Wall clock time and date at job start Tue Mar 31 2020 14:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00122 * 2 1 3 5 5 Cl 1.80297 * 109.46708 * 299.99786 * 4 2 1 6 6 C 1.52999 * 109.47317 * 239.99633 * 2 1 3 7 7 S 1.81409 * 109.46814 * 60.00042 * 6 2 1 8 8 O 1.42096 * 110.54119 * 291.62426 * 7 6 2 9 9 O 1.42097 * 110.54031 * 68.37593 * 7 6 2 10 10 N 1.65601 * 104.44942 * 180.02562 * 7 6 2 11 11 C 1.46929 * 120.62878 * 269.72474 * 10 7 6 12 12 C 1.53617 * 108.54404 * 126.36816 * 11 10 7 13 13 C 1.53039 * 109.24375 * 54.85416 * 12 11 10 14 14 C 1.50702 * 109.44863 * 178.49599 * 13 12 11 15 15 H 1.08003 * 119.99919 * 120.06725 * 14 13 12 16 16 C 1.37881 * 120.00326 * 300.06000 * 14 13 12 17 17 N 1.31512 * 119.99511 * 359.97438 * 16 14 13 18 18 Si 1.86791 * 120.00179 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47236 * 60.00101 * 18 16 14 20 20 H 1.48498 * 109.47230 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47417 * 299.99951 * 18 16 14 22 22 C 1.53037 * 109.53971 * 298.50952 * 13 12 11 23 23 C 1.46925 * 120.63327 * 89.99776 * 10 7 6 24 24 H 1.09001 * 109.46832 * 300.00199 * 1 2 3 25 25 H 1.09002 * 109.47153 * 60.00008 * 1 2 3 26 26 H 1.08996 * 109.46952 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47140 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.47230 * 299.99295 * 3 2 1 29 29 H 1.09001 * 109.47375 * 60.00133 * 3 2 1 30 30 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 31 31 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 32 32 H 1.09000 * 109.47486 * 180.02562 * 6 2 1 33 33 H 1.09001 * 109.47362 * 300.00732 * 6 2 1 34 34 H 1.09002 * 109.58224 * 246.20143 * 11 10 7 35 35 H 1.08998 * 109.58544 * 6.62364 * 11 10 7 36 36 H 1.09002 * 109.63701 * 294.86117 * 12 11 10 37 37 H 1.09009 * 109.43167 * 174.72173 * 12 11 10 38 38 H 1.08997 * 109.46006 * 58.53002 * 13 12 11 39 39 H 0.97000 * 120.00020 * 179.97438 * 17 16 14 40 40 H 1.09007 * 109.49424 * 301.41666 * 22 13 12 41 41 H 1.08995 * 109.49947 * 181.31580 * 22 13 12 42 42 H 1.09004 * 109.58433 * 353.37553 * 23 10 7 43 43 H 1.09001 * 109.58342 * 113.65153 * 23 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 17 1.4390 0.1287 2.7213 6 6 2.0400 -0.7213 -1.2492 7 16 1.4353 0.1338 -2.7304 8 8 0.0280 -0.0184 -2.8544 9 8 2.0479 1.4099 -2.8544 10 7 2.0530 -0.7409 -3.9936 11 6 3.3620 -0.4029 -4.5689 12 6 4.2370 -1.6655 -4.5673 13 6 3.5009 -2.7903 -5.2987 14 6 4.3707 -4.0206 -5.3321 15 1 4.0268 -4.9375 -4.8767 16 6 5.6054 -3.9756 -5.9441 17 7 6.0238 -2.8592 -6.4992 18 14 6.6831 -5.5007 -5.9861 19 1 5.9697 -6.5916 -6.6975 20 1 7.9498 -5.1923 -6.6972 21 1 6.9866 -5.9309 -4.5975 22 6 2.1954 -3.1086 -4.5664 23 6 1.2997 -1.8659 -4.5643 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 3.1300 1.4424 -0.0005 28 1 1.6768 1.9563 -0.8901 29 1 1.6767 1.9563 0.8900 30 1 1.6767 -1.7489 1.2492 31 1 3.1300 -0.7217 1.2490 32 1 3.1300 -0.7217 -1.2490 33 1 1.6766 -1.7490 -1.2492 34 1 3.2311 -0.0470 -5.5908 35 1 3.8361 0.3727 -3.9675 36 1 4.4385 -1.9703 -3.5403 37 1 5.1779 -1.4554 -5.0761 38 1 3.2779 -2.4755 -6.3182 39 1 6.8926 -2.8274 -6.9295 40 1 2.4161 -3.3997 -3.5393 41 1 1.6831 -3.9255 -5.0745 42 1 0.4127 -2.0558 -3.9599 43 1 1.0018 -1.6258 -5.5850 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867077998.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:57 Heat of formation + Delta-G solvation = -117.712487 kcal Electronic energy + Delta-G solvation = -24862.110324 eV Core-core repulsion = 21286.805604 eV Total energy + Delta-G solvation = -3575.304720 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 323.111 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.29148 -38.97195 -38.26853 -37.04141 -36.43530 -35.24673 -32.59841 -31.64010 -28.96737 -28.35633 -28.15598 -27.55875 -24.13564 -23.89730 -21.21397 -20.34690 -19.70480 -18.89529 -18.19246 -17.32013 -17.19466 -16.54035 -16.17565 -15.95471 -15.41083 -15.19533 -14.87845 -14.79806 -14.57100 -14.45600 -14.31123 -14.04101 -13.75943 -13.66426 -13.34694 -12.97134 -12.90717 -12.78248 -12.70366 -12.48298 -12.44376 -12.39293 -12.35514 -12.06151 -12.05191 -11.86137 -11.74471 -11.37093 -11.22574 -11.16592 -10.89278 -10.75215 -10.34651 -9.78302 -8.02955 -6.16544 -0.76040 1.32107 1.45038 1.46504 1.52918 1.65614 2.47079 2.82693 3.10733 3.23905 3.35987 3.50055 3.51663 3.78575 4.02849 4.10617 4.31250 4.42791 4.49604 4.51501 4.52639 4.57345 4.64726 4.66766 4.76289 4.83162 4.85069 4.85553 4.95695 4.97809 5.15429 5.25117 5.26544 5.35485 5.39474 5.59148 5.67650 5.74786 6.06600 6.23960 6.44388 6.95973 7.51753 9.00013 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.017531 B = 0.003671 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.826241 B = 7625.079238 C = 8388.157477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.055 4.055 3 C -0.186 4.186 4 C -0.012 4.012 5 Cl -0.192 7.192 6 C -0.612 4.612 7 S 2.612 3.388 8 O -0.977 6.977 9 O -0.982 6.982 10 N -0.997 5.997 11 C 0.126 3.874 12 C -0.116 4.116 13 C 0.044 3.956 14 C -0.530 4.530 15 H 0.054 0.946 16 C 0.015 3.985 17 N -0.915 5.915 18 Si 0.947 3.053 19 H -0.276 1.276 20 H -0.289 1.289 21 H -0.271 1.271 22 C -0.117 4.117 23 C 0.122 3.878 24 H 0.084 0.916 25 H 0.059 0.941 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.059 0.941 29 H 0.085 0.915 30 H 0.116 0.884 31 H 0.113 0.887 32 H 0.154 0.846 33 H 0.161 0.839 34 H 0.054 0.946 35 H 0.088 0.912 36 H 0.045 0.955 37 H 0.071 0.929 38 H -0.007 1.007 39 H 0.259 0.741 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.102 0.898 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.344 4.312 14.994 17.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.057 4.057 3 C -0.244 4.244 4 C -0.076 4.076 5 Cl -0.166 7.166 6 C -0.744 4.744 7 S 2.710 3.290 8 O -0.968 6.968 9 O -0.973 6.973 10 N -0.835 5.835 11 C 0.001 3.999 12 C -0.155 4.155 13 C 0.025 3.975 14 C -0.569 4.569 15 H 0.072 0.928 16 C -0.184 4.184 17 N -0.555 5.555 18 Si 0.773 3.227 19 H -0.201 1.201 20 H -0.215 1.215 21 H -0.196 1.196 22 C -0.156 4.156 23 C -0.003 4.003 24 H 0.103 0.897 25 H 0.078 0.922 26 H 0.101 0.899 27 H 0.097 0.903 28 H 0.078 0.922 29 H 0.104 0.896 30 H 0.135 0.865 31 H 0.131 0.869 32 H 0.173 0.827 33 H 0.179 0.821 34 H 0.072 0.928 35 H 0.107 0.893 36 H 0.064 0.936 37 H 0.089 0.911 38 H 0.011 0.989 39 H 0.068 0.932 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.120 0.880 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.794 5.227 14.876 18.054 hybrid contribution 1.259 -1.191 -0.303 1.759 sum -7.535 4.036 14.573 16.895 Atomic orbital electron populations 1.22493 0.92754 1.04821 1.04150 1.20484 0.97035 0.95863 0.92331 1.22501 1.03336 0.94384 1.04142 1.24567 1.02638 0.98012 0.82349 1.98709 1.90705 1.82076 1.45061 1.30677 1.14440 1.14825 1.14450 1.04830 0.73952 0.74531 0.75719 1.93533 1.30298 1.86914 1.86022 1.93536 1.78430 1.39302 1.86017 1.57566 1.30001 1.47166 1.48746 1.21560 0.81917 0.97790 0.98601 1.21897 0.99742 0.94361 0.99514 1.18585 0.91952 0.93497 0.93449 1.21587 1.02060 0.97571 1.35634 0.92773 1.25659 0.99231 0.98262 0.95201 1.69976 1.20355 1.27216 1.37957 0.85793 0.78104 0.80513 0.78273 1.20107 1.21512 1.19594 1.21908 0.96496 0.96198 1.00995 1.21530 0.93768 0.85362 0.99617 0.89680 0.92187 0.89850 0.90279 0.92234 0.89603 0.86541 0.86902 0.82744 0.82117 0.92801 0.89327 0.93581 0.91105 0.98867 0.93171 0.91682 0.91808 0.88023 0.92017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.45 7.79 71.98 0.56 -2.89 16 2 C -0.06 -0.97 0.58 -52.18 -0.03 -1.00 16 3 C -0.19 -3.67 7.79 71.98 0.56 -3.11 16 4 C -0.01 -0.16 5.60 71.98 0.40 0.24 16 5 Cl -0.19 -3.19 26.53 -2.72 -0.07 -3.26 16 6 C -0.61 -11.37 5.18 71.98 0.37 -10.99 16 7 S 2.61 72.09 4.45 -56.49 -0.25 71.83 16 8 O -0.98 -30.17 14.34 -127.65 -1.83 -32.00 16 9 O -0.98 -32.10 14.34 -127.65 -1.83 -33.93 16 10 N -1.00 -31.04 3.21 -512.29 -1.65 -32.69 16 11 C 0.13 4.47 6.34 86.50 0.55 5.02 16 12 C -0.12 -4.84 5.17 30.81 0.16 -4.68 16 13 C 0.04 1.98 2.06 -11.51 -0.02 1.96 16 14 C -0.53 -26.98 8.56 25.60 0.22 -26.76 16 15 H 0.05 2.68 7.74 -2.91 -0.02 2.66 16 16 C 0.02 0.79 5.30 84.66 0.45 1.24 16 17 N -0.92 -50.14 11.31 21.45 0.24 -49.90 16 18 Si 0.95 41.42 29.54 68.60 2.03 43.45 16 19 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 20 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 21 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 22 C -0.12 -4.11 5.30 30.67 0.16 -3.95 16 23 C 0.12 3.75 6.31 86.36 0.54 4.29 16 24 H 0.08 1.45 7.06 -2.39 -0.02 1.43 16 25 H 0.06 1.35 5.46 -2.39 -0.01 1.34 16 26 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.06 1.40 5.46 -2.39 -0.01 1.39 16 29 H 0.09 1.53 7.06 -2.39 -0.02 1.51 16 30 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.15 2.47 8.14 -2.39 -0.02 2.45 16 33 H 0.16 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.05 2.01 8.14 -2.39 -0.02 2.00 16 35 H 0.09 2.83 7.09 -2.39 -0.02 2.81 16 36 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.07 3.46 6.03 -2.38 -0.01 3.44 16 38 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 39 H 0.26 13.70 8.31 -92.71 -0.77 12.93 16 40 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16 41 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 42 H 0.10 2.59 7.10 -2.38 -0.02 2.57 16 43 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -63.04 350.04 1.55 -61.49 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: 0.99 Total: 15.62 kcal Atomic # 6 Polarization: -44.55 SS G_CDS: 3.93 Total: -40.62 kcal Atomic # 7 Polarization: -81.18 SS G_CDS: -1.40 Total: -82.58 kcal Atomic # 8 Polarization: -62.26 SS G_CDS: -3.66 Total: -65.93 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.45 kcal Atomic # 16 Polarization: 72.09 SS G_CDS: -0.25 Total: 71.83 kcal Atomic # 17 Polarization: -3.19 SS G_CDS: -0.07 Total: -3.26 kcal Total: -63.04 1.55 -61.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867077998.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.226 kcal (2) G-P(sol) polarization free energy of solvation -63.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds