 17 N -0.067 5.067 18 N -0.029 5.029 19 C -0.441 4.441 20 C 0.507 3.493 21 F -0.132 7.132 22 F -0.145 7.145 23 F -0.142 7.142 24 S 0.490 5.510 25 H 0.078 0.922 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.089 0.911 30 H 0.053 0.947 31 H 0.078 0.922 32 H 0.044 0.956 33 H 0.116 0.884 34 H 0.011 0.989 35 H 0.047 0.953 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -5.675 -9.553 -17.539 20.762 hybrid contribution 0.292 -1.222 0.580 1.384 sum -5.383 -10.775 -16.959 20.801 Atomic orbital electron populations 1.21800 0.95452 1.01142 1.01858 1.21443 0.94940 0.97998 0.97678 1.21665 1.02532 0.94320 1.00655 1.22331 0.87137 0.98105 0.99306 1.61801 1.08112 1.41378 1.12201 1.20257 0.94530 0.97967 0.83110 1.20946 1.35782 0.98987 0.99015 0.89821 1.24869 0.95857 0.95444 0.96924 1.69877 1.45753 1.25132 1.12714 0.86911 0.80973 0.83271 0.78826 1.20076 1.21188 1.19363 1.20854 1.03615 0.93438 0.83467 1.29977 0.93893 0.95275 1.04047 1.71614 1.22518 1.13115 0.99466 1.71563 1.10085 1.18291 1.02939 1.28925 1.06130 1.06891 1.02115 1.16570 0.75478 0.74621 0.82657 1.93280 1.72165 1.67262 1.80534 1.93263 1.96045 1.41065 1.84156 1.93282 1.35351 1.88974 1.96630 1.83695 1.33798 1.34117 0.99365 0.92211 0.93007 0.93184 0.93511 0.91129 0.94746 0.92216 0.95592 0.88446 0.98887 0.95334 0.92557 0.92167 0.87041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.19 37.16 0.34 -1.48 16 2 C -0.10 -1.51 2.68 -90.62 -0.24 -1.75 16 3 C -0.13 -2.32 8.99 37.16 0.33 -1.98 16 4 C 0.06 0.99 4.24 -3.82 -0.02 0.97 16 5 N -0.51 -9.41 3.76 -237.52 -0.89 -10.30 16 6 C 0.17 3.62 3.77 -4.97 -0.02 3.61 16 7 C -0.51 -13.51 8.94 -34.44 -0.31 -13.81 16 8 H 0.08 2.45 7.83 -52.49 -0.41 2.04 16 9 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 10 N -0.90 -26.52 13.96 55.43 0.77 -25.74 16 11 Si 0.87 20.34 27.37 -169.99 -4.65 15.68 16 12 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 13 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 14 H -0.27 -5.90 6.69 56.52 0.38 -5.52 16 15 C 0.12 1.73 5.62 -4.98 -0.03 1.70 16 16 C 0.05 0.64 5.14 -13.30 -0.07 0.57 16 17 N -0.23 -3.80 11.66 32.58 0.38 -3.42 16 18 N -0.19 -2.95 11.41 32.57 0.37 -2.58 16 19 C -0.16 -2.10 6.83 -13.30 -0.09 -2.19 16 20 C 0.57 6.41 3.55 36.00 0.13 6.53 16 21 F -0.15 -1.85 17.13 2.25 0.04 -1.81 16 22 F -0.16 -1.66 17.30 2.25 0.04 -1.62 16 23 F -0.16 -1.76 17.30 2.25 0.04 -1.72 16 24 S 0.25 2.72 20.79 -107.50 -2.24 0.48 16 25 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.05 0.66 3.35 -36.99 -0.12 0.54 16 29 H 0.07 1.40 7.81 -51.93 -0.41 0.99 16 30 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 32 H 0.03 0.38 7.63 -51.93 -0.40 -0.02 16 33 H 0.10 1.89 6.95 -51.93 -0.36 1.53 16 34 H -0.01 -0.14 7.45 -51.93 -0.39 -0.53 16 35 H 0.03 0.62 6.82 -51.93 -0.35 0.27 16 36 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 37 H 0.06 0.71 7.64 -51.93 -0.40 0.31 16 38 H 0.11 1.56 7.61 -51.93 -0.40 1.17 16 LS Contribution 338.13 15.07 5.10 5.10 Total: -1.00 -29.33 338.13 -5.62 -34.94 By element: Atomic # 1 Polarization: 1.47 SS G_CDS: -4.50 Total: -3.04 kcal Atomic # 6 Polarization: -5.90 SS G_CDS: -0.07 Total: -5.96 kcal Atomic # 7 Polarization: -42.68 SS G_CDS: 0.63 Total: -42.05 kcal Atomic # 9 Polarization: -5.27 SS G_CDS: 0.12 Total: -5.15 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -4.65 Total: 15.68 kcal Atomic # 16 Polarization: 2.72 SS G_CDS: -2.24 Total: 0.48 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.33 -5.62 -34.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851778521.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.040 kcal (2) G-P(sol) polarization free energy of solvation -29.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds