Wall clock time and date at job start Tue Mar 31 2020 14:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46923 * 2 1 4 4 H 1.09003 * 109.47247 * 304.99471 * 3 2 1 5 5 C 1.50699 * 109.47006 * 184.99844 * 3 2 1 6 6 H 1.08004 * 119.99913 * 240.00190 * 5 3 2 7 7 C 1.37879 * 120.00130 * 60.00091 * 5 3 2 8 8 N 1.31522 * 119.99793 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00131 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47245 * 59.99818 * 9 7 5 11 11 H 1.48499 * 109.47255 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47144 * 299.99684 * 9 7 5 13 13 O 1.45199 * 109.47084 * 64.99888 * 3 2 1 14 14 C 1.34231 * 116.99992 * 269.99843 * 13 3 2 15 15 O 1.20827 * 120.00124 * 359.97438 * 14 13 3 16 16 C 1.50699 * 119.99979 * 180.02562 * 14 13 3 17 17 H 1.08998 * 109.60107 * 336.80452 * 16 14 13 18 18 C 1.52919 * 109.60371 * 216.31372 * 16 14 13 19 19 N 1.45758 * 110.48677 * 290.99655 * 18 16 14 20 20 C 1.33353 * 124.10760 * 340.92574 * 19 18 16 21 21 O 1.21286 * 118.24438 * 182.20150 * 20 19 18 22 22 C 1.50178 * 123.50839 * 2.22158 * 20 19 18 23 23 C 1.53067 * 109.89068 * 342.41650 * 22 20 19 24 24 H 1.09001 * 109.70753 * 289.15378 * 23 22 20 25 25 C 1.53004 * 109.67429 * 168.63217 * 23 22 20 26 26 F 1.39894 * 109.47216 * 301.03624 * 25 23 22 27 27 F 1.39902 * 109.46676 * 61.03638 * 25 23 22 28 28 F 1.39897 * 109.47331 * 181.03250 * 25 23 22 29 29 H 1.09000 * 109.46876 * 60.00066 * 1 2 3 30 30 H 1.08993 * 109.46910 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47347 * 300.00491 * 1 2 3 32 32 H 1.08998 * 109.47217 * 240.00049 * 2 1 3 33 33 H 1.09000 * 109.46876 * 119.99933 * 2 1 3 34 34 H 0.96999 * 119.99872 * 179.97438 * 8 7 5 35 35 H 1.08997 * 109.30326 * 51.30868 * 18 16 14 36 36 H 1.09001 * 109.29969 * 170.68880 * 18 16 14 37 37 H 0.97000 * 117.94213 * 160.92776 * 19 18 16 38 38 H 1.09003 * 109.39998 * 222.28896 * 22 20 19 39 39 H 1.08993 * 109.33117 * 102.50423 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8419 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6524 7 6 4.1433 0.8785 -1.2279 8 7 3.4063 0.3366 -2.1729 9 14 6.0050 0.8801 -1.3810 10 1 6.5967 0.1453 -0.2342 11 1 6.3979 0.2168 -2.6502 12 1 6.5005 2.2800 -1.3807 13 8 1.6558 2.0917 1.2407 14 6 0.4727 2.7254 1.2559 15 8 -0.2189 2.7378 0.2652 16 6 0.0074 3.4226 2.5083 17 1 0.5060 2.9888 3.3750 18 6 -1.5069 3.2645 2.6510 19 7 -2.1989 4.0282 1.6202 20 6 -1.6452 5.0262 0.9305 21 8 -2.3321 5.6169 0.1241 22 6 -0.2165 5.4574 1.0984 23 6 0.3387 4.9172 2.4186 24 1 -0.1203 5.4456 3.2541 25 6 1.8559 5.1115 2.4572 26 9 2.4396 4.4412 1.3770 27 9 2.1534 6.4761 2.3752 28 9 2.3618 4.5952 3.6550 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.8293 -0.0612 -2.9498 35 1 -1.7698 2.2110 2.5563 36 1 -1.8156 3.6229 3.6331 37 1 -3.1200 3.7959 1.4237 38 1 -0.1651 6.5462 1.1026 39 1 0.3770 5.0701 0.2704 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000873522663.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:25 Heat of formation + Delta-G solvation = -280.909517 kcal Electronic energy + Delta-G solvation = -30463.246682 eV Core-core repulsion = 25762.855352 eV Total energy + Delta-G solvation = -4700.391330 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.118 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.01967 -47.55988 -47.37349 -41.04134 -39.25668 -36.91032 -35.49823 -33.93118 -33.48969 -31.42187 -30.32522 -27.36822 -27.03893 -24.87571 -23.28120 -22.54799 -21.41546 -19.94557 -18.96974 -18.41421 -18.13429 -18.00765 -17.44601 -16.68228 -16.47434 -16.16299 -15.84304 -15.37047 -14.99710 -14.54163 -14.40233 -14.25180 -13.89388 -13.85585 -13.64323 -13.54381 -13.44326 -13.31859 -13.12489 -12.80270 -12.64331 -12.21146 -11.83002 -11.61057 -11.58047 -11.46380 -11.32421 -11.20057 -10.96583 -10.70655 -10.31657 -9.90671 -9.87721 -9.75892 -9.43231 -9.11257 -8.85943 -8.47495 -6.20043 -4.26639 2.58107 2.61838 2.69324 3.15322 3.25126 3.25869 3.29819 3.37017 3.68521 3.76262 3.88711 4.26740 4.31289 4.44875 4.57543 4.67876 4.83391 5.03717 5.12058 5.17304 5.28745 5.35480 5.57154 5.64701 6.14179 6.20168 6.37020 6.69111 6.78193 6.87219 7.09473 7.15574 7.23800 7.57941 7.68606 7.87123 8.11774 8.18301 8.50403 8.83718 9.38370 10.86682 Molecular weight = 323.12amu Principal moments of inertia in cm(-1) A = 0.014113 B = 0.005663 C = 0.004690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.564036 B = 4943.588815 C = 5969.267357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.137 4.137 3 C 0.226 3.774 4 H 0.047 0.953 5 C -0.518 4.518 6 H 0.068 0.932 7 C 0.063 3.937 8 N -0.889 5.889 9 Si 0.909 3.091 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.274 1.274 13 O -0.343 6.343 14 C 0.450 3.550 15 O -0.499 6.499 16 C -0.108 4.108 17 H 0.132 0.868 18 C 0.133 3.867 19 N -0.710 5.710 20 C 0.548 3.452 21 O -0.553 6.553 22 C -0.141 4.141 23 C -0.126 4.126 24 H 0.135 0.865 25 C 0.451 3.549 26 F -0.152 7.152 27 F -0.183 7.183 28 F -0.178 7.178 29 H 0.053 0.947 30 H 0.032 0.968 31 H 0.029 0.971 32 H 0.109 0.891 33 H 0.042 0.958 34 H 0.267 0.733 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.404 0.596 38 H 0.116 0.884 39 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.808 6.590 13.135 16.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.175 4.175 3 C 0.174 3.826 4 H 0.065 0.935 5 C -0.556 4.556 6 H 0.087 0.913 7 C -0.139 4.139 8 N -0.527 5.527 9 Si 0.736 3.264 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.200 1.200 13 O -0.258 6.258 14 C 0.291 3.709 15 O -0.388 6.388 16 C -0.128 4.128 17 H 0.150 0.850 18 C 0.008 3.992 19 N -0.362 5.362 20 C 0.335 3.665 21 O -0.432 6.432 22 C -0.181 4.181 23 C -0.146 4.146 24 H 0.153 0.847 25 C 0.397 3.603 26 F -0.133 7.133 27 F -0.165 7.165 28 F -0.159 7.159 29 H 0.072 0.928 30 H 0.052 0.948 31 H 0.048 0.952 32 H 0.127 0.873 33 H 0.060 0.940 34 H 0.077 0.923 35 H 0.109 0.891 36 H 0.103 0.897 37 H 0.240 0.760 38 H 0.134 0.866 39 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -8.020 6.827 12.248 16.153 hybrid contribution 0.980 -0.339 -0.197 1.056 sum -7.040 6.487 12.050 15.390 Atomic orbital electron populations 1.21845 0.98431 0.98972 1.00539 1.22045 0.92546 0.99443 1.03465 1.20675 0.95087 0.88512 0.78327 0.93541 1.20971 0.89571 1.38833 1.06237 0.91345 1.24863 0.99136 0.94793 0.95079 1.69873 1.35449 1.37841 1.09487 0.86371 0.84027 0.78539 0.77460 1.19936 1.21050 1.19971 1.86504 1.33170 1.61782 1.44362 1.22675 0.81726 0.77790 0.88709 1.90677 1.55298 1.57812 1.34995 1.21445 0.98215 0.93577 0.99532 0.85007 1.21163 0.88360 0.97996 0.91648 1.45162 1.16851 1.34701 1.39447 1.19351 0.88488 0.78989 0.79704 1.90758 1.61925 1.54788 1.35683 1.21842 0.94937 1.04123 0.97166 1.22550 0.91038 0.97698 1.03339 0.84716 1.20273 0.91125 0.74098 0.74812 1.93402 1.85937 1.79573 1.54399 1.93181 1.94689 1.32541 1.96063 1.93187 1.89287 1.86827 1.46630 0.92826 0.94839 0.95192 0.87269 0.93953 0.92340 0.89117 0.89710 0.76021 0.86562 0.86185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 8.57 37.16 0.32 -2.56 16 2 C -0.14 -3.24 5.49 -26.73 -0.15 -3.39 16 3 C 0.23 5.69 2.25 -27.88 -0.06 5.63 16 4 H 0.05 1.32 7.16 -51.93 -0.37 0.95 16 5 C -0.52 -14.08 8.90 -34.44 -0.31 -14.38 16 6 H 0.07 1.86 7.81 -52.48 -0.41 1.45 16 7 C 0.06 1.71 5.29 -17.82 -0.09 1.62 16 8 N -0.89 -24.71 11.29 55.43 0.63 -24.09 16 9 Si 0.91 20.94 29.54 -169.99 -5.02 15.92 16 10 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 11 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 13 O -0.34 -7.35 8.24 -39.26 -0.32 -7.67 16 14 C 0.45 7.99 3.18 36.00 0.11 8.10 16 15 O -0.50 -10.03 10.84 -18.75 -0.20 -10.23 16 16 C -0.11 -1.26 2.58 -91.63 -0.24 -1.50 16 17 H 0.13 1.28 7.64 -51.93 -0.40 0.88 16 18 C 0.13 1.17 6.35 -4.48 -0.03 1.14 16 19 N -0.71 -8.09 4.86 -61.39 -0.30 -8.39 16 20 C 0.55 8.01 6.51 -11.87 -0.08 7.93 16 21 O -0.55 -10.19 17.78 5.55 0.10 -10.09 16 22 C -0.14 -1.87 4.48 -28.10 -0.13 -1.99 16 23 C -0.13 -1.38 2.14 -90.40 -0.19 -1.58 16 24 H 0.13 0.94 8.13 -51.93 -0.42 0.51 16 25 C 0.45 6.09 2.70 37.16 0.10 6.19 16 26 F -0.15 -2.75 13.35 2.25 0.03 -2.72 16 27 F -0.18 -2.37 17.05 2.25 0.04 -2.33 16 28 F -0.18 -2.35 16.70 2.25 0.04 -2.31 16 29 H 0.05 1.18 7.80 -51.93 -0.40 0.77 16 30 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.03 0.56 6.06 -51.93 -0.31 0.25 16 32 H 0.11 2.86 5.95 -51.93 -0.31 2.55 16 33 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 35 H 0.09 0.77 8.12 -51.93 -0.42 0.34 16 36 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.40 4.13 8.80 -40.82 -0.36 3.78 16 38 H 0.12 1.30 8.13 -51.93 -0.42 0.88 16 39 H 0.12 1.96 6.34 -51.93 -0.33 1.63 16 LS Contribution 324.06 15.07 4.88 4.88 Total: -1.00 -32.71 324.06 -5.43 -38.14 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -4.56 Total: 3.67 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: -0.74 Total: 5.22 kcal Atomic # 7 Polarization: -32.81 SS G_CDS: 0.33 Total: -32.48 kcal Atomic # 8 Polarization: -27.57 SS G_CDS: -0.43 Total: -28.00 kcal Atomic # 9 Polarization: -7.47 SS G_CDS: 0.11 Total: -7.37 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.71 -5.43 -38.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873522663.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -242.766 kcal (2) G-P(sol) polarization free energy of solvation -32.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -275.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -280.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds