Wall clock time and date at job start Tue Mar 31 2020 14:06:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52993 * 109.47342 * 2 1 4 4 C 1.53001 * 109.47463 * 239.99163 * 2 1 3 5 5 Cl 1.80305 * 109.46618 * 60.00317 * 4 2 1 6 6 C 1.53006 * 109.46914 * 119.99692 * 2 1 3 7 7 S 1.81399 * 109.46930 * 300.00087 * 6 2 1 8 8 O 1.42103 * 110.54488 * 68.37348 * 7 6 2 9 9 O 1.42102 * 110.54530 * 291.62500 * 7 6 2 10 10 N 1.65599 * 104.45167 * 179.97438 * 7 6 2 11 11 C 1.46993 * 120.61735 * 270.00374 * 10 7 6 12 12 C 1.53190 * 108.73955 * 126.40648 * 11 10 7 13 13 C 1.53033 * 109.33996 * 54.62262 * 12 11 10 14 14 C 1.53041 * 109.53890 * 298.61743 * 13 12 11 15 15 H 1.08999 * 109.49581 * 301.41457 * 14 13 12 16 16 C 1.50703 * 109.49661 * 181.35022 * 14 13 12 17 17 H 1.07998 * 119.99813 * 275.03122 * 16 14 13 18 18 C 1.37878 * 119.99866 * 95.03308 * 16 14 13 19 19 N 1.31515 * 119.99964 * 186.20936 * 18 16 14 20 20 Si 1.86804 * 119.99959 * 6.21294 * 18 16 14 21 21 H 1.48489 * 109.47441 * 84.76783 * 20 18 16 22 22 H 1.48507 * 109.46712 * 204.76946 * 20 18 16 23 23 H 1.48499 * 109.46916 * 324.76120 * 20 18 16 24 24 C 1.46925 * 120.62904 * 89.99826 * 10 7 6 25 25 H 1.08997 * 109.47621 * 300.00519 * 1 2 3 26 26 H 1.09006 * 109.47018 * 60.00573 * 1 2 3 27 27 H 1.09003 * 109.47517 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47600 * 179.97438 * 3 2 1 29 29 H 1.09006 * 109.46596 * 299.99685 * 3 2 1 30 30 H 1.09001 * 109.47672 * 59.99149 * 3 2 1 31 31 H 1.08998 * 109.47151 * 179.97438 * 4 2 1 32 32 H 1.09003 * 109.47246 * 300.00768 * 4 2 1 33 33 H 1.08996 * 109.47238 * 179.97438 * 6 2 1 34 34 H 1.09003 * 109.46969 * 59.99738 * 6 2 1 35 35 H 1.08997 * 109.63101 * 6.61408 * 11 10 7 36 36 H 1.09005 * 109.58259 * 246.16889 * 11 10 7 37 37 H 1.08997 * 109.49697 * 294.64856 * 12 11 10 38 38 H 1.09003 * 109.49686 * 174.59336 * 12 11 10 39 39 H 1.09005 * 109.46389 * 58.63964 * 13 12 11 40 40 H 1.09006 * 109.45900 * 178.60682 * 13 12 11 41 41 H 0.96995 * 119.99874 * 180.02562 * 19 18 16 42 42 H 1.09004 * 109.59183 * 113.82396 * 24 10 7 43 43 H 1.09003 * 109.70425 * 353.46935 * 24 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2491 5 17 1.4391 0.1285 -2.7214 6 6 2.0399 -0.7212 1.2493 7 16 1.4352 0.1340 2.7304 8 8 0.0278 -0.0181 2.8543 9 8 2.0478 1.4102 2.8544 10 7 2.0527 -0.7405 3.9937 11 6 1.2988 -1.8659 4.5645 12 6 2.1950 -3.1083 4.5662 13 6 3.5007 -2.7903 5.2983 14 6 4.2368 -1.6656 4.5668 15 1 4.4379 -1.9702 3.5397 16 6 5.5381 -1.3759 5.2695 17 1 5.5580 -0.7008 6.1123 18 6 6.7032 -1.9726 4.8365 19 7 7.8153 -1.8176 5.5212 20 14 6.7021 -3.0013 3.2772 21 1 6.8803 -2.1149 2.0993 22 1 7.8151 -3.9829 3.3310 23 1 5.4099 -3.7240 3.1619 24 6 3.3644 -0.4063 4.5651 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0277 0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9562 -0.8901 30 1 1.6766 1.9564 0.8899 31 1 3.1300 -0.7210 -1.2493 32 1 1.6766 -1.7491 -1.2491 33 1 3.1299 -0.7216 1.2492 34 1 1.6765 -1.7489 1.2494 35 1 0.4116 -2.0562 3.9605 36 1 1.0034 -1.6271 5.5862 37 1 2.4152 -3.3994 3.5392 38 1 1.6828 -3.9256 5.0740 39 1 3.2780 -2.4756 6.3179 40 1 4.1296 -3.6803 5.3223 41 1 8.6350 -2.2371 5.2163 42 1 3.2375 -0.0484 5.5869 43 1 3.8410 0.3676 3.9634 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867497140.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:00 Heat of formation + Delta-G solvation = -119.930845 kcal Electronic energy + Delta-G solvation = -25144.470142 eV Core-core repulsion = 21569.069227 eV Total energy + Delta-G solvation = -3575.400915 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 323.111 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.42715 -38.99426 -38.27974 -37.05107 -36.45019 -35.07450 -33.12883 -32.14646 -28.98739 -28.37017 -28.16302 -27.08631 -25.28792 -23.15143 -21.20393 -20.36875 -19.86309 -19.11785 -18.50332 -17.34767 -17.21323 -16.55708 -16.11956 -15.97639 -15.48666 -15.34069 -15.08170 -14.68196 -14.58206 -14.46782 -14.42399 -14.21953 -14.05500 -13.71549 -13.25417 -13.05973 -12.97689 -12.92776 -12.82527 -12.55582 -12.47110 -12.41414 -12.28560 -12.06903 -11.94495 -11.79933 -11.77851 -11.45042 -11.30609 -11.24097 -11.06857 -10.91153 -10.60726 -9.80781 -8.25246 -6.29579 -0.78275 1.30347 1.36939 1.39112 1.49886 1.63931 2.38403 2.80554 3.07782 3.12201 3.33760 3.47647 3.50151 3.77952 4.01052 4.07815 4.16234 4.26491 4.40043 4.47767 4.49977 4.50508 4.54335 4.63318 4.72565 4.79166 4.81981 4.83648 4.93500 4.94713 5.05017 5.16630 5.22747 5.23479 5.26529 5.34233 5.57469 5.61233 5.72645 5.83497 6.35585 6.78787 7.36085 8.91747 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.013999 B = 0.004816 C = 0.004091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.644777 B = 5812.853044 C = 6842.666033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.056 4.056 3 C -0.188 4.188 4 C -0.013 4.013 5 Cl -0.191 7.191 6 C -0.618 4.618 7 S 2.608 3.392 8 O -0.972 6.972 9 O -0.986 6.986 10 N -1.002 6.002 11 C 0.117 3.883 12 C -0.132 4.132 13 C -0.110 4.110 14 C 0.004 3.996 15 H 0.044 0.956 16 C -0.517 4.517 17 H 0.030 0.970 18 C 0.011 3.989 19 N -0.951 5.951 20 Si 0.934 3.066 21 H -0.262 1.262 22 H -0.295 1.295 23 H -0.230 1.230 24 C 0.140 3.860 25 H 0.059 0.941 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.059 0.941 31 H 0.109 0.891 32 H 0.121 0.879 33 H 0.149 0.851 34 H 0.169 0.831 35 H 0.107 0.893 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.092 0.908 39 H 0.046 0.954 40 H 0.042 0.958 41 H 0.264 0.736 42 H 0.053 0.947 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.722 -2.650 -14.347 21.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.057 4.057 3 C -0.245 4.245 4 C -0.077 4.077 5 Cl -0.165 7.165 6 C -0.749 4.749 7 S 2.705 3.295 8 O -0.963 6.963 9 O -0.976 6.976 10 N -0.839 5.839 11 C -0.008 4.008 12 C -0.171 4.171 13 C -0.148 4.148 14 C -0.017 4.017 15 H 0.062 0.938 16 C -0.556 4.556 17 H 0.049 0.951 18 C -0.186 4.186 19 N -0.591 5.591 20 Si 0.757 3.243 21 H -0.187 1.187 22 H -0.222 1.222 23 H -0.153 1.153 24 C 0.014 3.986 25 H 0.078 0.922 26 H 0.103 0.897 27 H 0.106 0.894 28 H 0.092 0.908 29 H 0.105 0.895 30 H 0.078 0.922 31 H 0.127 0.873 32 H 0.139 0.861 33 H 0.167 0.833 34 H 0.187 0.813 35 H 0.125 0.875 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.111 0.889 39 H 0.064 0.936 40 H 0.061 0.939 41 H 0.073 0.927 42 H 0.071 0.929 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -16.161 -1.837 -14.319 21.670 hybrid contribution 1.314 -0.520 -0.224 1.431 sum -14.847 -2.357 -14.543 20.916 Atomic orbital electron populations 1.22480 0.92339 1.05028 1.04161 1.20484 0.97302 0.95637 0.92320 1.22511 1.03133 0.94732 1.04173 1.24582 1.02507 0.98200 0.82387 1.98710 1.90660 1.82123 1.45005 1.30729 1.14244 1.15258 1.14702 1.04934 0.74034 0.74657 0.75831 1.93535 1.29820 1.86876 1.86023 1.93551 1.78459 1.39664 1.85952 1.57695 1.29810 1.47617 1.48815 1.21629 0.93866 0.84882 1.00381 1.22014 0.95794 0.97478 1.01780 1.21659 0.95760 0.98317 0.99086 1.19471 0.92666 0.93113 0.96436 0.93827 1.21224 0.92327 1.26924 1.15130 0.95126 1.25970 0.94881 0.97371 1.00332 1.70075 1.01175 1.46734 1.41152 0.85933 0.79125 0.79221 0.80014 1.18719 1.22187 1.15299 1.21406 0.80688 0.97975 0.98485 0.92183 0.89723 0.89423 0.90756 0.89498 0.92248 0.87294 0.86055 0.83292 0.81319 0.87458 0.91075 0.90864 0.88918 0.93562 0.93882 0.92687 0.92852 0.90598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.28 7.79 71.98 0.56 -2.72 16 2 C -0.06 -0.99 0.58 -52.18 -0.03 -1.02 16 3 C -0.19 -4.01 7.79 71.98 0.56 -3.45 16 4 C -0.01 -0.18 5.60 71.98 0.40 0.22 16 5 Cl -0.19 -3.24 26.53 -2.72 -0.07 -3.31 16 6 C -0.62 -11.52 5.18 71.98 0.37 -11.15 16 7 S 2.61 72.01 4.45 -56.49 -0.25 71.76 16 8 O -0.97 -28.54 14.34 -127.65 -1.83 -30.37 16 9 O -0.99 -34.27 14.35 -127.65 -1.83 -36.10 16 10 N -1.00 -29.63 3.22 -512.90 -1.65 -31.29 16 11 C 0.12 2.87 6.32 86.35 0.55 3.42 16 12 C -0.13 -3.26 6.08 30.67 0.19 -3.07 16 13 C -0.11 -3.89 5.15 30.62 0.16 -3.73 16 14 C 0.00 0.15 1.93 -11.46 -0.02 0.12 16 15 H 0.04 1.67 5.24 -2.39 -0.01 1.66 16 16 C -0.52 -27.52 8.86 25.60 0.23 -27.29 16 17 H 0.03 1.84 8.06 -2.91 -0.02 1.82 16 18 C 0.01 0.63 5.47 84.65 0.46 1.09 16 19 N -0.95 -57.45 13.96 21.45 0.30 -57.15 16 20 Si 0.93 40.01 27.03 68.60 1.85 41.86 16 21 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 22 H -0.30 -12.93 7.11 99.48 0.71 -12.22 16 23 H -0.23 -8.55 6.77 99.48 0.67 -7.87 16 24 C 0.14 5.19 5.58 86.36 0.48 5.68 16 25 H 0.06 1.31 5.46 -2.39 -0.01 1.29 16 26 H 0.08 1.40 7.06 -2.38 -0.02 1.39 16 27 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.09 1.66 7.06 -2.38 -0.02 1.64 16 30 H 0.06 1.50 5.46 -2.39 -0.01 1.49 16 31 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.15 2.62 8.14 -2.39 -0.02 2.60 16 34 H 0.17 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.11 2.09 7.10 -2.39 -0.02 2.07 16 36 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 37 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 40 H 0.04 1.61 8.14 -2.38 -0.02 1.59 16 41 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 42 H 0.05 2.09 8.14 -2.38 -0.02 2.07 16 43 H 0.08 2.90 7.11 -2.39 -0.02 2.89 16 Total: -1.00 -69.18 349.76 1.38 -67.81 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: 0.95 Total: 18.68 kcal Atomic # 6 Polarization: -45.81 SS G_CDS: 3.91 Total: -41.90 kcal Atomic # 7 Polarization: -87.08 SS G_CDS: -1.35 Total: -88.44 kcal Atomic # 8 Polarization: -62.80 SS G_CDS: -3.66 Total: -66.47 kcal Atomic # 14 Polarization: 40.01 SS G_CDS: 1.85 Total: 41.86 kcal Atomic # 16 Polarization: 72.01 SS G_CDS: -0.25 Total: 71.76 kcal Atomic # 17 Polarization: -3.24 SS G_CDS: -0.07 Total: -3.31 kcal Total: -69.18 1.38 -67.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867497140.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.123 kcal (2) G-P(sol) polarization free energy of solvation -69.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds