Wall clock time and date at job start Tue Mar 31 2020 13:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.47165 * 2 1 4 4 C 1.52999 * 109.47196 * 119.99595 * 2 1 3 5 5 N 1.46900 * 109.47090 * 178.03706 * 4 2 1 6 6 C 1.46907 * 110.99900 * 156.41141 * 5 4 2 7 7 C 1.50696 * 109.46719 * 288.13111 * 6 5 4 8 8 H 1.08002 * 120.00507 * 4.95598 * 7 6 5 9 9 C 1.37884 * 119.99984 * 184.95748 * 7 6 5 10 10 N 1.31515 * 120.00414 * 180.02562 * 9 7 6 11 11 Si 1.86798 * 119.99503 * 359.97438 * 9 7 6 12 12 H 1.48498 * 109.47353 * 90.00143 * 11 9 7 13 13 H 1.48507 * 109.46912 * 209.99882 * 11 9 7 14 14 H 1.48500 * 109.47270 * 329.99749 * 11 9 7 15 15 C 1.46897 * 111.00299 * 280.36558 * 5 4 2 16 16 C 1.50696 * 109.47149 * 77.70829 * 15 5 4 17 17 N 1.29417 * 125.69656 * 69.69469 * 16 15 5 18 18 N 1.26398 * 116.47818 * 179.97438 * 17 16 15 19 19 C 1.29415 * 116.47511 * 359.97438 * 18 17 16 20 20 C 1.50692 * 125.69402 * 179.73180 * 19 18 17 21 21 F 1.39900 * 109.47579 * 5.02758 * 20 19 18 22 22 F 1.39897 * 109.47064 * 125.02859 * 20 19 18 23 23 F 1.39903 * 109.47121 * 245.02510 * 20 19 18 24 24 S 1.71215 * 125.69980 * 249.66767 * 16 15 5 25 25 H 1.09000 * 109.46997 * 300.00122 * 1 2 3 26 26 H 1.08996 * 109.47186 * 60.00121 * 1 2 3 27 27 H 1.08992 * 109.47325 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46997 * 239.99878 * 2 1 3 29 29 H 1.08995 * 109.46967 * 184.95722 * 3 2 1 30 30 H 1.09000 * 109.46827 * 304.95675 * 3 2 1 31 31 H 1.09001 * 109.47157 * 64.95359 * 3 2 1 32 32 H 1.08997 * 109.46853 * 58.04192 * 4 2 1 33 33 H 1.08994 * 109.47594 * 298.04185 * 4 2 1 34 34 H 1.08997 * 109.46635 * 48.12821 * 6 5 4 35 35 H 1.08998 * 109.47076 * 168.13358 * 6 5 4 36 36 H 0.96994 * 120.00177 * 180.02562 * 10 9 7 37 37 H 1.09004 * 109.47195 * 317.70900 * 15 5 4 38 38 H 1.09005 * 109.47248 * 197.71029 * 15 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5082 -0.7624 1.2258 6 6 4.0524 -0.9149 2.5818 7 6 3.8677 0.3716 3.3446 8 1 3.3231 1.1906 2.8985 9 6 4.3942 0.5030 4.6122 10 7 4.2327 1.6255 5.2783 11 14 5.3355 -0.9138 5.3841 12 1 6.7759 -0.7954 5.0428 13 1 5.1713 -0.8718 6.8594 14 1 4.8077 -2.2006 4.8637 15 6 3.9908 -1.8315 0.3416 16 6 3.8780 -1.3858 -1.0935 17 7 4.5955 -0.4685 -1.6580 18 7 4.3533 -0.2336 -2.8761 19 6 3.4150 -0.9367 -3.4238 20 6 2.9536 -0.8251 -4.8540 21 9 3.7725 0.0788 -5.5392 22 9 3.0289 -2.0801 -5.4676 23 9 1.6308 -0.3705 -4.8832 24 16 2.7796 -2.0088 -2.2498 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 3.1263 1.4438 -0.0888 30 1 1.6059 1.9813 -0.8423 31 1 1.7509 1.9302 0.9310 32 1 1.6482 -1.7381 1.2670 33 1 1.7057 -0.1875 2.1389 34 1 3.5275 -1.7204 3.0953 35 1 5.1144 -1.1529 2.5225 36 1 4.6033 1.7181 6.1698 37 1 3.3883 -2.7273 0.4923 38 1 5.0331 -2.0516 0.5728 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000851778521.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:55 Heat of formation + Delta-G solvation = -93.429038 kcal Electronic energy + Delta-G solvation = -25967.373529 eV Core-core repulsion = 21750.157584 eV Total energy + Delta-G solvation = -4217.215945 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.097 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -51.45419 -48.97847 -48.93185 -42.76854 -39.35992 -35.72978 -34.77159 -33.69009 -31.06696 -29.29805 -27.99293 -27.56512 -26.34022 -25.02299 -22.68910 -21.75606 -21.21662 -20.93907 -19.87304 -19.34884 -19.18945 -18.72434 -17.35545 -16.66109 -16.41148 -15.96893 -15.82323 -15.71405 -15.69184 -15.34971 -15.27517 -15.06886 -15.05720 -14.91027 -14.51661 -14.44404 -14.18249 -13.84354 -13.56439 -13.22996 -12.99897 -12.75711 -12.57709 -12.44181 -12.13179 -12.01122 -11.86020 -11.75944 -11.61323 -11.50761 -11.42703 -11.34375 -10.73087 -10.38085 -9.10502 -8.22526 -6.25438 -1.15892 -0.64946 -0.15706 1.05090 1.11342 1.39698 1.40864 1.50345 2.12906 2.38741 2.76961 2.93581 2.97236 3.07248 3.17236 3.63285 3.84089 3.86488 4.04870 4.22547 4.27426 4.43799 4.51664 4.72838 4.74413 4.81238 4.97007 5.00658 5.05754 5.11373 5.24918 5.43248 5.49305 5.57546 5.95601 6.29138 6.60133 6.82441 7.14194 7.37100 8.94352 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.022136 B = 0.003672 C = 0.003491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.596097 B = 7624.111409 C = 8019.490207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.095 4.095 3 C -0.127 4.127 4 C 0.062 3.938 5 N -0.535 5.535 6 C 0.176 3.824 7 C -0.508 4.508 8 H 0.036 0.964 9 C 0.006 3.994 10 N -0.952 5.952 11 Si 0.946 3.054 12 H -0.271 1.271 13 H -0.289 1.289 14 H -0.239 1.239 15 C 0.117 3.883 16 C 0.021 3.979 17 N -0.264 5.264 18 N -0.220 5.220 19 C -0.172 4.172 20 C 0.571 3.429 21 F -0.158 7.158 22 F -0.153 7.153 23 F -0.156 7.156 24 S 0.344 5.656 25 H 0.049 0.951 26 H 0.064 0.936 27 H 0.076 0.924 28 H 0.060 0.940 29 H 0.039 0.961 30 H 0.047 0.953 31 H 0.033 0.967 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.006 0.994 35 H 0.034 0.966 36 H 0.264 0.736 37 H 0.099 0.901 38 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.059 -13.854 -18.969 24.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.114 4.114 3 C -0.185 4.185 4 C -0.066 4.066 5 N -0.259 5.259 6 C 0.050 3.950 7 C -0.547 4.547 8 H 0.054 0.946 9 C -0.191 4.191 10 N -0.593 5.593 11 Si 0.769 3.231 12 H -0.197 1.197 13 H -0.215 1.215 14 H -0.162 1.162 15 C -0.015 4.015 16 C -0.256 4.256 17 N -0.103 5.103 18 N -0.062 5.062 19 C -0.450 4.450 20 C 0.512 3.488 21 F -0.139 7.139 22 F -0.135 7.135 23 F -0.137 7.137 24 S 0.589 5.411 25 H 0.068 0.932 26 H 0.083 0.917 27 H 0.095 0.905 28 H 0.078 0.922 29 H 0.058 0.942 30 H 0.066 0.934 31 H 0.052 0.948 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.023 0.977 35 H 0.052 0.948 36 H 0.073 0.927 37 H 0.116 0.884 38 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -6.622 -13.109 -19.044 24.049 hybrid contribution 0.483 -0.077 0.902 1.026 sum -6.139 -13.186 -18.141 23.252 Atomic orbital electron populations 1.21790 0.93145 1.02952 1.02070 1.21427 0.96762 0.95889 0.97361 1.21565 1.00595 0.96515 0.99800 1.22292 0.86404 0.99435 0.98483 1.61536 1.09118 1.44287 1.10998 1.19977 0.95140 0.95220 0.84658 1.21232 1.34189 0.99877 0.99389 0.94574 1.25841 0.97208 0.98391 0.97654 1.70063 1.47938 1.28036 1.13300 0.85744 0.79302 0.80618 0.77389 1.19656 1.21470 1.16160 1.20945 1.04510 0.93311 0.82724 1.29913 0.95275 0.95735 1.04708 1.71595 1.24094 1.14516 1.00143 1.71549 1.11761 1.19804 1.03055 1.29298 1.05641 1.06844 1.03265 1.16424 0.75466 0.74866 0.82002 1.93269 1.72462 1.67624 1.80592 1.93288 1.96008 1.40304 1.83856 1.93295 1.34901 1.88984 1.96560 1.83257 1.30503 1.31179 0.96193 0.93209 0.91712 0.90546 0.92209 0.94191 0.93370 0.94755 0.92435 0.92166 0.97660 0.94752 0.92691 0.88367 0.86768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 9.19 71.98 0.66 -2.55 16 2 C -0.09 -2.71 2.68 -10.79 -0.03 -2.74 16 3 C -0.13 -4.52 8.99 71.98 0.65 -3.88 16 4 C 0.06 1.99 4.24 86.30 0.37 2.35 16 5 N -0.54 -19.27 3.76 -905.38 -3.41 -22.68 16 6 C 0.18 7.52 3.77 85.55 0.32 7.85 16 7 C -0.51 -27.92 8.94 25.60 0.23 -27.69 16 8 H 0.04 2.27 7.83 -2.91 -0.02 2.24 16 9 C 0.01 0.33 5.47 84.66 0.46 0.79 16 10 N -0.95 -58.86 13.96 21.45 0.30 -58.57 16 11 Si 0.95 41.88 27.37 68.60 1.88 43.76 16 12 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 13 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 14 H -0.24 -9.31 6.69 99.48 0.67 -8.65 16 15 C 0.12 3.09 5.62 85.56 0.48 3.57 16 16 C 0.02 0.54 5.14 88.46 0.45 1.00 16 17 N -0.26 -8.63 11.66 -50.85 -0.59 -9.22 16 18 N -0.22 -6.76 11.41 -50.85 -0.58 -7.34 16 19 C -0.17 -4.07 6.83 88.46 0.60 -3.47 16 20 C 0.57 11.66 3.55 71.23 0.25 11.91 16 21 F -0.16 -3.68 17.13 44.97 0.77 -2.91 16 22 F -0.15 -2.66 17.30 44.97 0.78 -1.88 16 23 F -0.16 -3.00 17.30 44.97 0.78 -2.22 16 24 S 0.34 6.33 20.79 -56.49 -1.17 5.15 16 25 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.06 1.53 3.35 -11.88 -0.04 1.49 16 29 H 0.04 1.65 7.81 -2.39 -0.02 1.63 16 30 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.03 1.34 8.14 -2.39 -0.02 1.33 16 32 H 0.06 1.48 7.63 -2.39 -0.02 1.46 16 33 H 0.06 2.39 6.95 -2.39 -0.02 2.37 16 34 H 0.01 0.23 7.45 -2.39 -0.02 0.21 16 35 H 0.03 1.43 6.82 -2.39 -0.02 1.42 16 36 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 37 H 0.10 1.84 7.64 -2.38 -0.02 1.82 16 38 H 0.11 2.93 7.61 -2.38 -0.02 2.91 16 Total: -1.00 -68.04 338.13 4.23 -63.82 By element: Atomic # 1 Polarization: 3.92 SS G_CDS: 1.02 Total: 4.94 kcal Atomic # 6 Polarization: -17.31 SS G_CDS: 4.45 Total: -12.86 kcal Atomic # 7 Polarization: -93.53 SS G_CDS: -4.28 Total: -97.81 kcal Atomic # 9 Polarization: -9.33 SS G_CDS: 2.33 Total: -7.01 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 1.88 Total: 43.76 kcal Atomic # 16 Polarization: 6.33 SS G_CDS: -1.17 Total: 5.15 kcal Total: -68.04 4.23 -63.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851778521.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.612 kcal (2) G-P(sol) polarization free energy of solvation -68.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds