Wall clock time and date at job start Tue Mar 31 2020 14:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46502 * 109.46555 * 171.63984 * 3 2 1 5 5 C 1.36940 * 119.99978 * 273.01627 * 4 3 2 6 6 H 1.08004 * 119.99726 * 187.48495 * 5 4 3 7 7 C 1.38812 * 119.99835 * 7.48161 * 5 4 3 8 8 N 1.31616 * 120.00088 * 27.07234 * 7 5 4 9 9 Si 1.86809 * 119.99754 * 207.06515 * 7 5 4 10 10 H 1.48500 * 109.47168 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.46717 * 120.00517 * 9 7 5 12 12 H 1.48492 * 109.46982 * 240.00278 * 9 7 5 13 13 S 1.65594 * 119.99861 * 93.02268 * 4 3 2 14 14 O 1.42104 * 106.40362 * 336.45189 * 13 4 3 15 15 O 1.42105 * 106.40430 * 203.53439 * 13 4 3 16 16 C 1.76202 * 107.22260 * 89.99743 * 13 4 3 17 17 C 1.39871 * 126.03452 * 270.00433 * 16 13 4 18 18 N 1.30838 * 108.19768 * 179.97438 * 17 16 13 19 19 N 1.40087 * 108.20835 * 359.97438 * 18 17 16 20 20 C 1.46499 * 126.03886 * 180.26229 * 19 18 17 21 21 C 1.54268 * 110.03445 * 211.86117 * 20 19 18 22 22 C 1.54891 * 104.19517 * 217.10654 * 21 20 19 23 23 C 1.54884 * 102.74895 * 37.94192 * 22 21 20 24 24 C 1.53876 * 110.02941 * 94.69340 * 20 19 18 25 25 C 1.34948 * 107.92278 * 0.02562 * 19 18 17 26 26 H 4.40636 * 5.51496 * 180.02562 * 4 1 2 27 27 H 1.08996 * 109.46930 * 51.64551 * 3 2 1 28 28 H 1.08991 * 109.47490 * 291.64053 * 3 2 1 29 29 H 0.97002 * 119.99738 * 179.97438 * 8 7 5 30 30 H 1.07996 * 125.90454 * 359.96868 * 17 16 13 31 31 H 1.09007 * 110.01897 * 333.30489 * 20 19 18 32 32 H 1.08998 * 110.48543 * 335.78474 * 21 20 19 33 33 H 1.08997 * 110.48659 * 98.42518 * 21 20 19 34 34 H 1.08997 * 110.75451 * 279.62480 * 22 21 20 35 35 H 1.09005 * 110.75222 * 156.25469 * 22 21 20 36 36 H 1.08994 * 110.49001 * 203.37837 * 23 22 21 37 37 H 1.09000 * 110.60119 * 80.79013 * 23 22 21 38 38 H 1.09005 * 110.03259 * 238.56555 * 24 20 19 39 39 H 1.08995 * 110.03031 * 359.97438 * 24 20 19 40 40 H 1.07994 * 126.12341 * 179.97438 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1336 1.3675 -0.2008 5 6 3.3027 1.8546 -1.4694 6 1 3.7744 2.8144 -1.6209 7 6 2.8680 1.1149 -2.5606 8 7 1.8704 0.2671 -2.4256 9 14 3.6987 1.3231 -4.2208 10 1 4.7850 2.3293 -4.1081 11 1 4.2714 0.0233 -4.6541 12 1 2.7003 1.7817 -5.2198 13 16 3.4804 2.3232 1.1062 14 8 2.7224 1.8083 2.1923 15 8 3.3811 3.6680 0.6577 16 6 5.1745 2.0580 1.5117 17 6 5.6676 1.0925 2.3954 18 7 6.9707 1.2028 2.4356 19 7 7.3486 2.2432 1.5769 20 6 8.7184 2.6956 1.3217 21 6 8.7291 4.2105 1.0308 22 6 9.8117 4.3795 -0.0640 23 6 9.6074 3.1212 -0.9438 24 6 9.2768 2.0029 0.0662 25 6 6.2282 2.7517 1.0225 26 1 -1.0502 -0.0004 0.0002 27 1 3.0096 -0.6369 -0.8059 28 1 3.0096 -0.3781 0.9551 29 1 1.5663 -0.2495 -3.1882 30 1 5.0752 0.3792 2.9491 31 1 9.3505 2.4753 2.1820 32 1 7.7570 4.5345 0.6591 33 1 9.0016 4.7690 1.9262 34 1 10.8087 4.3852 0.3764 35 1 9.6382 5.2873 -0.6419 36 1 10.5209 2.8847 -1.4893 37 1 8.7781 3.2676 -1.6357 38 1 10.1805 1.4473 0.3170 39 1 8.5288 1.3299 -0.3528 40 1 6.1812 3.5664 0.3152 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867226842.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:22 Heat of formation + Delta-G solvation = 54.955344 kcal Electronic energy + Delta-G solvation = -25748.661871 eV Core-core repulsion = 22079.737097 eV Total energy + Delta-G solvation = -3668.924775 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.109 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.45700 -38.94234 -38.04186 -37.81703 -36.62179 -33.51264 -33.30594 -32.72872 -31.51956 -29.79240 -28.53941 -28.16926 -25.55309 -23.72577 -22.82133 -21.54410 -20.76666 -20.25273 -19.62231 -19.24587 -18.37163 -17.98470 -17.01864 -16.91309 -16.39099 -16.14676 -15.71548 -15.66386 -15.23032 -15.06043 -14.85032 -14.52232 -14.13871 -13.98665 -13.45858 -13.11214 -13.09086 -12.96014 -12.87315 -12.71319 -12.68544 -12.63969 -12.23049 -12.16650 -12.07188 -11.90855 -11.81297 -11.72761 -11.53488 -11.27936 -10.87364 -10.59631 -10.44944 -10.19733 -9.91273 -8.02796 -5.67560 -0.24373 0.55503 1.24891 1.37057 1.47860 1.52369 1.62602 2.20223 2.46077 2.59376 2.90089 3.01594 3.17618 3.29417 3.45779 3.48706 3.72070 3.80392 3.92067 4.06972 4.17436 4.29701 4.35171 4.39348 4.49111 4.55638 4.58129 4.65946 4.80327 4.95941 5.02892 5.04616 5.15231 5.19937 5.34142 5.35841 5.38036 5.60334 5.76004 5.85647 6.38002 6.54955 7.14600 7.33774 7.47424 8.95083 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.013025 B = 0.005296 C = 0.004228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2149.276270 B = 5285.307441 C = 6620.646805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.272 4.272 2 C -0.136 4.136 3 C 0.256 3.744 4 N -0.865 5.865 5 C -0.344 4.344 6 H 0.105 0.895 7 C 0.002 3.998 8 N -0.883 5.883 9 Si 0.959 3.041 10 H -0.260 1.260 11 H -0.281 1.281 12 H -0.292 1.292 13 S 2.720 3.280 14 O -0.999 6.999 15 O -1.000 7.000 16 C -0.817 4.817 17 C 0.123 3.877 18 N -0.311 5.311 19 N -0.349 5.349 20 C 0.140 3.860 21 C -0.142 4.142 22 C -0.111 4.111 23 C -0.127 4.127 24 C -0.136 4.136 25 C 0.179 3.821 26 H 0.228 0.772 27 H 0.093 0.907 28 H 0.086 0.914 29 H 0.261 0.739 30 H 0.211 0.789 31 H 0.120 0.880 32 H 0.073 0.927 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.059 0.941 38 H 0.096 0.904 39 H 0.051 0.949 40 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.833 3.700 4.106 17.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 C -0.139 4.139 3 C 0.130 3.870 4 N -0.696 5.696 5 C -0.473 4.473 6 H 0.122 0.878 7 C -0.201 4.201 8 N -0.522 5.522 9 Si 0.784 3.216 10 H -0.184 1.184 11 H -0.207 1.207 12 H -0.218 1.218 13 S 2.813 3.187 14 O -0.989 6.989 15 O -0.991 6.991 16 C -0.917 4.917 17 C -0.066 4.066 18 N -0.130 5.130 19 N -0.127 5.127 20 C 0.040 3.960 21 C -0.180 4.180 22 C -0.149 4.149 23 C -0.165 4.165 24 C -0.174 4.174 25 C 0.025 3.975 26 H 0.244 0.756 27 H 0.111 0.889 28 H 0.104 0.896 29 H 0.071 0.929 30 H 0.228 0.772 31 H 0.138 0.862 32 H 0.091 0.909 33 H 0.114 0.886 34 H 0.111 0.889 35 H 0.104 0.896 36 H 0.107 0.893 37 H 0.078 0.922 38 H 0.115 0.885 39 H 0.070 0.930 40 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 17.521 3.728 4.949 18.584 hybrid contribution -0.642 -0.205 -1.444 1.593 sum 16.879 3.523 3.506 17.595 Atomic orbital electron populations 1.25042 0.96433 1.00892 1.06683 1.23732 0.95499 0.99396 0.95235 1.17871 0.84186 0.84589 1.00359 1.52970 1.75890 1.22796 1.17992 1.19305 1.40426 1.05993 0.81542 0.87783 1.25645 0.95569 0.97525 1.01332 1.70355 1.22103 1.28197 1.31592 0.85419 0.78864 0.78062 0.79230 1.18351 1.20656 1.21844 1.00371 0.74200 0.72461 0.71676 1.93453 1.69790 1.81066 1.54582 1.93416 1.87449 1.36149 1.82080 1.31673 1.24707 1.15121 1.20201 1.23802 0.91632 0.96209 0.94956 1.77262 1.14138 1.07386 1.14168 1.49650 1.07149 1.24533 1.31366 1.22614 0.76876 0.95927 1.00628 1.22959 1.01654 0.91677 1.01727 1.22465 0.98684 0.98261 0.95466 1.22421 1.02487 0.94242 0.97312 1.22633 1.01675 0.98861 0.94268 1.22514 0.84819 0.96146 0.94011 0.75568 0.88900 0.89630 0.92900 0.77231 0.86249 0.90878 0.88594 0.88944 0.89600 0.89305 0.92176 0.88543 0.93028 0.78122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -12.47 19.25 74.32 1.43 -11.04 16 2 C -0.14 -6.75 11.20 31.12 0.35 -6.40 16 3 C 0.26 11.95 5.10 84.57 0.43 12.38 16 4 N -0.87 -41.89 2.88 -352.52 -1.02 -42.91 16 5 C -0.34 -17.72 9.36 84.03 0.79 -16.93 16 6 H 0.10 5.27 7.43 -2.91 -0.02 5.25 16 7 C 0.00 0.11 4.86 84.86 0.41 0.52 16 8 N -0.88 -47.19 9.10 21.65 0.20 -46.99 16 9 Si 0.96 40.67 29.63 68.60 2.03 42.70 16 10 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16 11 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 12 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 13 S 2.72 120.83 5.75 -56.49 -0.32 120.51 16 14 O -1.00 -46.85 16.88 -128.00 -2.16 -49.01 16 15 O -1.00 -48.84 16.73 -128.00 -2.14 -50.98 16 16 C -0.82 -29.79 6.17 21.99 0.14 -29.65 16 17 C 0.12 4.07 11.82 85.24 1.01 5.08 16 18 N -0.31 -9.87 12.58 -57.02 -0.72 -10.59 16 19 N -0.35 -9.80 3.45 -324.05 -1.12 -10.92 16 20 C 0.14 2.69 4.01 45.72 0.18 2.87 16 21 C -0.14 -2.13 6.37 31.67 0.20 -1.93 16 22 C -0.11 -1.22 6.91 31.88 0.22 -1.00 16 23 C -0.13 -1.80 6.83 31.67 0.22 -1.59 16 24 C -0.14 -2.41 6.60 31.32 0.21 -2.20 16 25 C 0.18 5.68 10.18 83.54 0.85 6.53 16 26 H 0.23 8.35 7.80 -4.41 -0.03 8.31 16 27 H 0.09 4.49 6.51 -2.39 -0.02 4.48 16 28 H 0.09 3.43 7.68 -2.39 -0.02 3.41 16 29 H 0.26 13.41 8.31 -92.71 -0.77 12.64 16 30 H 0.21 5.91 8.06 -2.91 -0.02 5.89 16 31 H 0.12 2.00 8.14 -2.38 -0.02 1.98 16 32 H 0.07 1.28 5.93 -2.39 -0.01 1.27 16 33 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.09 0.85 8.14 -2.38 -0.02 0.83 16 36 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.10 1.36 8.14 -2.38 -0.02 1.34 16 39 H 0.05 1.22 7.92 -2.39 -0.02 1.20 16 40 H 0.20 5.58 6.87 -2.91 -0.02 5.56 16 Total: -1.00 -70.37 350.45 2.23 -68.14 By element: Atomic # 1 Polarization: 22.34 SS G_CDS: 1.05 Total: 23.39 kcal Atomic # 6 Polarization: -49.78 SS G_CDS: 6.43 Total: -43.35 kcal Atomic # 7 Polarization: -108.75 SS G_CDS: -2.65 Total: -111.40 kcal Atomic # 8 Polarization: -95.69 SS G_CDS: -4.30 Total: -99.99 kcal Atomic # 14 Polarization: 40.67 SS G_CDS: 2.03 Total: 42.70 kcal Atomic # 16 Polarization: 120.83 SS G_CDS: -0.32 Total: 120.51 kcal Total: -70.37 2.23 -68.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867226842.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.097 kcal (2) G-P(sol) polarization free energy of solvation -70.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds