Wall clock time and date at job start Tue Mar 31 2020 14:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47174 * 2 1 4 4 H 1.09004 * 109.46951 * 305.52412 * 3 2 1 5 5 C 1.50701 * 109.46878 * 185.52800 * 3 2 1 6 6 H 1.07999 * 120.00084 * 239.98962 * 5 3 2 7 7 C 1.37879 * 120.00186 * 59.99623 * 5 3 2 8 8 N 1.31510 * 119.99810 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99929 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47135 * 60.00325 * 9 7 5 11 11 H 1.48498 * 109.46988 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47571 * 300.00252 * 9 7 5 13 13 O 1.45196 * 109.47569 * 65.52607 * 3 2 1 14 14 C 1.34231 * 116.99854 * 262.15527 * 13 3 2 15 15 O 1.20829 * 120.00209 * 5.63992 * 14 13 3 16 16 C 1.50698 * 119.99833 * 185.64061 * 14 13 3 17 17 H 1.08999 * 109.60229 * 26.57344 * 16 14 13 18 18 C 1.52921 * 109.60321 * 147.05953 * 16 14 13 19 19 N 1.45761 * 110.48620 * 69.00534 * 18 16 14 20 20 C 1.33353 * 124.10654 * 19.07076 * 19 18 16 21 21 O 1.21280 * 118.24287 * 177.79983 * 20 19 18 22 22 C 1.50178 * 123.50808 * 357.78231 * 20 19 18 23 23 C 1.53067 * 109.89180 * 17.58133 * 22 20 19 24 24 H 1.08997 * 109.70921 * 70.84854 * 23 22 20 25 25 C 1.53003 * 109.67246 * 191.36688 * 23 22 20 26 26 F 1.39900 * 109.46977 * 178.96190 * 25 23 22 27 27 F 1.39892 * 109.47160 * 298.96311 * 25 23 22 28 28 F 1.39904 * 109.47035 * 58.96779 * 25 23 22 29 29 H 1.09004 * 109.46887 * 54.26841 * 1 2 3 30 30 H 1.09004 * 109.47501 * 294.27319 * 1 2 3 31 31 H 1.08998 * 109.47281 * 174.26640 * 1 2 3 32 32 H 1.09009 * 109.46751 * 119.99054 * 2 1 3 33 33 H 1.08992 * 109.47475 * 239.99043 * 2 1 3 34 34 H 0.97002 * 119.99512 * 180.02562 * 8 7 5 35 35 H 1.09000 * 109.30103 * 189.31241 * 18 16 14 36 36 H 1.08995 * 109.30301 * 308.69419 * 18 16 14 37 37 H 0.97003 * 117.94108 * 199.07931 * 19 18 16 38 38 H 1.09000 * 109.39695 * 257.45153 * 22 20 19 39 39 H 1.09003 * 109.40185 * 137.71187 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5981 1.9841 -0.8364 5 6 3.5407 1.4446 -0.1369 6 1 4.1528 1.8869 0.6352 7 6 4.1325 0.8820 -1.2479 8 7 3.3872 0.3440 -2.1884 9 14 5.9927 0.8853 -1.4178 10 1 6.5952 0.1478 -0.2783 11 1 6.3746 0.2245 -2.6917 12 1 6.4874 2.2855 -1.4182 13 8 1.6666 2.0879 1.2459 14 6 0.5658 2.8559 1.2284 15 8 -0.1216 2.9039 0.2359 16 6 0.1874 3.6581 2.4466 17 1 1.0810 3.8817 3.0293 18 6 -0.4864 4.9609 2.0140 19 7 -1.7933 4.6894 1.4285 20 6 -2.4746 3.5579 1.6124 21 8 -3.5727 3.4605 1.1068 22 6 -1.9547 2.3977 2.4118 23 6 -0.7991 2.8565 3.3045 24 1 -1.1825 3.4859 4.1076 25 6 -0.0918 1.6369 3.8989 26 9 0.9779 2.0602 4.6950 27 9 -0.9952 0.9089 4.6805 28 9 0.3888 0.8265 2.8647 29 1 -0.3633 0.6002 -0.8343 30 1 -0.3634 0.4225 0.9368 31 1 -0.3634 -1.0225 -0.1027 32 1 1.8932 -0.5137 0.8902 33 1 1.8933 -0.5139 -0.8898 34 1 3.8036 -0.0522 -2.9698 35 1 -0.6082 5.6090 2.8819 36 1 0.1407 5.4637 1.2779 37 1 -2.1924 5.3747 0.8699 38 1 -1.6021 1.6202 1.7341 39 1 -2.7560 1.9982 3.0335 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000873522664.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:27 Heat of formation + Delta-G solvation = -302.980991 kcal Electronic energy + Delta-G solvation = -30643.227413 eV Core-core repulsion = 25941.878992 eV Total energy + Delta-G solvation = -4701.348421 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.118 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -51.11283 -48.59142 -48.56699 -42.22232 -40.60454 -38.24418 -36.99512 -35.49761 -34.79355 -33.38717 -31.31767 -29.32634 -28.06376 -26.08074 -25.00559 -23.72164 -22.64883 -21.72827 -20.25917 -19.48766 -19.28941 -19.06086 -18.70652 -18.58707 -17.82752 -17.31661 -17.10795 -16.81205 -16.28780 -16.17991 -15.49719 -15.35562 -15.10259 -15.02122 -14.92464 -14.80378 -14.67114 -14.52852 -14.46083 -14.10654 -13.87129 -13.69140 -13.30287 -13.26118 -13.08380 -12.89542 -12.64886 -12.57568 -12.55687 -12.41010 -12.15180 -11.69228 -11.46647 -11.21715 -11.05616 -10.75744 -10.51300 -10.06750 -8.25620 -6.42183 1.24949 1.41687 1.44712 1.52577 1.55785 1.60990 1.93771 2.26637 2.40515 2.67713 2.75334 2.88431 3.04137 3.33771 3.47730 3.58798 3.66007 3.91006 3.99434 4.28945 4.37964 4.39481 4.41303 4.52862 4.56940 4.64141 4.68406 4.89456 5.13539 5.23746 5.40015 5.53940 5.71259 5.78436 6.01758 6.17271 6.25480 6.62463 6.99702 7.14217 7.29644 8.80282 Molecular weight = 323.12amu Principal moments of inertia in cm(-1) A = 0.016043 B = 0.005103 C = 0.004665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.903543 B = 5485.875690 C = 6000.166980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.121 4.121 3 C 0.232 3.768 4 H 0.008 0.992 5 C -0.549 4.549 6 H 0.067 0.933 7 C 0.017 3.983 8 N -0.916 5.916 9 Si 0.976 3.024 10 H -0.266 1.266 11 H -0.281 1.281 12 H -0.266 1.266 13 O -0.350 6.350 14 C 0.441 3.559 15 O -0.528 6.528 16 C -0.102 4.102 17 H 0.162 0.838 18 C 0.131 3.869 19 N -0.701 5.701 20 C 0.541 3.459 21 O -0.602 6.602 22 C -0.144 4.144 23 C -0.114 4.114 24 H 0.191 0.809 25 C 0.448 3.552 26 F -0.174 7.174 27 F -0.180 7.180 28 F -0.182 7.182 29 H 0.030 0.970 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.041 0.959 33 H 0.079 0.921 34 H 0.268 0.732 35 H 0.146 0.854 36 H 0.096 0.904 37 H 0.409 0.591 38 H 0.087 0.913 39 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.500 9.174 15.302 18.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.159 4.159 3 C 0.179 3.821 4 H 0.026 0.974 5 C -0.586 4.586 6 H 0.085 0.915 7 C -0.183 4.183 8 N -0.554 5.554 9 Si 0.799 3.201 10 H -0.191 1.191 11 H -0.206 1.206 12 H -0.191 1.191 13 O -0.266 6.266 14 C 0.284 3.716 15 O -0.418 6.418 16 C -0.121 4.121 17 H 0.180 0.820 18 C 0.007 3.993 19 N -0.352 5.352 20 C 0.328 3.672 21 O -0.484 6.484 22 C -0.184 4.184 23 C -0.133 4.133 24 H 0.209 0.791 25 C 0.393 3.607 26 F -0.155 7.155 27 F -0.161 7.161 28 F -0.163 7.163 29 H 0.049 0.951 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.059 0.941 33 H 0.097 0.903 34 H 0.078 0.922 35 H 0.164 0.836 36 H 0.114 0.886 37 H 0.246 0.754 38 H 0.105 0.895 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -7.079 8.806 14.710 18.549 hybrid contribution 0.927 -0.577 -1.044 1.511 sum -6.152 8.229 13.666 17.098 Atomic orbital electron populations 1.21806 0.96715 1.00327 1.00453 1.21734 0.94114 0.98403 1.01649 1.20240 0.94157 0.89090 0.78597 0.97402 1.21374 0.90973 1.39881 1.06405 0.91483 1.25768 1.03872 0.94038 0.94586 1.70018 1.37339 1.38194 1.09802 0.85338 0.78201 0.78852 0.77679 1.19081 1.20617 1.19113 1.86481 1.41962 1.57217 1.40905 1.23996 0.79415 0.78059 0.90146 1.90665 1.51836 1.63229 1.36120 1.21712 1.02061 0.95445 0.92882 0.82030 1.21589 0.82598 0.93017 1.02063 1.45225 1.20206 1.17955 1.51772 1.19590 0.83941 0.83679 0.79954 1.90731 1.23181 1.81915 1.52623 1.21844 0.99458 0.97737 0.99323 1.22696 0.95040 0.94401 1.01145 0.79146 1.20621 0.77807 0.85748 0.76476 1.93199 1.57876 1.89648 1.74826 1.93189 1.67144 1.79932 1.75832 1.93294 1.88896 1.75832 1.58294 0.95129 0.92830 0.92918 0.94056 0.90256 0.92231 0.83602 0.88569 0.75388 0.89451 0.84667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.01 8.64 71.98 0.62 -5.39 16 2 C -0.12 -6.07 5.49 30.59 0.17 -5.90 16 3 C 0.23 12.13 2.20 29.85 0.07 12.19 16 4 H 0.01 0.49 7.00 -2.38 -0.02 0.47 16 5 C -0.55 -30.22 8.90 25.60 0.23 -29.99 16 6 H 0.07 3.59 7.81 -2.91 -0.02 3.57 16 7 C 0.02 0.93 5.29 84.66 0.45 1.38 16 8 N -0.92 -52.29 11.29 21.45 0.24 -52.04 16 9 Si 0.98 42.35 29.54 68.60 2.03 44.38 16 10 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 11 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 12 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 13 O -0.35 -15.11 7.86 -51.43 -0.40 -15.52 16 14 C 0.44 15.49 3.72 71.24 0.27 15.76 16 15 O -0.53 -21.86 11.57 21.95 0.25 -21.60 16 16 C -0.10 -2.04 2.58 -11.45 -0.03 -2.07 16 17 H 0.16 2.42 7.64 -2.39 -0.02 2.40 16 18 C 0.13 1.80 6.32 86.49 0.55 2.34 16 19 N -0.70 -14.44 4.84 -467.31 -2.26 -16.70 16 20 C 0.54 14.99 6.56 87.71 0.58 15.57 16 21 O -0.60 -22.00 17.78 -3.03 -0.05 -22.06 16 22 C -0.14 -3.47 4.48 29.71 0.13 -3.33 16 23 C -0.11 -2.01 2.14 -10.65 -0.02 -2.03 16 24 H 0.19 1.35 8.13 -2.39 -0.02 1.33 16 25 C 0.45 10.34 2.70 71.98 0.19 10.54 16 26 F -0.17 -3.88 16.70 44.97 0.75 -3.13 16 27 F -0.18 -3.94 17.05 44.97 0.77 -3.18 16 28 F -0.18 -5.95 11.03 44.97 0.50 -5.45 16 29 H 0.03 1.44 7.74 -2.38 -0.02 1.42 16 30 H 0.05 2.18 2.91 -2.39 -0.01 2.17 16 31 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.04 2.03 8.14 -2.38 -0.02 2.01 16 33 H 0.08 4.42 5.94 -2.39 -0.01 4.40 16 34 H 0.27 14.49 8.31 -92.71 -0.77 13.72 16 35 H 0.15 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.10 1.36 8.12 -2.39 -0.02 1.34 16 37 H 0.41 7.74 8.80 -92.71 -0.82 6.93 16 38 H 0.09 2.75 4.65 -2.39 -0.01 2.74 16 39 H 0.14 2.66 8.13 -2.39 -0.02 2.64 16 Total: -1.00 -75.97 317.58 5.32 -70.65 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: 0.31 Total: 15.60 kcal Atomic # 6 Polarization: 5.86 SS G_CDS: 3.19 Total: 9.05 kcal Atomic # 7 Polarization: -66.73 SS G_CDS: -2.02 Total: -68.75 kcal Atomic # 8 Polarization: -58.97 SS G_CDS: -0.20 Total: -59.18 kcal Atomic # 9 Polarization: -13.77 SS G_CDS: 2.01 Total: -11.76 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Total: -75.97 5.32 -70.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873522664.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -232.329 kcal (2) G-P(sol) polarization free energy of solvation -75.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -308.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -302.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds