Wall clock time and date at job start Tue Mar 31 2020 14:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46502 * 109.46555 * 171.63984 * 3 2 1 5 5 C 1.36940 * 119.99978 * 273.01627 * 4 3 2 6 6 H 1.08004 * 119.99726 * 187.48495 * 5 4 3 7 7 C 1.38812 * 119.99835 * 7.48161 * 5 4 3 8 8 N 1.31616 * 120.00088 * 27.07234 * 7 5 4 9 9 Si 1.86809 * 119.99754 * 207.06515 * 7 5 4 10 10 H 1.48500 * 109.47168 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.46717 * 120.00517 * 9 7 5 12 12 H 1.48492 * 109.46982 * 240.00278 * 9 7 5 13 13 S 1.65594 * 119.99861 * 93.02268 * 4 3 2 14 14 O 1.42104 * 106.40362 * 336.45189 * 13 4 3 15 15 O 1.42105 * 106.40430 * 203.53439 * 13 4 3 16 16 C 1.76202 * 107.22260 * 89.99743 * 13 4 3 17 17 C 1.39871 * 126.03452 * 270.00433 * 16 13 4 18 18 N 1.30838 * 108.19768 * 179.97438 * 17 16 13 19 19 N 1.40087 * 108.20835 * 359.97438 * 18 17 16 20 20 C 1.46499 * 126.03886 * 180.26229 * 19 18 17 21 21 C 1.54268 * 110.03445 * 211.86117 * 20 19 18 22 22 C 1.54891 * 104.19517 * 217.10654 * 21 20 19 23 23 C 1.54884 * 102.74895 * 37.94192 * 22 21 20 24 24 C 1.53876 * 110.02941 * 94.69340 * 20 19 18 25 25 C 1.34948 * 107.92278 * 0.02562 * 19 18 17 26 26 H 4.40636 * 5.51496 * 180.02562 * 4 1 2 27 27 H 1.08996 * 109.46930 * 51.64551 * 3 2 1 28 28 H 1.08991 * 109.47490 * 291.64053 * 3 2 1 29 29 H 0.97002 * 119.99738 * 179.97438 * 8 7 5 30 30 H 1.07996 * 125.90454 * 359.96868 * 17 16 13 31 31 H 1.09007 * 110.01897 * 333.30489 * 20 19 18 32 32 H 1.08998 * 110.48543 * 335.78474 * 21 20 19 33 33 H 1.08997 * 110.48659 * 98.42518 * 21 20 19 34 34 H 1.08997 * 110.75451 * 279.62480 * 22 21 20 35 35 H 1.09005 * 110.75222 * 156.25469 * 22 21 20 36 36 H 1.08994 * 110.49001 * 203.37837 * 23 22 21 37 37 H 1.09000 * 110.60119 * 80.79013 * 23 22 21 38 38 H 1.09005 * 110.03259 * 238.56555 * 24 20 19 39 39 H 1.08995 * 110.03031 * 359.97438 * 24 20 19 40 40 H 1.07994 * 126.12341 * 179.97438 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1336 1.3675 -0.2008 5 6 3.3027 1.8546 -1.4694 6 1 3.7744 2.8144 -1.6209 7 6 2.8680 1.1149 -2.5606 8 7 1.8704 0.2671 -2.4256 9 14 3.6987 1.3231 -4.2208 10 1 4.7850 2.3293 -4.1081 11 1 4.2714 0.0233 -4.6541 12 1 2.7003 1.7817 -5.2198 13 16 3.4804 2.3232 1.1062 14 8 2.7224 1.8083 2.1923 15 8 3.3811 3.6680 0.6577 16 6 5.1745 2.0580 1.5117 17 6 5.6676 1.0925 2.3954 18 7 6.9707 1.2028 2.4356 19 7 7.3486 2.2432 1.5769 20 6 8.7184 2.6956 1.3217 21 6 8.7291 4.2105 1.0308 22 6 9.8117 4.3795 -0.0640 23 6 9.6074 3.1212 -0.9438 24 6 9.2768 2.0029 0.0662 25 6 6.2282 2.7517 1.0225 26 1 -1.0502 -0.0004 0.0002 27 1 3.0096 -0.6369 -0.8059 28 1 3.0096 -0.3781 0.9551 29 1 1.5663 -0.2495 -3.1882 30 1 5.0752 0.3792 2.9491 31 1 9.3505 2.4753 2.1820 32 1 7.7570 4.5345 0.6591 33 1 9.0016 4.7690 1.9262 34 1 10.8087 4.3852 0.3764 35 1 9.6382 5.2873 -0.6419 36 1 10.5209 2.8847 -1.4893 37 1 8.7781 3.2676 -1.6357 38 1 10.1805 1.4473 0.3170 39 1 8.5288 1.3299 -0.3528 40 1 6.1812 3.5664 0.3152 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867226842.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:23 Heat of formation + Delta-G solvation = 75.858862 kcal Electronic energy + Delta-G solvation = -25747.755427 eV Core-core repulsion = 22079.737097 eV Total energy + Delta-G solvation = -3668.018330 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.109 amu Computer time = 2.13 seconds Orbital eigenvalues (eV) -41.19858 -38.12053 -36.21398 -36.00841 -34.77528 -32.22486 -31.66014 -30.89116 -30.18074 -29.06175 -27.58263 -26.34754 -23.69071 -22.56263 -21.59500 -20.74346 -19.71501 -18.57705 -17.95070 -17.70879 -16.69318 -16.21693 -16.19549 -15.59662 -14.66142 -14.57747 -14.45945 -14.27040 -14.14402 -13.72459 -13.38344 -13.13639 -12.76084 -12.35594 -12.21521 -11.92381 -11.63107 -11.49199 -11.46186 -11.39487 -11.24092 -11.11461 -10.98473 -10.91336 -10.86110 -10.83364 -10.42047 -10.17020 -10.09526 -9.50678 -9.32878 -9.04924 -8.80344 -8.62998 -8.04742 -6.15134 -3.73074 1.46202 1.88969 2.49433 2.66592 3.21802 3.31571 3.33772 3.96218 4.05375 4.20153 4.27367 4.42955 4.52876 4.65746 4.75167 4.82227 4.88892 4.96007 5.06085 5.09266 5.13811 5.18377 5.28400 5.40084 5.46285 5.58485 5.70747 5.75728 5.76737 5.84357 5.90802 5.99542 6.06477 6.26120 6.67118 6.85130 7.03697 7.13578 7.38361 7.65088 7.69369 8.44341 9.01635 9.15706 9.37610 10.83298 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.013025 B = 0.005296 C = 0.004228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2149.276270 B = 5285.307441 C = 6620.646805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.271 4.271 2 C -0.095 4.095 3 C 0.256 3.744 4 N -0.847 5.847 5 C -0.329 4.329 6 H 0.108 0.892 7 C 0.046 3.954 8 N -0.854 5.854 9 Si 0.897 3.103 10 H -0.271 1.271 11 H -0.283 1.283 12 H -0.285 1.285 13 S 2.699 3.301 14 O -0.979 6.979 15 O -0.972 6.972 16 C -0.804 4.804 17 C 0.127 3.873 18 N -0.304 5.304 19 N -0.362 5.362 20 C 0.152 3.848 21 C -0.141 4.141 22 C -0.120 4.120 23 C -0.127 4.127 24 C -0.138 4.138 25 C 0.175 3.825 26 H 0.196 0.804 27 H 0.103 0.897 28 H 0.061 0.939 29 H 0.264 0.736 30 H 0.193 0.807 31 H 0.105 0.895 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.355 3.010 4.007 15.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 C -0.098 4.098 3 C 0.130 3.870 4 N -0.678 5.678 5 C -0.458 4.458 6 H 0.125 0.875 7 C -0.160 4.160 8 N -0.492 5.492 9 Si 0.724 3.276 10 H -0.196 1.196 11 H -0.209 1.209 12 H -0.211 1.211 13 S 2.787 3.213 14 O -0.969 6.969 15 O -0.962 6.962 16 C -0.898 4.898 17 C -0.062 4.062 18 N -0.123 5.123 19 N -0.141 5.141 20 C 0.050 3.950 21 C -0.180 4.180 22 C -0.158 4.158 23 C -0.165 4.165 24 C -0.177 4.177 25 C 0.024 3.976 26 H 0.213 0.787 27 H 0.121 0.879 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.210 0.790 31 H 0.123 0.877 32 H 0.102 0.898 33 H 0.099 0.901 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 15.062 3.034 4.873 16.119 hybrid contribution 0.037 -0.057 -1.547 1.549 sum 15.099 2.977 3.326 15.745 Atomic orbital electron populations 1.24142 0.95278 1.01974 1.07674 1.23023 0.94262 0.98273 0.94218 1.17770 0.84640 0.85032 0.99527 1.52998 1.73340 1.23038 1.18451 1.19131 1.40777 1.05243 0.80679 0.87455 1.24951 0.95285 0.97294 0.98502 1.70235 1.20843 1.27032 1.31097 0.86375 0.79910 0.77967 0.83392 1.19551 1.20915 1.21125 1.01674 0.73784 0.73539 0.72347 1.93486 1.68533 1.80987 1.53883 1.93458 1.86593 1.34502 1.81646 1.32488 1.27001 1.12615 1.17734 1.23473 0.91308 0.96232 0.95150 1.77290 1.14543 1.06756 1.13679 1.49318 1.06036 1.25814 1.32893 1.22095 0.78923 0.94419 0.99552 1.22894 1.01431 0.93255 1.00394 1.22465 0.98364 0.98649 0.96347 1.22409 1.02262 0.94197 0.97631 1.22636 1.01876 0.98686 0.94478 1.22264 0.84760 0.96256 0.94364 0.78696 0.87894 0.92109 0.92507 0.79005 0.87678 0.89781 0.90066 0.90929 0.90482 0.90959 0.90755 0.90325 0.90276 0.79774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 60. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -6.22 19.25 29.55 0.57 -5.65 16 2 C -0.10 -2.32 11.20 -37.12 -0.42 -2.74 16 3 C 0.26 5.88 5.10 -6.83 -0.03 5.84 16 4 N -0.85 -20.18 2.88 -62.77 -0.18 -20.36 16 5 C -0.33 -8.35 9.36 -15.06 -0.14 -8.49 16 6 H 0.11 2.68 7.43 -52.48 -0.39 2.29 16 7 C 0.05 1.16 4.86 -17.43 -0.08 1.07 16 8 N -0.85 -22.38 9.10 55.49 0.50 -21.88 16 9 Si 0.90 19.63 29.63 -169.99 -5.04 14.59 16 10 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 11 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 12 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 13 S 2.70 59.46 5.75 -107.50 -0.62 58.84 16 14 O -0.98 -22.81 16.88 -57.17 -0.97 -23.77 16 15 O -0.97 -23.44 16.73 -57.17 -0.96 -24.40 16 16 C -0.80 -14.89 6.17 -40.01 -0.25 -15.14 16 17 C 0.13 2.18 11.82 -17.36 -0.21 1.97 16 18 N -0.30 -5.07 12.58 30.62 0.39 -4.69 16 19 N -0.36 -5.39 3.45 -53.78 -0.19 -5.58 16 20 C 0.15 1.65 4.01 -66.81 -0.27 1.39 16 21 C -0.14 -1.26 6.37 -25.07 -0.16 -1.42 16 22 C -0.12 -0.87 6.91 -24.74 -0.17 -1.04 16 23 C -0.13 -1.07 6.83 -25.07 -0.17 -1.24 16 24 C -0.14 -1.38 6.60 -25.61 -0.17 -1.55 16 25 C 0.18 2.87 10.18 -17.22 -0.18 2.70 16 26 H 0.20 3.69 7.80 -54.08 -0.42 3.27 16 27 H 0.10 2.41 6.51 -51.93 -0.34 2.08 16 28 H 0.06 1.20 7.68 -51.93 -0.40 0.80 16 29 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 30 H 0.19 2.81 8.06 -52.49 -0.42 2.38 16 31 H 0.11 1.05 8.14 -51.93 -0.42 0.62 16 32 H 0.08 0.83 5.93 -51.93 -0.31 0.52 16 33 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.08 0.98 7.92 -51.93 -0.41 0.57 16 40 H 0.19 2.65 6.87 -52.49 -0.36 2.29 16 LS Contribution 350.45 15.07 5.28 5.28 Total: -1.00 -32.70 350.45 -8.59 -41.30 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -5.15 Total: 4.96 kcal Atomic # 6 Polarization: -22.62 SS G_CDS: -1.67 Total: -24.30 kcal Atomic # 7 Polarization: -53.03 SS G_CDS: 0.52 Total: -52.50 kcal Atomic # 8 Polarization: -46.25 SS G_CDS: -1.92 Total: -48.17 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.04 Total: 14.59 kcal Atomic # 16 Polarization: 59.46 SS G_CDS: -0.62 Total: 58.84 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.70 -8.59 -41.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867226842.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.154 kcal (2) G-P(sol) polarization free energy of solvation -32.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.13 seconds