Wall clock time and date at job start Tue Mar 31 2020 14:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.46978 * 2 1 4 4 C 1.52999 * 109.47394 * 240.00200 * 2 1 3 5 5 Cl 1.80296 * 109.47064 * 59.99517 * 4 2 1 6 6 C 1.53002 * 109.47225 * 119.99628 * 2 1 3 7 7 S 1.81397 * 109.47293 * 300.00230 * 6 2 1 8 8 O 1.42105 * 110.54189 * 68.37430 * 7 6 2 9 9 O 1.42099 * 110.54203 * 291.62169 * 7 6 2 10 10 N 1.65608 * 104.44917 * 179.97438 * 7 6 2 11 11 C 1.46494 * 119.99583 * 90.00089 * 10 7 6 12 12 C 1.50703 * 109.47225 * 95.00259 * 11 10 7 13 13 H 1.07996 * 120.00066 * 359.97438 * 12 11 10 14 14 C 1.37879 * 119.99842 * 179.97438 * 12 11 10 15 15 N 1.31513 * 119.99597 * 179.97438 * 14 12 11 16 16 Si 1.86797 * 120.00371 * 359.97438 * 14 12 11 17 17 H 1.48502 * 109.47175 * 89.99893 * 16 14 12 18 18 H 1.48496 * 109.47237 * 209.99970 * 16 14 12 19 19 H 1.48502 * 109.46952 * 330.00114 * 16 14 12 20 20 C 1.46493 * 119.99916 * 269.72772 * 10 7 6 21 21 C 1.52997 * 109.47398 * 95.00006 * 20 10 7 22 22 C 1.53005 * 117.49989 * 243.61967 * 21 20 10 23 23 C 1.52997 * 60.00061 * 252.50806 * 22 21 20 24 24 H 1.09003 * 109.47406 * 300.00057 * 1 2 3 25 25 H 1.08998 * 109.47432 * 60.00000 * 1 2 3 26 26 H 1.09001 * 109.46960 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47146 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.47039 * 300.00241 * 3 2 1 29 29 H 1.09006 * 109.46851 * 60.00226 * 3 2 1 30 30 H 1.08996 * 109.47254 * 179.97438 * 4 2 1 31 31 H 1.09001 * 109.46817 * 299.99781 * 4 2 1 32 32 H 1.09001 * 109.47069 * 179.97438 * 6 2 1 33 33 H 1.09001 * 109.46935 * 60.00250 * 6 2 1 34 34 H 1.09005 * 109.47101 * 215.00381 * 11 10 7 35 35 H 1.09001 * 109.47746 * 334.99625 * 11 10 7 36 36 H 0.97008 * 119.99656 * 179.97438 * 15 14 12 37 37 H 1.09004 * 109.46868 * 214.99641 * 20 10 7 38 38 H 1.09004 * 109.47439 * 334.99764 * 20 10 7 39 39 H 1.08997 * 115.54840 * 29.32534 * 21 20 10 40 40 H 1.09002 * 117.49693 * 0.02562 * 22 21 20 41 41 H 1.09000 * 117.49634 * 145.01940 * 22 21 20 42 42 H 1.09001 * 117.50089 * 252.51283 * 23 22 21 43 43 H 1.09003 * 117.50184 * 107.48619 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 17 1.4389 0.1287 -2.7213 6 6 2.0400 -0.7212 1.2493 7 16 1.4353 0.1340 2.7304 8 8 0.0279 -0.0183 2.8544 9 8 2.0479 1.4101 2.8544 10 7 2.0530 -0.7407 3.9937 11 6 3.3623 -0.3954 4.5527 12 6 3.1775 0.5123 5.7414 13 1 2.1841 0.8032 6.0494 14 6 4.2767 0.9714 6.4357 15 7 4.1153 1.7639 7.4728 16 14 5.9949 0.4677 5.9035 17 1 6.5164 1.4504 4.9198 18 1 6.8894 0.4311 7.0883 19 1 5.9450 -0.8787 5.2792 20 6 1.2875 -1.8560 4.5560 21 6 1.7402 -3.1647 3.9056 22 6 0.7110 -3.9335 3.0744 23 6 1.1402 -4.4654 4.4433 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1299 1.4426 0.0005 28 1 1.6765 1.9564 -0.8900 29 1 1.6766 1.9563 0.8901 30 1 3.1300 -0.7208 -1.2494 31 1 1.6767 -1.7489 -1.2492 32 1 3.1300 -0.7216 1.2490 33 1 1.6767 -1.7489 1.2493 34 1 3.8749 -1.3049 4.8662 35 1 3.9578 0.1145 3.7953 36 1 4.8887 2.0866 7.9616 37 1 1.4570 -1.9072 5.6316 38 1 0.2259 -1.7022 4.3624 39 1 2.7773 -3.1893 3.5712 40 1 -0.2884 -3.5067 2.9907 41 1 1.0711 -4.4640 2.1929 42 1 1.7826 -5.3458 4.4623 43 1 0.4230 -4.3888 5.2605 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000866736779.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:12 Heat of formation + Delta-G solvation = -62.332321 kcal Electronic energy + Delta-G solvation = -24992.097379 eV Core-core repulsion = 21419.194123 eV Total energy + Delta-G solvation = -3572.903256 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 323.111 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -38.07538 -37.82527 -36.64310 -35.74985 -35.40523 -34.93488 -32.35037 -28.44495 -27.93126 -27.41077 -27.36961 -25.59315 -22.41382 -22.07426 -20.48344 -19.52631 -18.28464 -17.37884 -16.95125 -16.05126 -15.93515 -15.46463 -15.14953 -14.85470 -14.40731 -14.22439 -14.01743 -13.87202 -13.43982 -13.22738 -12.68446 -12.55989 -12.47149 -12.07594 -11.97008 -11.85265 -11.72913 -11.48787 -11.45620 -11.38254 -11.24492 -11.16415 -11.03567 -10.79444 -10.72576 -10.60895 -10.49632 -10.41138 -10.20400 -10.05647 -9.73957 -9.54123 -8.60514 -8.17578 -6.08890 -4.07828 0.66222 2.05359 3.14571 3.25433 3.28860 3.33429 3.85271 4.19181 4.24857 4.31793 4.36377 4.49418 4.61467 4.82519 4.93033 4.98167 5.00939 5.07465 5.19198 5.21449 5.35929 5.43363 5.49088 5.62329 5.63399 5.64535 5.74763 5.80056 5.89897 5.90478 5.98823 6.13585 6.17179 6.24801 6.38993 6.44368 6.65628 7.01541 7.30440 7.55825 8.48109 8.97136 9.49830 11.04795 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.012595 B = 0.004941 C = 0.004117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2222.576383 B = 5665.318995 C = 6799.599568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.054 4.054 3 C -0.182 4.182 4 C -0.012 4.012 5 Cl -0.183 7.183 6 C -0.639 4.639 7 S 2.610 3.390 8 O -0.964 6.964 9 O -0.930 6.930 10 N -0.976 5.976 11 C 0.225 3.775 12 C -0.527 4.527 13 H 0.079 0.921 14 C 0.074 3.926 15 N -0.894 5.894 16 Si 0.869 3.131 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.265 1.265 20 C 0.149 3.851 21 C -0.176 4.176 22 C -0.193 4.193 23 C -0.172 4.172 24 H 0.079 0.921 25 H 0.076 0.924 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.131 0.869 33 H 0.132 0.868 34 H 0.035 0.965 35 H 0.028 0.972 36 H 0.265 0.735 37 H 0.095 0.905 38 H 0.086 0.914 39 H 0.108 0.892 40 H 0.098 0.902 41 H 0.089 0.911 42 H 0.092 0.908 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.319 -10.654 -15.867 19.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.056 4.056 3 C -0.239 4.239 4 C -0.076 4.076 5 Cl -0.157 7.157 6 C -0.765 4.765 7 S 2.701 3.299 8 O -0.954 6.954 9 O -0.920 6.920 10 N -0.812 5.812 11 C 0.102 3.898 12 C -0.566 4.566 13 H 0.097 0.903 14 C -0.129 4.129 15 N -0.533 5.533 16 Si 0.695 3.305 17 H -0.198 1.198 18 H -0.209 1.209 19 H -0.190 1.190 20 C 0.022 3.978 21 C -0.196 4.196 22 C -0.230 4.230 23 C -0.209 4.209 24 H 0.098 0.902 25 H 0.095 0.905 26 H 0.087 0.913 27 H 0.089 0.911 28 H 0.096 0.904 29 H 0.099 0.901 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.150 0.850 33 H 0.150 0.850 34 H 0.052 0.948 35 H 0.046 0.954 36 H 0.075 0.925 37 H 0.113 0.887 38 H 0.105 0.895 39 H 0.126 0.874 40 H 0.116 0.884 41 H 0.108 0.892 42 H 0.110 0.890 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -4.770 -9.723 -15.758 19.121 hybrid contribution 1.566 -0.882 -0.525 1.872 sum -3.204 -10.605 -16.283 19.694 Atomic orbital electron populations 1.22426 0.92502 1.03906 1.04774 1.20435 0.97214 0.96240 0.91673 1.22457 1.02747 0.93866 1.04845 1.24487 1.01540 0.97526 0.84057 1.98702 1.90565 1.81829 1.44604 1.30983 1.12971 1.14258 1.18319 1.05112 0.74573 0.75293 0.74932 1.93511 1.29521 1.86912 1.85449 1.93638 1.77615 1.36336 1.84413 1.57172 1.31475 1.45929 1.46658 1.19475 0.78945 0.96379 0.95012 1.21330 0.95689 1.28519 1.11100 0.90317 1.24854 0.98776 0.94553 0.94707 1.69893 1.30580 1.33423 1.19380 0.86976 0.85144 0.79577 0.78765 1.19804 1.20929 1.18990 1.20855 0.95072 0.82187 0.99673 1.23067 0.98801 0.93651 1.04066 1.23149 1.00105 1.04804 0.94904 1.22871 1.03758 0.97091 0.97206 0.90200 0.90468 0.91327 0.91122 0.90445 0.90060 0.88555 0.88626 0.85011 0.84999 0.94752 0.95385 0.92530 0.88718 0.89540 0.87376 0.88354 0.89211 0.88987 0.88487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.11 7.79 37.16 0.29 -1.82 16 2 C -0.05 -0.62 0.58 -154.51 -0.09 -0.71 16 3 C -0.18 -2.33 7.79 37.16 0.29 -2.05 16 4 C -0.01 -0.11 5.60 37.16 0.21 0.10 16 5 Cl -0.18 -1.87 26.53 -51.86 -1.38 -3.24 16 6 C -0.64 -7.79 5.18 37.16 0.19 -7.60 16 7 S 2.61 46.58 4.41 -107.50 -0.47 46.10 16 8 O -0.96 -18.10 14.14 -57.54 -0.81 -18.91 16 9 O -0.93 -20.40 14.61 -57.54 -0.84 -21.24 16 10 N -0.98 -18.46 2.70 -115.67 -0.31 -18.77 16 11 C 0.23 5.03 4.08 -5.20 -0.02 5.00 16 12 C -0.53 -14.65 9.94 -34.44 -0.34 -14.99 16 13 H 0.08 2.43 8.06 -52.49 -0.42 2.00 16 14 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 15 N -0.89 -27.17 13.96 55.43 0.77 -26.40 16 16 Si 0.87 20.55 27.47 -169.99 -4.67 15.88 16 17 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.27 -5.75 6.54 56.52 0.37 -5.38 16 20 C 0.15 2.41 5.94 -4.05 -0.02 2.38 16 21 C -0.18 -2.24 6.01 -90.62 -0.54 -2.79 16 22 C -0.19 -2.02 10.18 -26.73 -0.27 -2.30 16 23 C -0.17 -1.85 10.25 -26.73 -0.27 -2.12 16 24 H 0.08 1.10 5.46 -51.93 -0.28 0.82 16 25 H 0.08 0.83 7.06 -51.93 -0.37 0.46 16 26 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.08 0.89 7.06 -51.93 -0.37 0.52 16 29 H 0.08 1.23 5.46 -51.93 -0.28 0.94 16 30 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.13 1.42 8.14 -51.92 -0.42 1.00 16 33 H 0.13 1.29 8.14 -51.92 -0.42 0.87 16 34 H 0.03 0.73 7.17 -51.93 -0.37 0.35 16 35 H 0.03 0.62 7.04 -51.93 -0.37 0.25 16 36 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 37 H 0.09 1.63 8.11 -51.93 -0.42 1.21 16 38 H 0.09 1.35 6.54 -51.93 -0.34 1.01 16 39 H 0.11 1.37 8.14 -51.93 -0.42 0.95 16 40 H 0.10 1.03 8.03 -51.93 -0.42 0.62 16 41 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 363.09 15.07 5.47 5.47 Total: -1.00 -32.77 363.09 -9.96 -42.73 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -7.03 Total: 3.27 kcal Atomic # 6 Polarization: -24.21 SS G_CDS: -0.69 Total: -24.89 kcal Atomic # 7 Polarization: -45.63 SS G_CDS: 0.46 Total: -45.17 kcal Atomic # 8 Polarization: -38.50 SS G_CDS: -1.65 Total: -40.15 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -4.67 Total: 15.88 kcal Atomic # 16 Polarization: 46.58 SS G_CDS: -0.47 Total: 46.10 kcal Atomic # 17 Polarization: -1.87 SS G_CDS: -1.38 Total: -3.24 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.77 -9.96 -42.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000866736779.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.606 kcal (2) G-P(sol) polarization free energy of solvation -32.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds