Wall clock time and date at job start Tue Mar 31 2020 14:05:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00122 * 2 1 3 5 5 Cl 1.80297 * 109.46708 * 299.99786 * 4 2 1 6 6 C 1.52999 * 109.47317 * 239.99633 * 2 1 3 7 7 S 1.81409 * 109.46814 * 60.00042 * 6 2 1 8 8 O 1.42096 * 110.54119 * 291.62426 * 7 6 2 9 9 O 1.42097 * 110.54031 * 68.37593 * 7 6 2 10 10 N 1.65601 * 104.44942 * 180.02562 * 7 6 2 11 11 C 1.46929 * 120.62878 * 269.72474 * 10 7 6 12 12 C 1.53617 * 108.54404 * 126.36816 * 11 10 7 13 13 C 1.53039 * 109.24375 * 54.85416 * 12 11 10 14 14 C 1.50702 * 109.44863 * 178.49599 * 13 12 11 15 15 H 1.08003 * 119.99919 * 120.06725 * 14 13 12 16 16 C 1.37881 * 120.00326 * 300.06000 * 14 13 12 17 17 N 1.31512 * 119.99511 * 359.97438 * 16 14 13 18 18 Si 1.86791 * 120.00179 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47236 * 60.00101 * 18 16 14 20 20 H 1.48498 * 109.47230 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47417 * 299.99951 * 18 16 14 22 22 C 1.53037 * 109.53971 * 298.50952 * 13 12 11 23 23 C 1.46925 * 120.63327 * 89.99776 * 10 7 6 24 24 H 1.09001 * 109.46832 * 300.00199 * 1 2 3 25 25 H 1.09002 * 109.47153 * 60.00008 * 1 2 3 26 26 H 1.08996 * 109.46952 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47140 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.47230 * 299.99295 * 3 2 1 29 29 H 1.09001 * 109.47375 * 60.00133 * 3 2 1 30 30 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 31 31 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 32 32 H 1.09000 * 109.47486 * 180.02562 * 6 2 1 33 33 H 1.09001 * 109.47362 * 300.00732 * 6 2 1 34 34 H 1.09002 * 109.58224 * 246.20143 * 11 10 7 35 35 H 1.08998 * 109.58544 * 6.62364 * 11 10 7 36 36 H 1.09002 * 109.63701 * 294.86117 * 12 11 10 37 37 H 1.09009 * 109.43167 * 174.72173 * 12 11 10 38 38 H 1.08997 * 109.46006 * 58.53002 * 13 12 11 39 39 H 0.97000 * 120.00020 * 179.97438 * 17 16 14 40 40 H 1.09007 * 109.49424 * 301.41666 * 22 13 12 41 41 H 1.08995 * 109.49947 * 181.31580 * 22 13 12 42 42 H 1.09004 * 109.58433 * 353.37553 * 23 10 7 43 43 H 1.09001 * 109.58342 * 113.65153 * 23 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 17 1.4390 0.1287 2.7213 6 6 2.0400 -0.7213 -1.2492 7 16 1.4353 0.1338 -2.7304 8 8 0.0280 -0.0184 -2.8544 9 8 2.0479 1.4099 -2.8544 10 7 2.0530 -0.7409 -3.9936 11 6 3.3620 -0.4029 -4.5689 12 6 4.2370 -1.6655 -4.5673 13 6 3.5009 -2.7903 -5.2987 14 6 4.3707 -4.0206 -5.3321 15 1 4.0268 -4.9375 -4.8767 16 6 5.6054 -3.9756 -5.9441 17 7 6.0238 -2.8592 -6.4992 18 14 6.6831 -5.5007 -5.9861 19 1 5.9697 -6.5916 -6.6975 20 1 7.9498 -5.1923 -6.6972 21 1 6.9866 -5.9309 -4.5975 22 6 2.1954 -3.1086 -4.5664 23 6 1.2997 -1.8659 -4.5643 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 3.1300 1.4424 -0.0005 28 1 1.6768 1.9563 -0.8901 29 1 1.6767 1.9563 0.8900 30 1 1.6767 -1.7489 1.2492 31 1 3.1300 -0.7217 1.2490 32 1 3.1300 -0.7217 -1.2490 33 1 1.6766 -1.7490 -1.2492 34 1 3.2311 -0.0470 -5.5908 35 1 3.8361 0.3727 -3.9675 36 1 4.4385 -1.9703 -3.5403 37 1 5.1779 -1.4554 -5.0761 38 1 3.2779 -2.4755 -6.3182 39 1 6.8926 -2.8274 -6.9295 40 1 2.4161 -3.3997 -3.5393 41 1 1.6831 -3.9255 -5.0745 42 1 0.4127 -2.0558 -3.9599 43 1 1.0018 -1.6258 -5.5850 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867077998.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:58 Heat of formation + Delta-G solvation = -101.026514 kcal Electronic energy + Delta-G solvation = -24861.386766 eV Core-core repulsion = 21286.805604 eV Total energy + Delta-G solvation = -3574.581162 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 323.111 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -38.19979 -37.78435 -37.05778 -35.92533 -35.63486 -33.48485 -30.93519 -30.12821 -28.05693 -27.54455 -27.44914 -25.79144 -22.57034 -22.37400 -19.96293 -19.26673 -18.43861 -17.58740 -16.40469 -16.21218 -16.04369 -15.35156 -15.11379 -14.61449 -14.29077 -14.15168 -13.67761 -13.47993 -13.30328 -13.19767 -12.93159 -12.84289 -12.72679 -12.21812 -12.14106 -12.01645 -11.66509 -11.58287 -11.54215 -11.30344 -11.22933 -11.06767 -10.97610 -10.81495 -10.72074 -10.54742 -10.46117 -10.27497 -10.11456 -9.66300 -9.26909 -9.05042 -8.47015 -8.29853 -6.06938 -4.13912 0.36494 1.99977 2.84327 3.25390 3.31318 3.33227 3.88740 4.10570 4.19187 4.32006 4.36404 4.40852 4.80724 4.89142 5.09361 5.15992 5.22588 5.23047 5.35448 5.47891 5.62925 5.63926 5.67902 5.76806 5.84206 6.02497 6.04351 6.07052 6.10138 6.27615 6.35224 6.38082 6.65241 6.82907 6.99857 7.09151 7.34210 7.64212 7.87818 8.01194 8.35199 8.89716 9.51477 10.98331 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.017531 B = 0.003671 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.826241 B = 7625.079238 C = 8388.157477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.056 4.056 3 C -0.180 4.180 4 C -0.014 4.014 5 Cl -0.183 7.183 6 C -0.631 4.631 7 S 2.613 3.387 8 O -0.959 6.959 9 O -0.955 6.955 10 N -0.992 5.992 11 C 0.117 3.883 12 C -0.124 4.124 13 C 0.050 3.950 14 C -0.516 4.516 15 H 0.054 0.946 16 C 0.062 3.938 17 N -0.890 5.890 18 Si 0.890 3.110 19 H -0.278 1.278 20 H -0.287 1.287 21 H -0.278 1.278 22 C -0.125 4.125 23 C 0.121 3.879 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.137 0.863 33 H 0.135 0.865 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.037 0.963 37 H 0.104 0.896 38 H 0.029 0.971 39 H 0.261 0.739 40 H 0.050 0.950 41 H 0.061 0.939 42 H 0.074 0.926 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.039 5.409 12.828 16.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.057 4.057 3 C -0.238 4.238 4 C -0.077 4.077 5 Cl -0.157 7.157 6 C -0.758 4.758 7 S 2.706 3.294 8 O -0.949 6.949 9 O -0.946 6.946 10 N -0.831 5.831 11 C -0.007 4.007 12 C -0.164 4.164 13 C 0.032 3.968 14 C -0.554 4.554 15 H 0.072 0.928 16 C -0.139 4.139 17 N -0.529 5.529 18 Si 0.718 3.282 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.204 1.204 22 C -0.164 4.164 23 C -0.004 4.004 24 H 0.096 0.904 25 H 0.096 0.904 26 H 0.089 0.911 27 H 0.090 0.910 28 H 0.096 0.904 29 H 0.097 0.903 30 H 0.116 0.884 31 H 0.117 0.883 32 H 0.155 0.845 33 H 0.154 0.846 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.056 0.944 37 H 0.122 0.878 38 H 0.047 0.953 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.079 0.921 42 H 0.093 0.907 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.460 6.310 12.748 16.550 hybrid contribution 1.197 -1.549 0.336 1.986 sum -7.263 4.761 13.084 15.704 Atomic orbital electron populations 1.22438 0.92479 1.04113 1.04669 1.20468 0.97202 0.96165 0.91898 1.22442 1.02779 0.93876 1.04656 1.24491 1.01749 0.97664 0.83840 1.98702 1.90556 1.81772 1.44622 1.30876 1.13410 1.14264 1.17295 1.04914 0.74512 0.74944 0.75073 1.93554 1.29225 1.86778 1.85341 1.93565 1.78243 1.37518 1.85252 1.57589 1.30935 1.47129 1.47430 1.21822 0.81327 0.98996 0.98577 1.22119 1.00838 0.93489 0.99936 1.18585 0.89895 0.93914 0.94424 1.21173 1.01590 0.96544 1.36063 0.92798 1.24959 0.97856 0.95915 0.95184 1.69826 1.20211 1.25644 1.37182 0.86693 0.79837 0.83529 0.78115 1.20326 1.21306 1.20407 1.22036 0.98393 0.95041 1.00938 1.21535 0.93434 0.86362 0.99053 0.90353 0.90408 0.91133 0.91046 0.90404 0.90349 0.88397 0.88335 0.84458 0.84632 0.91488 0.90918 0.94444 0.87822 0.95323 0.92857 0.93111 0.92079 0.90724 0.91417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.90 7.79 37.16 0.29 -1.61 16 2 C -0.06 -0.57 0.58 -154.51 -0.09 -0.66 16 3 C -0.18 -1.95 7.79 37.16 0.29 -1.66 16 4 C -0.01 -0.12 5.60 37.16 0.21 0.09 16 5 Cl -0.18 -1.76 26.53 -51.86 -1.38 -3.14 16 6 C -0.63 -6.94 5.18 37.16 0.19 -6.75 16 7 S 2.61 38.19 4.45 -107.50 -0.48 37.71 16 8 O -0.96 -15.50 14.34 -57.54 -0.83 -16.33 16 9 O -0.96 -15.95 14.34 -57.54 -0.82 -16.78 16 10 N -0.99 -16.06 3.21 -113.27 -0.36 -16.42 16 11 C 0.12 2.08 6.34 -3.49 -0.02 2.06 16 12 C -0.12 -2.60 5.17 -26.39 -0.14 -2.74 16 13 C 0.05 1.13 2.06 -91.73 -0.19 0.94 16 14 C -0.52 -13.12 8.56 -34.44 -0.29 -13.42 16 15 H 0.05 1.36 7.74 -52.48 -0.41 0.95 16 16 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 17 N -0.89 -23.87 11.31 55.43 0.63 -23.24 16 18 Si 0.89 20.26 29.54 -169.99 -5.02 15.23 16 19 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 20 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 22 C -0.13 -2.28 5.30 -26.61 -0.14 -2.42 16 23 C 0.12 1.95 6.31 -3.71 -0.02 1.92 16 24 H 0.08 0.75 7.06 -51.93 -0.37 0.38 16 25 H 0.08 0.93 5.46 -51.93 -0.28 0.65 16 26 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.08 0.95 5.46 -51.93 -0.28 0.67 16 29 H 0.08 0.76 7.06 -51.93 -0.37 0.40 16 30 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.14 1.38 8.14 -51.92 -0.42 0.95 16 33 H 0.14 1.29 8.14 -51.92 -0.42 0.87 16 34 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 35 H 0.07 1.18 7.09 -51.93 -0.37 0.81 16 36 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.10 2.47 6.03 -51.92 -0.31 2.15 16 38 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 40 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.07 1.05 7.10 -51.93 -0.37 0.68 16 43 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 350.04 15.07 5.28 5.28 Total: -1.00 -29.04 350.04 -9.96 -39.00 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -6.97 Total: 1.40 kcal Atomic # 6 Polarization: -22.71 SS G_CDS: -0.01 Total: -22.72 kcal Atomic # 7 Polarization: -39.93 SS G_CDS: 0.26 Total: -39.66 kcal Atomic # 8 Polarization: -31.45 SS G_CDS: -1.65 Total: -33.11 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.23 kcal Atomic # 16 Polarization: 38.19 SS G_CDS: -0.48 Total: 37.71 kcal Atomic # 17 Polarization: -1.76 SS G_CDS: -1.38 Total: -3.14 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -29.04 -9.96 -39.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867077998.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.023 kcal (2) G-P(sol) polarization free energy of solvation -29.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds