Wall clock time and date at job start Tue Mar 31 2020 14:06:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52993 * 109.47342 * 2 1 4 4 C 1.53001 * 109.47463 * 239.99163 * 2 1 3 5 5 Cl 1.80305 * 109.46618 * 60.00317 * 4 2 1 6 6 C 1.53006 * 109.46914 * 119.99692 * 2 1 3 7 7 S 1.81399 * 109.46930 * 300.00087 * 6 2 1 8 8 O 1.42103 * 110.54488 * 68.37348 * 7 6 2 9 9 O 1.42102 * 110.54530 * 291.62500 * 7 6 2 10 10 N 1.65599 * 104.45167 * 179.97438 * 7 6 2 11 11 C 1.46993 * 120.61735 * 270.00374 * 10 7 6 12 12 C 1.53190 * 108.73955 * 126.40648 * 11 10 7 13 13 C 1.53033 * 109.33996 * 54.62262 * 12 11 10 14 14 C 1.53041 * 109.53890 * 298.61743 * 13 12 11 15 15 H 1.08999 * 109.49581 * 301.41457 * 14 13 12 16 16 C 1.50703 * 109.49661 * 181.35022 * 14 13 12 17 17 H 1.07998 * 119.99813 * 275.03122 * 16 14 13 18 18 C 1.37878 * 119.99866 * 95.03308 * 16 14 13 19 19 N 1.31515 * 119.99964 * 186.20936 * 18 16 14 20 20 Si 1.86804 * 119.99959 * 6.21294 * 18 16 14 21 21 H 1.48489 * 109.47441 * 84.76783 * 20 18 16 22 22 H 1.48507 * 109.46712 * 204.76946 * 20 18 16 23 23 H 1.48499 * 109.46916 * 324.76120 * 20 18 16 24 24 C 1.46925 * 120.62904 * 89.99826 * 10 7 6 25 25 H 1.08997 * 109.47621 * 300.00519 * 1 2 3 26 26 H 1.09006 * 109.47018 * 60.00573 * 1 2 3 27 27 H 1.09003 * 109.47517 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47600 * 179.97438 * 3 2 1 29 29 H 1.09006 * 109.46596 * 299.99685 * 3 2 1 30 30 H 1.09001 * 109.47672 * 59.99149 * 3 2 1 31 31 H 1.08998 * 109.47151 * 179.97438 * 4 2 1 32 32 H 1.09003 * 109.47246 * 300.00768 * 4 2 1 33 33 H 1.08996 * 109.47238 * 179.97438 * 6 2 1 34 34 H 1.09003 * 109.46969 * 59.99738 * 6 2 1 35 35 H 1.08997 * 109.63101 * 6.61408 * 11 10 7 36 36 H 1.09005 * 109.58259 * 246.16889 * 11 10 7 37 37 H 1.08997 * 109.49697 * 294.64856 * 12 11 10 38 38 H 1.09003 * 109.49686 * 174.59336 * 12 11 10 39 39 H 1.09005 * 109.46389 * 58.63964 * 13 12 11 40 40 H 1.09006 * 109.45900 * 178.60682 * 13 12 11 41 41 H 0.96995 * 119.99874 * 180.02562 * 19 18 16 42 42 H 1.09004 * 109.59183 * 113.82396 * 24 10 7 43 43 H 1.09003 * 109.70425 * 353.46935 * 24 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2491 5 17 1.4391 0.1285 -2.7214 6 6 2.0399 -0.7212 1.2493 7 16 1.4352 0.1340 2.7304 8 8 0.0278 -0.0181 2.8543 9 8 2.0478 1.4102 2.8544 10 7 2.0527 -0.7405 3.9937 11 6 1.2988 -1.8659 4.5645 12 6 2.1950 -3.1083 4.5662 13 6 3.5007 -2.7903 5.2983 14 6 4.2368 -1.6656 4.5668 15 1 4.4379 -1.9702 3.5397 16 6 5.5381 -1.3759 5.2695 17 1 5.5580 -0.7008 6.1123 18 6 6.7032 -1.9726 4.8365 19 7 7.8153 -1.8176 5.5212 20 14 6.7021 -3.0013 3.2772 21 1 6.8803 -2.1149 2.0993 22 1 7.8151 -3.9829 3.3310 23 1 5.4099 -3.7240 3.1619 24 6 3.3644 -0.4063 4.5651 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0277 0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9562 -0.8901 30 1 1.6766 1.9564 0.8899 31 1 3.1300 -0.7210 -1.2493 32 1 1.6766 -1.7491 -1.2491 33 1 3.1299 -0.7216 1.2492 34 1 1.6765 -1.7489 1.2494 35 1 0.4116 -2.0562 3.9605 36 1 1.0034 -1.6271 5.5862 37 1 2.4152 -3.3994 3.5392 38 1 1.6828 -3.9256 5.0740 39 1 3.2780 -2.4756 6.3179 40 1 4.1296 -3.6803 5.3223 41 1 8.6350 -2.2371 5.2163 42 1 3.2375 -0.0484 5.5869 43 1 3.8410 0.3676 3.9634 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867497140.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:00 Heat of formation + Delta-G solvation = -100.691087 kcal Electronic energy + Delta-G solvation = -25143.635844 eV Core-core repulsion = 21569.069227 eV Total energy + Delta-G solvation = -3574.566616 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 323.111 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -38.22067 -38.02023 -37.07603 -35.93521 -35.64410 -33.27508 -31.64165 -30.62343 -28.07852 -27.54283 -27.45028 -25.30695 -23.94329 -21.72552 -19.97600 -19.29302 -18.58581 -17.72213 -16.85132 -16.29035 -16.06604 -15.43881 -15.12939 -14.61485 -14.26443 -14.22145 -13.86686 -13.71753 -13.35951 -13.25912 -13.04779 -12.89687 -12.72064 -12.64274 -12.15430 -12.04792 -11.91823 -11.59351 -11.50600 -11.36817 -11.31676 -11.25405 -11.14786 -10.93902 -10.83136 -10.55003 -10.46187 -10.39418 -10.05932 -9.83690 -9.69891 -9.15432 -8.66396 -8.46567 -6.19293 -4.19103 0.33269 1.99284 2.79565 3.15677 3.23770 3.26506 3.85949 4.08309 4.18137 4.29467 4.30396 4.39234 4.79641 4.86325 4.97153 5.12329 5.14930 5.21373 5.30585 5.37055 5.47204 5.51276 5.61710 5.66336 5.70918 5.76665 5.89667 6.00606 6.03106 6.10228 6.16992 6.31740 6.36026 6.50001 6.65175 6.79347 6.93152 7.14700 7.29617 7.65371 8.39173 8.86688 9.43039 10.93879 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.013999 B = 0.004816 C = 0.004091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.644777 B = 5812.853044 C = 6842.666033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.056 4.056 3 C -0.181 4.181 4 C -0.015 4.015 5 Cl -0.182 7.182 6 C -0.634 4.634 7 S 2.611 3.389 8 O -0.960 6.960 9 O -0.948 6.948 10 N -0.998 5.998 11 C 0.125 3.875 12 C -0.141 4.141 13 C -0.109 4.109 14 C 0.004 3.996 15 H 0.032 0.968 16 C -0.515 4.515 17 H 0.077 0.923 18 C 0.075 3.925 19 N -0.895 5.895 20 Si 0.871 3.129 21 H -0.276 1.276 22 H -0.289 1.289 23 H -0.264 1.264 24 C 0.130 3.870 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.138 0.862 34 H 0.133 0.867 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.055 0.945 38 H 0.063 0.937 39 H 0.057 0.943 40 H 0.054 0.946 41 H 0.265 0.735 42 H 0.068 0.932 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.762 -0.308 -11.461 17.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.057 4.057 3 C -0.238 4.238 4 C -0.078 4.078 5 Cl -0.156 7.156 6 C -0.762 4.762 7 S 2.704 3.296 8 O -0.950 6.950 9 O -0.939 6.939 10 N -0.837 5.837 11 C 0.000 4.000 12 C -0.180 4.180 13 C -0.148 4.148 14 C -0.017 4.017 15 H 0.050 0.950 16 C -0.553 4.553 17 H 0.095 0.905 18 C -0.128 4.128 19 N -0.532 5.532 20 Si 0.699 3.301 21 H -0.202 1.202 22 H -0.215 1.215 23 H -0.189 1.189 24 C 0.006 3.994 25 H 0.096 0.904 26 H 0.097 0.903 27 H 0.088 0.912 28 H 0.091 0.909 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.117 0.883 32 H 0.115 0.885 33 H 0.157 0.843 34 H 0.152 0.848 35 H 0.097 0.903 36 H 0.089 0.911 37 H 0.074 0.926 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.087 0.913 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -14.140 0.482 -11.476 18.218 hybrid contribution 0.741 -1.346 -1.186 1.941 sum -13.399 -0.864 -12.662 18.456 Atomic orbital electron populations 1.22433 0.92459 1.04002 1.04719 1.20466 0.97167 0.96299 0.91786 1.22451 1.02987 0.93718 1.04692 1.24496 1.01841 0.97576 0.83909 1.98703 1.90535 1.81773 1.44541 1.30904 1.13634 1.14097 1.17542 1.05005 0.74462 0.75114 0.75029 1.93551 1.29242 1.86823 1.85386 1.93590 1.78070 1.37158 1.85047 1.57784 1.31225 1.46906 1.47739 1.21391 0.93257 0.85761 0.99620 1.22067 0.98250 0.96471 1.01185 1.21781 0.93667 1.00086 0.99219 1.19501 0.94541 0.91250 0.96368 0.95003 1.20905 0.89590 1.28507 1.16341 0.90506 1.25038 0.95515 0.95634 0.96598 1.69896 1.00224 1.44450 1.38647 0.86951 0.77884 0.80806 0.84495 1.20158 1.21474 1.18860 1.21835 0.79248 0.99246 0.99056 0.90399 0.90299 0.91233 0.90880 0.90301 0.90342 0.88291 0.88474 0.84322 0.84819 0.90256 0.91069 0.92582 0.91824 0.92464 0.92680 0.92507 0.91319 0.89796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.88 7.79 37.16 0.29 -1.59 16 2 C -0.06 -0.59 0.58 -154.51 -0.09 -0.68 16 3 C -0.18 -2.08 7.79 37.15 0.29 -1.79 16 4 C -0.01 -0.13 5.60 37.16 0.21 0.08 16 5 Cl -0.18 -1.81 26.53 -51.86 -1.38 -3.18 16 6 C -0.63 -7.22 5.18 37.16 0.19 -7.02 16 7 S 2.61 38.48 4.45 -107.50 -0.48 38.00 16 8 O -0.96 -15.09 14.34 -57.54 -0.83 -15.91 16 9 O -0.95 -16.47 14.35 -57.54 -0.83 -17.30 16 10 N -1.00 -15.72 3.22 -113.47 -0.37 -16.09 16 11 C 0.13 1.74 6.32 -3.67 -0.02 1.72 16 12 C -0.14 -2.03 6.08 -26.62 -0.16 -2.20 16 13 C -0.11 -2.03 5.15 -26.69 -0.14 -2.17 16 14 C 0.00 0.08 1.93 -91.65 -0.18 -0.10 16 15 H 0.03 0.66 5.24 -51.93 -0.27 0.39 16 16 C -0.51 -13.27 8.86 -34.44 -0.31 -13.58 16 17 H 0.08 2.16 8.06 -52.49 -0.42 1.74 16 18 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 19 N -0.89 -25.99 13.96 55.43 0.77 -25.22 16 20 Si 0.87 19.94 27.03 -169.99 -4.59 15.34 16 21 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 22 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.26 -5.64 6.77 56.52 0.38 -5.26 16 24 C 0.13 2.42 5.58 -3.71 -0.02 2.40 16 25 H 0.08 0.92 5.46 -51.93 -0.28 0.64 16 26 H 0.08 0.76 7.06 -51.93 -0.37 0.39 16 27 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.08 0.81 7.06 -51.93 -0.37 0.44 16 30 H 0.08 1.01 5.46 -51.93 -0.28 0.72 16 31 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.14 1.53 8.14 -51.93 -0.42 1.10 16 34 H 0.13 1.23 8.14 -51.92 -0.42 0.80 16 35 H 0.08 0.95 7.10 -51.93 -0.37 0.58 16 36 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 40 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 42 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 43 H 0.08 1.58 7.11 -51.93 -0.37 1.21 16 LS Contribution 349.76 15.07 5.27 5.27 Total: -1.00 -30.33 349.76 -9.41 -39.75 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -6.96 Total: 2.35 kcal Atomic # 6 Polarization: -22.98 SS G_CDS: -0.03 Total: -23.01 kcal Atomic # 7 Polarization: -41.71 SS G_CDS: 0.41 Total: -41.31 kcal Atomic # 8 Polarization: -31.56 SS G_CDS: -1.65 Total: -33.21 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -4.59 Total: 15.34 kcal Atomic # 16 Polarization: 38.48 SS G_CDS: -0.48 Total: 38.00 kcal Atomic # 17 Polarization: -1.81 SS G_CDS: -1.38 Total: -3.18 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.33 -9.41 -39.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867497140.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.944 kcal (2) G-P(sol) polarization free energy of solvation -30.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds