Wall clock time and date at job start Tue Mar 31 2020 14:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47053 * 2 1 4 4 C 1.53001 * 109.47519 * 239.99894 * 2 1 3 5 5 Cl 1.80290 * 109.47121 * 59.99689 * 4 2 1 6 6 C 1.53002 * 109.47140 * 119.99571 * 2 1 3 7 7 S 1.81399 * 109.47261 * 300.00257 * 6 2 1 8 8 O 1.42098 * 110.54635 * 68.37191 * 7 6 2 9 9 O 1.42105 * 110.54360 * 291.62271 * 7 6 2 10 10 N 1.65595 * 104.45088 * 180.02562 * 7 6 2 11 11 C 1.46919 * 120.63452 * 90.00003 * 10 7 6 12 12 C 1.53195 * 108.77845 * 233.58521 * 11 10 7 13 13 C 1.53039 * 109.31257 * 305.36660 * 12 11 10 14 14 C 1.53046 * 109.52798 * 61.36716 * 13 12 11 15 15 H 1.08998 * 109.49692 * 58.57850 * 14 13 12 16 16 C 1.50701 * 109.49738 * 178.67638 * 14 13 12 17 17 H 1.08001 * 119.99951 * 119.99633 * 16 14 13 18 18 C 1.37877 * 120.00031 * 300.00253 * 16 14 13 19 19 N 1.31509 * 119.99845 * 359.97438 * 18 16 14 20 20 Si 1.86800 * 119.99891 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47016 * 89.99704 * 20 18 16 22 22 H 1.48500 * 109.47168 * 209.99886 * 20 18 16 23 23 H 1.48502 * 109.46959 * 329.99752 * 20 18 16 24 24 C 1.46931 * 120.62935 * 269.97480 * 10 7 6 25 25 H 1.08997 * 109.47354 * 300.00273 * 1 2 3 26 26 H 1.09005 * 109.47393 * 60.00309 * 1 2 3 27 27 H 1.09000 * 109.46934 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47192 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.47008 * 299.99405 * 3 2 1 30 30 H 1.08997 * 109.47263 * 59.99671 * 3 2 1 31 31 H 1.08998 * 109.47441 * 180.02562 * 4 2 1 32 32 H 1.09000 * 109.46742 * 299.99781 * 4 2 1 33 33 H 1.09006 * 109.47233 * 180.02562 * 6 2 1 34 34 H 1.09000 * 109.47219 * 60.00160 * 6 2 1 35 35 H 1.08997 * 109.59005 * 113.79997 * 11 10 7 36 36 H 1.09002 * 109.70256 * 353.44233 * 11 10 7 37 37 H 1.08997 * 109.50026 * 185.40903 * 12 11 10 38 38 H 1.09006 * 109.51801 * 65.33221 * 12 11 10 39 39 H 1.09002 * 109.46050 * 181.38302 * 13 12 11 40 40 H 1.09004 * 109.46034 * 301.35518 * 13 12 11 41 41 H 0.97009 * 119.99736 * 180.02562 * 19 18 16 42 42 H 1.08998 * 109.58959 * 246.19999 * 24 10 7 43 43 H 1.09003 * 109.58181 * 6.48482 * 24 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 17 1.4391 0.1285 -2.7213 6 6 2.0400 -0.7212 1.2493 7 16 1.4353 0.1340 2.7304 8 8 0.0279 -0.0181 2.8544 9 8 2.0479 1.4102 2.8544 10 7 2.0540 -0.7398 3.9936 11 6 3.3657 -0.4045 4.5644 12 6 4.2388 -1.6632 4.5666 13 6 3.5036 -2.7880 5.2990 14 6 2.1979 -3.1071 4.5672 15 1 2.4182 -3.3984 3.5402 16 6 1.4902 -4.2366 5.2704 17 1 0.4996 -4.0857 5.6732 18 6 2.1075 -5.4627 5.3995 19 7 3.3136 -5.6466 4.9085 20 14 1.2306 -6.8626 6.2717 21 1 0.4403 -7.6425 5.2856 22 1 2.2325 -7.7495 6.9157 23 1 0.3218 -6.3086 7.3073 24 6 1.3015 -1.8648 4.5654 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4426 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9564 0.8899 31 1 3.1300 -0.7216 -1.2490 32 1 1.6767 -1.7489 -1.2491 33 1 3.1300 -0.7208 1.2496 34 1 1.6767 -1.7488 1.2494 35 1 3.2389 -0.0461 5.5859 36 1 3.8416 0.3693 3.9621 37 1 5.1798 -1.4524 5.0747 38 1 4.4403 -1.9685 3.5397 39 1 4.1330 -3.6776 5.3234 40 1 3.2808 -2.4727 6.3184 41 1 3.7477 -6.5094 4.9990 42 1 1.0064 -1.6254 5.5870 43 1 0.4129 -2.0536 3.9631 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867497142.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:03 Heat of formation + Delta-G solvation = -101.696265 kcal Electronic energy + Delta-G solvation = -24984.532088 eV Core-core repulsion = 21409.921884 eV Total energy + Delta-G solvation = -3574.610204 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 323.111 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -38.13801 -37.79000 -36.98935 -35.86256 -35.57333 -33.38556 -31.18373 -30.17743 -27.97957 -27.48492 -27.38293 -25.18525 -23.65629 -21.75065 -19.93829 -19.25482 -18.39661 -17.53029 -16.31648 -16.17713 -15.98773 -15.30413 -15.06169 -14.69128 -14.20913 -14.07118 -13.63090 -13.52088 -13.30464 -13.20651 -12.87625 -12.81921 -12.67177 -12.22146 -12.07402 -11.91275 -11.73294 -11.51895 -11.38641 -11.22963 -11.18523 -11.04494 -10.91018 -10.86954 -10.75168 -10.49100 -10.32902 -10.29724 -10.01165 -9.83955 -9.44488 -8.93169 -8.51752 -8.22307 -6.09735 -4.17144 0.43745 2.05677 2.90666 3.24744 3.32201 3.35820 3.95159 4.17688 4.25593 4.35408 4.39043 4.47936 4.87119 4.96143 5.13192 5.21341 5.22537 5.29463 5.43178 5.53547 5.61402 5.67863 5.70298 5.74726 5.83783 5.93503 6.08939 6.14316 6.20161 6.25376 6.40967 6.53435 6.58195 6.79419 6.94406 7.11689 7.35024 7.62247 7.82566 8.00441 8.31053 8.86545 9.48647 10.95463 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.016126 B = 0.003944 C = 0.003585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.941452 B = 7098.525329 C = 7809.042076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.055 4.055 3 C -0.179 4.179 4 C -0.013 4.013 5 Cl -0.184 7.184 6 C -0.631 4.631 7 S 2.613 3.387 8 O -0.953 6.953 9 O -0.962 6.962 10 N -0.994 5.994 11 C 0.124 3.876 12 C -0.136 4.136 13 C -0.111 4.111 14 C 0.039 3.961 15 H 0.028 0.972 16 C -0.517 4.517 17 H 0.059 0.941 18 C 0.065 3.935 19 N -0.889 5.889 20 Si 0.892 3.108 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.273 1.273 24 C 0.125 3.875 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.134 0.866 34 H 0.140 0.860 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.057 0.943 38 H 0.055 0.945 39 H 0.095 0.905 40 H 0.037 0.963 41 H 0.261 0.739 42 H 0.063 0.937 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.681 10.415 -9.708 14.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.057 4.057 3 C -0.237 4.237 4 C -0.077 4.077 5 Cl -0.158 7.158 6 C -0.759 4.759 7 S 2.706 3.294 8 O -0.943 6.943 9 O -0.952 6.952 10 N -0.832 5.832 11 C -0.001 4.001 12 C -0.175 4.175 13 C -0.149 4.149 14 C 0.019 3.981 15 H 0.046 0.954 16 C -0.556 4.556 17 H 0.077 0.923 18 C -0.137 4.137 19 N -0.527 5.527 20 Si 0.720 3.280 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.198 1.198 24 C 0.001 3.999 25 H 0.096 0.904 26 H 0.096 0.904 27 H 0.091 0.909 28 H 0.088 0.912 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.116 0.884 32 H 0.118 0.882 33 H 0.152 0.848 34 H 0.158 0.842 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.113 0.887 40 H 0.055 0.945 41 H 0.071 0.929 42 H 0.081 0.919 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.229 11.109 -9.749 14.782 hybrid contribution 0.129 -1.564 0.095 1.572 sum 0.358 9.545 -9.654 13.580 Atomic orbital electron populations 1.22442 0.92398 1.04348 1.04586 1.20463 0.97325 0.95994 0.91917 1.22437 1.02568 0.94015 1.04631 1.24496 1.01592 0.97836 0.83783 1.98699 1.90589 1.81784 1.44679 1.30871 1.13005 1.14753 1.17225 1.04907 0.74705 0.74736 0.75078 1.93572 1.28953 1.86634 1.85171 1.93545 1.78433 1.37805 1.85436 1.57634 1.29857 1.48172 1.47582 1.21410 0.82282 0.97267 0.99155 1.22034 0.97784 0.96360 1.01322 1.21587 0.99191 0.97121 0.96979 1.18999 0.91918 0.90269 0.96948 0.95394 1.21114 1.02104 0.95378 1.37022 0.92323 1.24928 0.94863 0.98518 0.95397 1.69865 1.13305 1.23830 1.45736 0.86596 0.79414 0.82112 0.79905 1.20674 1.21262 1.19812 1.21844 0.94222 0.85546 0.98284 0.90417 0.90395 0.90924 0.91213 0.90383 0.90435 0.88446 0.88245 0.84797 0.84201 0.91506 0.90627 0.92479 0.92635 0.88714 0.94457 0.92947 0.91882 0.90564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.11 7.79 37.15 0.29 -1.82 16 2 C -0.06 -0.61 0.58 -154.51 -0.09 -0.70 16 3 C -0.18 -1.97 7.79 37.16 0.29 -1.68 16 4 C -0.01 -0.13 5.60 37.16 0.21 0.08 16 5 Cl -0.18 -1.87 26.53 -51.86 -1.38 -3.25 16 6 C -0.63 -7.52 5.18 37.16 0.19 -7.33 16 7 S 2.61 40.19 4.45 -107.50 -0.48 39.71 16 8 O -0.95 -16.95 14.35 -57.54 -0.83 -17.78 16 9 O -0.96 -15.88 14.35 -57.54 -0.83 -16.70 16 10 N -0.99 -16.72 3.22 -113.52 -0.37 -17.09 16 11 C 0.12 1.93 6.31 -3.71 -0.02 1.91 16 12 C -0.14 -2.28 6.08 -26.61 -0.16 -2.44 16 13 C -0.11 -2.35 4.96 -26.69 -0.13 -2.48 16 14 C 0.04 0.87 2.25 -91.65 -0.21 0.66 16 15 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 16 C -0.52 -13.17 8.56 -34.44 -0.29 -13.46 16 17 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 18 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 19 N -0.89 -23.69 11.31 55.43 0.63 -23.06 16 20 Si 0.89 20.25 29.54 -169.99 -5.02 15.23 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 22 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 24 C 0.12 2.43 5.54 -3.71 -0.02 2.41 16 25 H 0.08 1.02 5.46 -51.93 -0.28 0.73 16 26 H 0.08 0.82 7.06 -51.93 -0.37 0.45 16 27 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.08 0.78 7.06 -51.93 -0.37 0.41 16 30 H 0.08 0.96 5.46 -51.93 -0.28 0.68 16 31 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.13 1.35 8.14 -51.92 -0.42 0.93 16 34 H 0.14 1.62 8.14 -51.92 -0.42 1.19 16 35 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.08 1.03 7.10 -51.93 -0.37 0.66 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.09 2.29 6.04 -51.93 -0.31 1.97 16 40 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 42 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 43 H 0.08 1.46 7.10 -51.93 -0.37 1.09 16 LS Contribution 350.05 15.07 5.28 5.28 Total: -1.00 -28.85 350.05 -10.00 -38.84 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -6.97 Total: 2.08 kcal Atomic # 6 Polarization: -23.22 SS G_CDS: -0.04 Total: -23.27 kcal Atomic # 7 Polarization: -40.41 SS G_CDS: 0.26 Total: -40.15 kcal Atomic # 8 Polarization: -32.83 SS G_CDS: -1.65 Total: -34.48 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Atomic # 16 Polarization: 40.19 SS G_CDS: -0.48 Total: 39.71 kcal Atomic # 17 Polarization: -1.87 SS G_CDS: -1.38 Total: -3.25 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -28.85 -10.00 -38.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867497142.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.853 kcal (2) G-P(sol) polarization free energy of solvation -28.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds