Wall clock time and date at job start Tue Mar 31 2020 14:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47053 * 2 1 4 4 C 1.53001 * 109.47519 * 239.99894 * 2 1 3 5 5 Cl 1.80290 * 109.47121 * 59.99689 * 4 2 1 6 6 C 1.53002 * 109.47140 * 119.99571 * 2 1 3 7 7 S 1.81399 * 109.47261 * 300.00257 * 6 2 1 8 8 O 1.42098 * 110.54635 * 68.37191 * 7 6 2 9 9 O 1.42105 * 110.54360 * 291.62271 * 7 6 2 10 10 N 1.65595 * 104.45088 * 180.02562 * 7 6 2 11 11 C 1.46919 * 120.63452 * 90.00003 * 10 7 6 12 12 C 1.53195 * 108.77845 * 233.58521 * 11 10 7 13 13 C 1.53039 * 109.31257 * 305.36660 * 12 11 10 14 14 C 1.53046 * 109.52798 * 61.36716 * 13 12 11 15 15 H 1.08998 * 109.49692 * 58.57850 * 14 13 12 16 16 C 1.50701 * 109.49738 * 178.67638 * 14 13 12 17 17 H 1.08001 * 119.99951 * 119.99633 * 16 14 13 18 18 C 1.37877 * 120.00031 * 300.00253 * 16 14 13 19 19 N 1.31509 * 119.99845 * 359.97438 * 18 16 14 20 20 Si 1.86800 * 119.99891 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47016 * 89.99704 * 20 18 16 22 22 H 1.48500 * 109.47168 * 209.99886 * 20 18 16 23 23 H 1.48502 * 109.46959 * 329.99752 * 20 18 16 24 24 C 1.46931 * 120.62935 * 269.97480 * 10 7 6 25 25 H 1.08997 * 109.47354 * 300.00273 * 1 2 3 26 26 H 1.09005 * 109.47393 * 60.00309 * 1 2 3 27 27 H 1.09000 * 109.46934 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47192 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.47008 * 299.99405 * 3 2 1 30 30 H 1.08997 * 109.47263 * 59.99671 * 3 2 1 31 31 H 1.08998 * 109.47441 * 180.02562 * 4 2 1 32 32 H 1.09000 * 109.46742 * 299.99781 * 4 2 1 33 33 H 1.09006 * 109.47233 * 180.02562 * 6 2 1 34 34 H 1.09000 * 109.47219 * 60.00160 * 6 2 1 35 35 H 1.08997 * 109.59005 * 113.79997 * 11 10 7 36 36 H 1.09002 * 109.70256 * 353.44233 * 11 10 7 37 37 H 1.08997 * 109.50026 * 185.40903 * 12 11 10 38 38 H 1.09006 * 109.51801 * 65.33221 * 12 11 10 39 39 H 1.09002 * 109.46050 * 181.38302 * 13 12 11 40 40 H 1.09004 * 109.46034 * 301.35518 * 13 12 11 41 41 H 0.97009 * 119.99736 * 180.02562 * 19 18 16 42 42 H 1.08998 * 109.58959 * 246.19999 * 24 10 7 43 43 H 1.09003 * 109.58181 * 6.48482 * 24 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 17 1.4391 0.1285 -2.7213 6 6 2.0400 -0.7212 1.2493 7 16 1.4353 0.1340 2.7304 8 8 0.0279 -0.0181 2.8544 9 8 2.0479 1.4102 2.8544 10 7 2.0540 -0.7398 3.9936 11 6 3.3657 -0.4045 4.5644 12 6 4.2388 -1.6632 4.5666 13 6 3.5036 -2.7880 5.2990 14 6 2.1979 -3.1071 4.5672 15 1 2.4182 -3.3984 3.5402 16 6 1.4902 -4.2366 5.2704 17 1 0.4996 -4.0857 5.6732 18 6 2.1075 -5.4627 5.3995 19 7 3.3136 -5.6466 4.9085 20 14 1.2306 -6.8626 6.2717 21 1 0.4403 -7.6425 5.2856 22 1 2.2325 -7.7495 6.9157 23 1 0.3218 -6.3086 7.3073 24 6 1.3015 -1.8648 4.5654 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4426 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9564 0.8899 31 1 3.1300 -0.7216 -1.2490 32 1 1.6767 -1.7489 -1.2491 33 1 3.1300 -0.7208 1.2496 34 1 1.6767 -1.7488 1.2494 35 1 3.2389 -0.0461 5.5859 36 1 3.8416 0.3693 3.9621 37 1 5.1798 -1.4524 5.0747 38 1 4.4403 -1.9685 3.5397 39 1 4.1330 -3.6776 5.3234 40 1 3.2808 -2.4727 6.3184 41 1 3.7477 -6.5094 4.9990 42 1 1.0064 -1.6254 5.5870 43 1 0.4129 -2.0536 3.9631 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867497142.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:03 Heat of formation + Delta-G solvation = -118.150634 kcal Electronic energy + Delta-G solvation = -24985.245603 eV Core-core repulsion = 21409.921884 eV Total energy + Delta-G solvation = -3575.323719 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 323.111 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.31248 -38.97938 -38.26490 -37.04135 -36.44389 -35.17792 -32.68860 -31.84870 -28.96348 -28.36237 -28.15423 -27.00899 -25.13896 -23.30058 -21.25910 -20.36782 -19.71509 -18.89076 -18.10497 -17.31915 -17.21948 -16.61125 -16.18239 -15.94794 -15.39529 -15.22064 -14.98524 -14.78594 -14.59140 -14.36985 -14.31728 -14.04314 -13.84681 -13.65000 -13.19061 -12.98282 -12.96084 -12.83112 -12.65740 -12.58531 -12.45196 -12.40217 -12.38931 -12.06388 -11.90231 -11.82566 -11.76536 -11.54281 -11.23532 -11.20085 -10.93937 -10.73766 -10.39098 -9.72144 -8.06132 -6.19188 -0.75356 1.30611 1.43335 1.46208 1.54313 1.66657 2.46255 2.81697 3.11137 3.21507 3.35394 3.49467 3.51408 3.81550 4.02317 4.09288 4.27656 4.37424 4.49075 4.51033 4.51729 4.60702 4.61989 4.64328 4.82093 4.83614 4.84447 4.91497 4.94468 4.97865 5.11689 5.23571 5.25994 5.33050 5.40378 5.56640 5.67816 5.74968 6.01380 6.19006 6.42881 6.91439 7.48724 8.96977 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.016126 B = 0.003944 C = 0.003585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.941452 B = 7098.525329 C = 7809.042076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.055 4.055 3 C -0.183 4.183 4 C -0.012 4.012 5 Cl -0.190 7.190 6 C -0.614 4.614 7 S 2.612 3.388 8 O -0.984 6.984 9 O -0.974 6.974 10 N -1.000 6.000 11 C 0.121 3.879 12 C -0.127 4.127 13 C -0.107 4.107 14 C 0.038 3.962 15 H 0.012 0.988 16 C -0.537 4.537 17 H 0.052 0.948 18 C 0.022 3.978 19 N -0.910 5.910 20 Si 0.945 3.055 21 H -0.277 1.277 22 H -0.285 1.285 23 H -0.272 1.272 24 C 0.136 3.864 25 H 0.059 0.941 26 H 0.087 0.913 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.060 0.940 31 H 0.117 0.883 32 H 0.109 0.891 33 H 0.161 0.839 34 H 0.147 0.853 35 H 0.069 0.931 36 H 0.103 0.897 37 H 0.079 0.921 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.027 0.973 41 H 0.260 0.740 42 H 0.055 0.945 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.515 10.812 -10.850 15.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.057 4.057 3 C -0.241 4.241 4 C -0.076 4.076 5 Cl -0.164 7.164 6 C -0.745 4.745 7 S 2.710 3.290 8 O -0.975 6.975 9 O -0.965 6.965 10 N -0.837 5.837 11 C -0.004 4.004 12 C -0.166 4.166 13 C -0.145 4.145 14 C 0.018 3.982 15 H 0.030 0.970 16 C -0.576 4.576 17 H 0.071 0.929 18 C -0.177 4.177 19 N -0.549 5.549 20 Si 0.772 3.228 21 H -0.203 1.203 22 H -0.211 1.211 23 H -0.196 1.196 24 C 0.011 3.989 25 H 0.078 0.922 26 H 0.106 0.894 27 H 0.093 0.907 28 H 0.103 0.897 29 H 0.104 0.896 30 H 0.079 0.921 31 H 0.136 0.864 32 H 0.127 0.873 33 H 0.179 0.821 34 H 0.165 0.835 35 H 0.088 0.912 36 H 0.121 0.879 37 H 0.098 0.902 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.046 0.954 41 H 0.069 0.931 42 H 0.073 0.927 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.050 11.537 -10.849 15.871 hybrid contribution -0.142 -1.663 0.400 1.716 sum 0.909 9.874 -10.449 14.405 Atomic orbital electron populations 1.22497 0.93251 1.04431 1.04190 1.20483 0.96727 0.96241 0.92227 1.22484 1.03575 0.93779 1.04212 1.24553 1.02774 0.97794 0.82439 1.98705 1.90752 1.81977 1.44944 1.30683 1.14638 1.14337 1.14867 1.04794 0.73974 0.74542 0.75693 1.93536 1.31003 1.86974 1.85957 1.93529 1.78325 1.38598 1.86022 1.57602 1.30141 1.47164 1.48799 1.21550 0.81568 0.97231 1.00067 1.21938 0.98351 0.95108 1.01228 1.21419 0.98487 0.97615 0.96995 1.18944 0.92899 0.90740 0.95644 0.96992 1.21502 1.02167 0.96742 1.37141 0.92930 1.25560 0.95500 1.00524 0.96150 1.69979 1.14185 1.24132 1.46633 0.85752 0.78449 0.79643 0.78970 1.20333 1.21103 1.19625 1.21477 0.93850 0.85396 0.98153 0.92208 0.89421 0.90668 0.89698 0.89581 0.92126 0.86424 0.87275 0.82091 0.83505 0.91248 0.87892 0.90235 0.91980 0.91816 0.95448 0.93068 0.92697 0.90732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.12 7.79 71.98 0.56 -3.56 16 2 C -0.05 -1.08 0.58 -52.18 -0.03 -1.11 16 3 C -0.18 -3.60 7.79 71.98 0.56 -3.04 16 4 C -0.01 -0.19 5.60 71.98 0.40 0.21 16 5 Cl -0.19 -3.42 26.53 -2.72 -0.07 -3.49 16 6 C -0.61 -13.10 5.18 71.98 0.37 -12.72 16 7 S 2.61 77.29 4.45 -56.49 -0.25 77.04 16 8 O -0.98 -35.00 14.35 -127.65 -1.83 -36.83 16 9 O -0.97 -30.68 14.35 -127.65 -1.83 -32.51 16 10 N -1.00 -32.57 3.22 -513.07 -1.65 -34.22 16 11 C 0.12 3.51 6.31 86.36 0.54 4.06 16 12 C -0.13 -4.04 6.08 30.67 0.19 -3.85 16 13 C -0.11 -4.54 4.96 30.62 0.15 -4.39 16 14 C 0.04 1.70 2.25 -11.46 -0.03 1.68 16 15 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 16 C -0.54 -27.70 8.56 25.60 0.22 -27.48 16 17 H 0.05 2.70 7.74 -2.91 -0.02 2.67 16 18 C 0.02 1.15 5.30 84.66 0.45 1.60 16 19 N -0.91 -48.95 11.31 21.45 0.24 -48.70 16 20 Si 0.95 41.69 29.54 68.60 2.03 43.72 16 21 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 22 H -0.29 -12.43 7.11 99.48 0.71 -11.72 16 23 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 24 C 0.14 5.33 5.54 86.36 0.48 5.81 16 25 H 0.06 1.55 5.46 -2.39 -0.01 1.53 16 26 H 0.09 1.72 7.06 -2.38 -0.02 1.70 16 27 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 29 H 0.09 1.54 7.06 -2.39 -0.02 1.52 16 30 H 0.06 1.41 5.46 -2.39 -0.01 1.40 16 31 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.16 2.62 8.14 -2.39 -0.02 2.60 16 34 H 0.15 3.05 8.14 -2.39 -0.02 3.03 16 35 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.10 2.47 7.10 -2.39 -0.02 2.45 16 37 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 38 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 39 H 0.06 3.11 6.04 -2.39 -0.01 3.10 16 40 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.26 13.44 8.31 -92.70 -0.77 12.67 16 42 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 43 H 0.07 2.89 7.10 -2.39 -0.02 2.88 16 Total: -1.00 -62.14 350.05 1.49 -60.66 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: 0.99 Total: 17.14 kcal Atomic # 6 Polarization: -46.67 SS G_CDS: 3.87 Total: -42.79 kcal Atomic # 7 Polarization: -81.52 SS G_CDS: -1.41 Total: -82.93 kcal Atomic # 8 Polarization: -65.68 SS G_CDS: -3.66 Total: -69.34 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.72 kcal Atomic # 16 Polarization: 77.29 SS G_CDS: -0.25 Total: 77.04 kcal Atomic # 17 Polarization: -3.42 SS G_CDS: -0.07 Total: -3.49 kcal Total: -62.14 1.49 -60.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867497142.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.495 kcal (2) G-P(sol) polarization free energy of solvation -62.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds