Wall clock time and date at job start Tue Mar 31 2020 14:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.46978 * 2 1 4 4 C 1.52999 * 109.47394 * 240.00200 * 2 1 3 5 5 Cl 1.80296 * 109.47064 * 59.99517 * 4 2 1 6 6 C 1.53002 * 109.47225 * 119.99628 * 2 1 3 7 7 S 1.81397 * 109.47293 * 300.00230 * 6 2 1 8 8 O 1.42105 * 110.54189 * 68.37430 * 7 6 2 9 9 O 1.42099 * 110.54203 * 291.62169 * 7 6 2 10 10 N 1.65608 * 104.44917 * 179.97438 * 7 6 2 11 11 C 1.46494 * 119.99583 * 90.00089 * 10 7 6 12 12 C 1.50703 * 109.47225 * 95.00259 * 11 10 7 13 13 H 1.07996 * 120.00066 * 359.97438 * 12 11 10 14 14 C 1.37879 * 119.99842 * 179.97438 * 12 11 10 15 15 N 1.31513 * 119.99597 * 179.97438 * 14 12 11 16 16 Si 1.86797 * 120.00371 * 359.97438 * 14 12 11 17 17 H 1.48502 * 109.47175 * 89.99893 * 16 14 12 18 18 H 1.48496 * 109.47237 * 209.99970 * 16 14 12 19 19 H 1.48502 * 109.46952 * 330.00114 * 16 14 12 20 20 C 1.46493 * 119.99916 * 269.72772 * 10 7 6 21 21 C 1.52997 * 109.47398 * 95.00006 * 20 10 7 22 22 C 1.53005 * 117.49989 * 243.61967 * 21 20 10 23 23 C 1.52997 * 60.00061 * 252.50806 * 22 21 20 24 24 H 1.09003 * 109.47406 * 300.00057 * 1 2 3 25 25 H 1.08998 * 109.47432 * 60.00000 * 1 2 3 26 26 H 1.09001 * 109.46960 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47146 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.47039 * 300.00241 * 3 2 1 29 29 H 1.09006 * 109.46851 * 60.00226 * 3 2 1 30 30 H 1.08996 * 109.47254 * 179.97438 * 4 2 1 31 31 H 1.09001 * 109.46817 * 299.99781 * 4 2 1 32 32 H 1.09001 * 109.47069 * 179.97438 * 6 2 1 33 33 H 1.09001 * 109.46935 * 60.00250 * 6 2 1 34 34 H 1.09005 * 109.47101 * 215.00381 * 11 10 7 35 35 H 1.09001 * 109.47746 * 334.99625 * 11 10 7 36 36 H 0.97008 * 119.99656 * 179.97438 * 15 14 12 37 37 H 1.09004 * 109.46868 * 214.99641 * 20 10 7 38 38 H 1.09004 * 109.47439 * 334.99764 * 20 10 7 39 39 H 1.08997 * 115.54840 * 29.32534 * 21 20 10 40 40 H 1.09002 * 117.49693 * 0.02562 * 22 21 20 41 41 H 1.09000 * 117.49634 * 145.01940 * 22 21 20 42 42 H 1.09001 * 117.50089 * 252.51283 * 23 22 21 43 43 H 1.09003 * 117.50184 * 107.48619 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 17 1.4389 0.1287 -2.7213 6 6 2.0400 -0.7212 1.2493 7 16 1.4353 0.1340 2.7304 8 8 0.0279 -0.0183 2.8544 9 8 2.0479 1.4101 2.8544 10 7 2.0530 -0.7407 3.9937 11 6 3.3623 -0.3954 4.5527 12 6 3.1775 0.5123 5.7414 13 1 2.1841 0.8032 6.0494 14 6 4.2767 0.9714 6.4357 15 7 4.1153 1.7639 7.4728 16 14 5.9949 0.4677 5.9035 17 1 6.5164 1.4504 4.9198 18 1 6.8894 0.4311 7.0883 19 1 5.9450 -0.8787 5.2792 20 6 1.2875 -1.8560 4.5560 21 6 1.7402 -3.1647 3.9056 22 6 0.7110 -3.9335 3.0744 23 6 1.1402 -4.4654 4.4433 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1299 1.4426 0.0005 28 1 1.6765 1.9564 -0.8900 29 1 1.6766 1.9563 0.8901 30 1 3.1300 -0.7208 -1.2494 31 1 1.6767 -1.7489 -1.2492 32 1 3.1300 -0.7216 1.2490 33 1 1.6767 -1.7489 1.2493 34 1 3.8749 -1.3049 4.8662 35 1 3.9578 0.1145 3.7953 36 1 4.8887 2.0866 7.9616 37 1 1.4570 -1.9072 5.6316 38 1 0.2259 -1.7022 4.3624 39 1 2.7773 -3.1893 3.5712 40 1 -0.2884 -3.5067 2.9907 41 1 1.0711 -4.4640 2.1929 42 1 1.7826 -5.3458 4.4623 43 1 0.4230 -4.3888 5.2605 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000866736779.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:11 Heat of formation + Delta-G solvation = -83.943349 kcal Electronic energy + Delta-G solvation = -24993.034503 eV Core-core repulsion = 21419.194123 eV Total energy + Delta-G solvation = -3573.840380 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 323.111 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -38.99084 -38.90049 -38.12168 -36.93047 -36.50121 -36.29344 -34.39017 -30.21095 -28.98945 -28.36106 -28.12791 -27.05959 -23.99210 -23.11225 -21.55037 -20.50244 -19.68181 -18.99765 -18.73048 -17.42344 -17.26044 -16.44256 -16.34049 -15.91299 -15.80349 -15.46707 -15.12587 -14.99444 -14.56192 -14.41762 -14.10740 -14.03287 -13.67238 -13.49297 -13.30972 -13.02110 -12.95701 -12.92698 -12.53235 -12.45279 -12.38233 -12.31769 -12.23617 -12.19772 -12.04584 -12.00406 -11.73277 -11.65387 -11.21504 -11.20014 -11.05441 -10.77565 -10.72277 -9.71014 -8.26457 -6.31796 -0.67832 1.35079 1.37055 1.41881 1.49835 1.79838 2.37233 2.96281 2.99026 3.07377 3.20323 3.39393 3.50953 3.54554 3.88567 3.97170 4.03814 4.10809 4.16132 4.33346 4.42826 4.50626 4.52275 4.53257 4.64510 4.80222 4.82909 4.85634 4.87647 4.90785 4.95000 5.01597 5.11747 5.24377 5.26520 5.33081 5.37310 5.44163 5.51538 5.79195 6.33557 6.71033 7.30527 8.91752 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.012595 B = 0.004941 C = 0.004117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2222.576383 B = 5665.318995 C = 6799.599568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.054 4.054 3 C -0.190 4.190 4 C -0.008 4.008 5 Cl -0.194 7.194 6 C -0.602 4.602 7 S 2.593 3.407 8 O -0.988 6.988 9 O -0.987 6.987 10 N -0.986 5.986 11 C 0.233 3.767 12 C -0.538 4.538 13 H 0.021 0.979 14 C 0.003 3.997 15 N -0.953 5.953 16 Si 0.943 3.057 17 H -0.268 1.268 18 H -0.282 1.282 19 H -0.222 1.222 20 C 0.145 3.855 21 C -0.190 4.190 22 C -0.176 4.176 23 C -0.169 4.169 24 H 0.050 0.950 25 H 0.084 0.916 26 H 0.089 0.911 27 H 0.079 0.921 28 H 0.086 0.914 29 H 0.049 0.951 30 H 0.117 0.883 31 H 0.124 0.876 32 H 0.160 0.840 33 H 0.170 0.830 34 H 0.058 0.942 35 H 0.040 0.960 36 H 0.266 0.734 37 H 0.067 0.933 38 H 0.081 0.919 39 H 0.119 0.881 40 H 0.094 0.906 41 H 0.119 0.881 42 H 0.111 0.889 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.428 -14.390 -19.400 24.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.056 4.056 3 C -0.247 4.247 4 C -0.072 4.072 5 Cl -0.167 7.167 6 C -0.735 4.735 7 S 2.691 3.309 8 O -0.979 6.979 9 O -0.978 6.978 10 N -0.822 5.822 11 C 0.109 3.891 12 C -0.577 4.577 13 H 0.039 0.961 14 C -0.194 4.194 15 N -0.593 5.593 16 Si 0.764 3.236 17 H -0.193 1.193 18 H -0.208 1.208 19 H -0.145 1.145 20 C 0.019 3.981 21 C -0.210 4.210 22 C -0.213 4.213 23 C -0.206 4.206 24 H 0.069 0.931 25 H 0.103 0.897 26 H 0.107 0.893 27 H 0.098 0.902 28 H 0.105 0.895 29 H 0.068 0.932 30 H 0.135 0.865 31 H 0.142 0.858 32 H 0.178 0.822 33 H 0.188 0.812 34 H 0.075 0.925 35 H 0.057 0.943 36 H 0.075 0.925 37 H 0.086 0.914 38 H 0.100 0.900 39 H 0.137 0.863 40 H 0.113 0.887 41 H 0.137 0.863 42 H 0.129 0.871 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.939 -13.458 -19.241 23.663 hybrid contribution 0.786 0.348 0.561 1.026 sum -2.153 -13.110 -18.680 22.923 Atomic orbital electron populations 1.22485 0.92960 1.04970 1.03776 1.20471 0.96950 0.95527 0.92689 1.22522 1.03379 0.95026 1.03771 1.24563 1.02773 0.98028 0.81795 1.98713 1.90755 1.82238 1.45038 1.30607 1.14552 1.14826 1.13471 1.05269 0.74085 0.74886 0.76623 1.93477 1.30874 1.87047 1.86469 1.93576 1.78161 1.40058 1.85973 1.57064 1.30379 1.46583 1.48135 1.19227 0.81008 0.95874 0.93039 1.21699 0.93321 1.29450 1.13267 0.96105 1.25984 1.04442 0.94415 0.94519 1.70094 1.32216 1.35619 1.21412 0.85801 0.77876 0.81309 0.78607 1.19270 1.20752 1.14467 1.20900 0.94806 0.83713 0.98678 1.22844 0.99907 0.92102 1.06104 1.23264 0.99104 1.03255 0.95638 1.22993 1.03580 0.96453 0.97614 0.93080 0.89686 0.89253 0.90206 0.89489 0.93230 0.86509 0.85766 0.82206 0.81181 0.92453 0.94260 0.92491 0.91419 0.90028 0.86327 0.88741 0.86320 0.87115 0.88966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.96 7.79 71.98 0.56 -3.39 16 2 C -0.05 -1.07 0.58 -52.18 -0.03 -1.10 16 3 C -0.19 -4.61 7.79 71.98 0.56 -4.05 16 4 C -0.01 -0.11 5.60 71.98 0.40 0.30 16 5 Cl -0.19 -3.28 26.53 -2.72 -0.07 -3.36 16 6 C -0.60 -12.35 5.18 71.98 0.37 -11.98 16 7 S 2.59 93.12 4.41 -56.49 -0.25 92.87 16 8 O -0.99 -38.40 14.14 -127.65 -1.81 -40.21 16 9 O -0.99 -45.37 14.61 -127.65 -1.86 -47.23 16 10 N -0.99 -37.46 2.70 -519.86 -1.40 -38.86 16 11 C 0.23 10.32 4.08 85.64 0.35 10.67 16 12 C -0.54 -31.38 9.94 25.60 0.25 -31.13 16 13 H 0.02 1.39 8.06 -2.91 -0.02 1.37 16 14 C 0.00 0.20 5.47 84.66 0.46 0.67 16 15 N -0.95 -60.96 13.96 21.45 0.30 -60.66 16 16 Si 0.94 41.97 27.47 68.60 1.88 43.86 16 17 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 18 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 19 H -0.22 -8.32 6.54 99.48 0.65 -7.67 16 20 C 0.14 4.73 5.94 86.38 0.51 5.25 16 21 C -0.19 -4.32 6.01 -10.79 -0.06 -4.38 16 22 C -0.18 -2.98 10.18 30.59 0.31 -2.67 16 23 C -0.17 -3.13 10.25 30.59 0.31 -2.82 16 24 H 0.05 1.41 5.46 -2.39 -0.01 1.39 16 25 H 0.08 1.66 7.06 -2.39 -0.02 1.64 16 26 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.09 1.89 7.06 -2.39 -0.02 1.87 16 29 H 0.05 1.54 5.46 -2.38 -0.01 1.53 16 30 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.16 2.58 8.14 -2.39 -0.02 2.56 16 33 H 0.17 2.32 8.14 -2.39 -0.02 2.30 16 34 H 0.06 2.28 7.17 -2.38 -0.02 2.26 16 35 H 0.04 1.66 7.04 -2.39 -0.02 1.65 16 36 H 0.27 15.80 8.31 -92.70 -0.77 15.03 16 37 H 0.07 2.49 8.11 -2.39 -0.02 2.47 16 38 H 0.08 2.66 6.54 -2.39 -0.02 2.65 16 39 H 0.12 2.49 8.14 -2.39 -0.02 2.47 16 40 H 0.09 1.70 8.03 -2.39 -0.02 1.68 16 41 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -79.31 363.09 1.72 -77.59 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: 0.93 Total: 20.64 kcal Atomic # 6 Polarization: -48.65 SS G_CDS: 4.01 Total: -44.64 kcal Atomic # 7 Polarization: -98.42 SS G_CDS: -1.10 Total: -99.52 kcal Atomic # 8 Polarization: -83.77 SS G_CDS: -3.67 Total: -87.44 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 1.88 Total: 43.86 kcal Atomic # 16 Polarization: 93.12 SS G_CDS: -0.25 Total: 92.87 kcal Atomic # 17 Polarization: -3.28 SS G_CDS: -0.07 Total: -3.36 kcal Total: -79.31 1.72 -77.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000866736779.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.354 kcal (2) G-P(sol) polarization free energy of solvation -79.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds