Wall clock time and date at job start Tue Mar 31 2020 14:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.46981 * 2 1 4 4 H 1.09000 * 109.47439 * 304.99790 * 3 2 1 5 5 C 1.50701 * 109.47071 * 185.00042 * 3 2 1 6 6 H 1.08000 * 119.99874 * 240.00117 * 5 3 2 7 7 C 1.37871 * 120.00296 * 59.99953 * 5 3 2 8 8 N 1.31516 * 120.00122 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00099 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47470 * 89.99786 * 9 7 5 11 11 H 1.48505 * 109.46843 * 209.99685 * 9 7 5 12 12 H 1.48501 * 109.47237 * 329.99469 * 9 7 5 13 13 O 1.45196 * 109.47180 * 64.99644 * 3 2 1 14 14 C 1.34226 * 117.00508 * 269.99687 * 13 3 2 15 15 O 1.20828 * 119.99592 * 0.02562 * 14 13 3 16 16 C 1.50699 * 120.00357 * 179.97438 * 14 13 3 17 17 H 1.08999 * 109.60065 * 339.85623 * 16 14 13 18 18 C 1.52923 * 109.60191 * 219.52913 * 16 14 13 19 19 N 1.45758 * 110.48353 * 189.48842 * 18 16 14 20 20 C 1.33353 * 124.10547 * 19.10681 * 19 18 16 21 21 O 1.21285 * 118.24340 * 177.72840 * 20 19 18 22 22 C 1.50172 * 123.51320 * 357.74336 * 20 19 18 23 23 C 1.53065 * 109.89076 * 17.59116 * 22 20 19 24 24 H 1.09002 * 109.65840 * 70.84024 * 23 22 20 25 25 C 1.52994 * 109.67912 * 191.36916 * 23 22 20 26 26 F 1.39901 * 109.46900 * 185.01280 * 25 23 22 27 27 F 1.39902 * 109.47325 * 305.00798 * 25 23 22 28 28 F 1.39897 * 109.47729 * 65.01115 * 25 23 22 29 29 H 1.08992 * 109.47636 * 300.00219 * 1 2 3 30 30 H 1.09006 * 109.46899 * 180.02562 * 1 2 3 31 31 H 1.09010 * 109.47069 * 60.00598 * 1 2 3 32 32 H 1.09000 * 109.46929 * 119.99931 * 2 1 3 33 33 H 1.09002 * 109.47123 * 239.99934 * 2 1 3 34 34 H 0.97001 * 120.00359 * 179.97438 * 8 7 5 35 35 H 1.08992 * 109.30366 * 309.80317 * 18 16 14 36 36 H 1.09000 * 109.29908 * 69.39218 * 18 16 14 37 37 H 0.96996 * 117.94348 * 199.07087 * 19 18 16 38 38 H 1.08997 * 109.39808 * 137.71289 * 22 20 19 39 39 H 1.09001 * 109.40386 * 257.54897 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1471 1.8888 0.6523 7 6 4.1433 0.8784 -1.2279 8 7 3.4063 0.3366 -2.1728 9 14 6.0050 0.8801 -1.3810 10 1 6.5539 -0.3519 -0.7597 11 1 6.3835 0.9214 -2.8164 12 1 6.5575 2.0721 -0.6889 13 8 1.6558 2.0916 1.2406 14 6 0.4727 2.7254 1.2559 15 8 -0.2193 2.7370 0.2654 16 6 0.0068 3.4216 2.5086 17 1 0.5448 3.0243 3.3693 18 6 -1.4944 3.1960 2.6929 19 7 -2.0088 4.0380 3.7657 20 6 -1.3856 5.1218 4.2298 21 8 -1.9306 5.7694 5.0985 22 6 -0.0453 5.5836 3.7343 23 6 0.2656 4.9282 2.3865 24 1 -0.3798 5.3501 1.6160 25 6 1.7314 5.1711 2.0214 26 9 1.9817 4.6703 0.7393 27 9 1.9966 6.5445 2.0455 28 9 2.5562 4.5206 2.9454 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 -0.8901 32 1 1.8933 -0.5138 0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 3.8294 -0.0612 -2.9498 35 1 -2.0118 3.4387 1.7649 36 1 -1.6736 2.1502 2.9425 37 1 -2.8579 3.7951 4.1669 38 1 -0.0568 6.6670 3.6159 39 1 0.7229 5.3062 4.4561 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000873522665.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:30 Heat of formation + Delta-G solvation = -285.102739 kcal Electronic energy + Delta-G solvation = -29998.399843 eV Core-core repulsion = 25297.826681 eV Total energy + Delta-G solvation = -4700.573162 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.118 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.01385 -47.53018 -47.39231 -40.93830 -39.66074 -37.06697 -35.73916 -34.09866 -33.54583 -31.46263 -30.47902 -27.37910 -27.15696 -24.94396 -23.30332 -22.52527 -21.30412 -19.85917 -19.49734 -18.42942 -18.26805 -17.99331 -17.56280 -16.78042 -16.67284 -16.35544 -15.73881 -15.43748 -14.98475 -14.72908 -14.51631 -14.23154 -14.12910 -13.83999 -13.78523 -13.61315 -13.51223 -13.46114 -13.16906 -12.86956 -12.37021 -12.31364 -12.07239 -11.69291 -11.65607 -11.47471 -11.35082 -11.23124 -11.00967 -10.71241 -10.33228 -10.21210 -9.93024 -9.79951 -9.46758 -9.41305 -8.88551 -8.49449 -6.21902 -4.28293 2.26793 2.51397 2.60219 2.82787 3.22846 3.24104 3.29674 3.36446 3.62791 3.68360 3.92989 4.24404 4.29391 4.40412 4.53954 4.57952 4.65759 4.88335 5.10577 5.18642 5.19914 5.31773 5.47276 5.58408 6.12126 6.18327 6.34545 6.38052 6.76252 6.84288 6.90646 7.07167 7.12563 7.55706 7.66862 7.82137 7.84376 8.09529 8.45424 8.81457 9.36761 10.84931 Molecular weight = 323.12amu Principal moments of inertia in cm(-1) A = 0.017868 B = 0.004816 C = 0.004041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.712869 B = 5812.528490 C = 6926.659372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.138 4.138 3 C 0.225 3.775 4 H 0.049 0.951 5 C -0.518 4.518 6 H 0.069 0.931 7 C 0.064 3.936 8 N -0.888 5.888 9 Si 0.909 3.091 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.271 1.271 13 O -0.343 6.343 14 C 0.457 3.543 15 O -0.502 6.502 16 C -0.103 4.103 17 H 0.122 0.878 18 C 0.125 3.875 19 N -0.715 5.715 20 C 0.529 3.471 21 O -0.550 6.550 22 C -0.132 4.132 23 C -0.129 4.129 24 H 0.132 0.868 25 C 0.454 3.546 26 F -0.158 7.158 27 F -0.183 7.183 28 F -0.171 7.171 29 H 0.029 0.971 30 H 0.034 0.966 31 H 0.054 0.946 32 H 0.042 0.958 33 H 0.110 0.890 34 H 0.266 0.734 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.407 0.593 38 H 0.122 0.878 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.093 6.419 9.574 14.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.176 4.176 3 C 0.173 3.827 4 H 0.067 0.933 5 C -0.556 4.556 6 H 0.087 0.913 7 C -0.138 4.138 8 N -0.526 5.526 9 Si 0.736 3.264 10 H -0.204 1.204 11 H -0.210 1.210 12 H -0.196 1.196 13 O -0.258 6.258 14 C 0.298 3.702 15 O -0.391 6.391 16 C -0.123 4.123 17 H 0.141 0.859 18 C 0.000 4.000 19 N -0.368 5.368 20 C 0.315 3.685 21 O -0.428 6.428 22 C -0.172 4.172 23 C -0.149 4.149 24 H 0.150 0.850 25 C 0.399 3.601 26 F -0.139 7.139 27 F -0.164 7.164 28 F -0.152 7.152 29 H 0.048 0.952 30 H 0.053 0.947 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.128 0.872 34 H 0.076 0.924 35 H 0.111 0.889 36 H 0.113 0.887 37 H 0.244 0.756 38 H 0.140 0.860 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -8.254 6.695 9.399 14.188 hybrid contribution 0.917 -0.292 -0.312 1.012 sum -7.337 6.403 9.087 13.319 Atomic orbital electron populations 1.21864 0.98427 0.99100 1.00561 1.22056 0.92597 0.99386 1.03565 1.20723 0.95172 0.88522 0.78244 0.93320 1.21002 0.89533 1.38807 1.06247 0.91327 1.24849 0.99154 0.94770 0.95037 1.69875 1.35364 1.37896 1.09508 0.86313 0.84010 0.78719 0.77376 1.20351 1.20967 1.19597 1.86498 1.33074 1.61749 1.44528 1.22421 0.81874 0.77684 0.88260 1.90639 1.55527 1.57951 1.35030 1.21278 0.98524 0.93185 0.99298 0.85941 1.21277 0.91077 0.95937 0.91688 1.45423 1.25537 1.27532 1.38297 1.19734 0.86904 0.80033 0.81819 1.90795 1.65814 1.54110 1.32049 1.21760 0.96479 1.03691 0.95222 1.22585 0.93123 0.97087 1.02099 0.84999 1.20206 0.89710 0.74148 0.76014 1.93346 1.95021 1.86738 1.38811 1.93178 1.95171 1.31733 1.96339 1.93217 1.74967 1.81156 1.65889 0.95174 0.94723 0.92726 0.93882 0.87175 0.92385 0.88885 0.88696 0.75634 0.85964 0.86342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 8.56 37.16 0.32 -2.51 16 2 C -0.14 -3.21 5.49 -26.73 -0.15 -3.36 16 3 C 0.23 5.62 2.25 -27.89 -0.06 5.56 16 4 H 0.05 1.36 7.16 -51.93 -0.37 0.99 16 5 C -0.52 -13.97 8.90 -34.44 -0.31 -14.28 16 6 H 0.07 1.86 7.81 -52.49 -0.41 1.45 16 7 C 0.06 1.71 5.29 -17.82 -0.09 1.61 16 8 N -0.89 -24.34 11.29 55.43 0.63 -23.71 16 9 Si 0.91 20.73 29.54 -169.99 -5.02 15.71 16 10 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 13 O -0.34 -7.35 9.09 -39.25 -0.36 -7.71 16 14 C 0.46 8.06 3.08 36.01 0.11 8.17 16 15 O -0.50 -9.84 13.33 -18.75 -0.25 -10.09 16 16 C -0.10 -1.25 2.01 -91.63 -0.18 -1.44 16 17 H 0.12 1.36 7.92 -51.93 -0.41 0.95 16 18 C 0.12 1.16 6.35 -4.48 -0.03 1.13 16 19 N -0.72 -6.22 5.45 -61.39 -0.33 -6.56 16 20 C 0.53 5.66 7.71 -11.87 -0.09 5.57 16 21 O -0.55 -7.81 17.78 5.55 0.10 -7.71 16 22 C -0.13 -1.23 5.02 -28.11 -0.14 -1.37 16 23 C -0.13 -1.45 1.96 -90.41 -0.18 -1.62 16 24 H 0.13 1.35 8.13 -51.93 -0.42 0.93 16 25 C 0.45 6.45 2.56 37.15 0.09 6.55 16 26 F -0.16 -2.94 14.44 2.25 0.03 -2.90 16 27 F -0.18 -2.41 16.84 2.25 0.04 -2.37 16 28 F -0.17 -2.56 16.26 2.25 0.04 -2.52 16 29 H 0.03 0.55 6.06 -51.93 -0.31 0.23 16 30 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.05 1.14 7.80 -51.92 -0.40 0.74 16 32 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.11 2.83 5.95 -51.93 -0.31 2.52 16 34 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 35 H 0.09 0.91 7.54 -51.93 -0.39 0.51 16 36 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.41 2.92 8.80 -40.82 -0.36 2.56 16 38 H 0.12 1.01 8.04 -51.93 -0.42 0.59 16 39 H 0.12 1.01 7.69 -51.93 -0.40 0.61 16 LS Contribution 330.12 15.07 4.97 4.97 Total: -1.00 -31.27 330.12 -5.48 -36.75 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -4.61 Total: 2.13 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: -0.71 Total: 4.02 kcal Atomic # 7 Polarization: -30.56 SS G_CDS: 0.29 Total: -30.27 kcal Atomic # 8 Polarization: -25.01 SS G_CDS: -0.51 Total: -25.51 kcal Atomic # 9 Polarization: -7.90 SS G_CDS: 0.11 Total: -7.79 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.27 -5.48 -36.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873522665.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -248.358 kcal (2) G-P(sol) polarization free energy of solvation -31.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -279.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -285.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds