Wall clock time and date at job start Tue Mar 31 2020 14:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.46981 * 2 1 4 4 H 1.09000 * 109.47439 * 304.99790 * 3 2 1 5 5 C 1.50701 * 109.47071 * 185.00042 * 3 2 1 6 6 H 1.08000 * 119.99874 * 240.00117 * 5 3 2 7 7 C 1.37871 * 120.00296 * 59.99953 * 5 3 2 8 8 N 1.31516 * 120.00122 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00099 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47470 * 89.99786 * 9 7 5 11 11 H 1.48505 * 109.46843 * 209.99685 * 9 7 5 12 12 H 1.48501 * 109.47237 * 329.99469 * 9 7 5 13 13 O 1.45196 * 109.47180 * 64.99644 * 3 2 1 14 14 C 1.34226 * 117.00508 * 269.99687 * 13 3 2 15 15 O 1.20828 * 119.99592 * 0.02562 * 14 13 3 16 16 C 1.50699 * 120.00357 * 179.97438 * 14 13 3 17 17 H 1.08999 * 109.60065 * 339.85623 * 16 14 13 18 18 C 1.52923 * 109.60191 * 219.52913 * 16 14 13 19 19 N 1.45758 * 110.48353 * 189.48842 * 18 16 14 20 20 C 1.33353 * 124.10547 * 19.10681 * 19 18 16 21 21 O 1.21285 * 118.24340 * 177.72840 * 20 19 18 22 22 C 1.50172 * 123.51320 * 357.74336 * 20 19 18 23 23 C 1.53065 * 109.89076 * 17.59116 * 22 20 19 24 24 H 1.09002 * 109.65840 * 70.84024 * 23 22 20 25 25 C 1.52994 * 109.67912 * 191.36916 * 23 22 20 26 26 F 1.39901 * 109.46900 * 185.01280 * 25 23 22 27 27 F 1.39902 * 109.47325 * 305.00798 * 25 23 22 28 28 F 1.39897 * 109.47729 * 65.01115 * 25 23 22 29 29 H 1.08992 * 109.47636 * 300.00219 * 1 2 3 30 30 H 1.09006 * 109.46899 * 180.02562 * 1 2 3 31 31 H 1.09010 * 109.47069 * 60.00598 * 1 2 3 32 32 H 1.09000 * 109.46929 * 119.99931 * 2 1 3 33 33 H 1.09002 * 109.47123 * 239.99934 * 2 1 3 34 34 H 0.97001 * 120.00359 * 179.97438 * 8 7 5 35 35 H 1.08992 * 109.30366 * 309.80317 * 18 16 14 36 36 H 1.09000 * 109.29908 * 69.39218 * 18 16 14 37 37 H 0.96996 * 117.94348 * 199.07087 * 19 18 16 38 38 H 1.08997 * 109.39808 * 137.71289 * 22 20 19 39 39 H 1.09001 * 109.40386 * 257.54897 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1471 1.8888 0.6523 7 6 4.1433 0.8784 -1.2279 8 7 3.4063 0.3366 -2.1728 9 14 6.0050 0.8801 -1.3810 10 1 6.5539 -0.3519 -0.7597 11 1 6.3835 0.9214 -2.8164 12 1 6.5575 2.0721 -0.6889 13 8 1.6558 2.0916 1.2406 14 6 0.4727 2.7254 1.2559 15 8 -0.2193 2.7370 0.2654 16 6 0.0068 3.4216 2.5086 17 1 0.5448 3.0243 3.3693 18 6 -1.4944 3.1960 2.6929 19 7 -2.0088 4.0380 3.7657 20 6 -1.3856 5.1218 4.2298 21 8 -1.9306 5.7694 5.0985 22 6 -0.0453 5.5836 3.7343 23 6 0.2656 4.9282 2.3865 24 1 -0.3798 5.3501 1.6160 25 6 1.7314 5.1711 2.0214 26 9 1.9817 4.6703 0.7393 27 9 1.9966 6.5445 2.0455 28 9 2.5562 4.5206 2.9454 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 -0.8901 32 1 1.8933 -0.5138 0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 3.8294 -0.0612 -2.9498 35 1 -2.0118 3.4387 1.7649 36 1 -1.6736 2.1502 2.9425 37 1 -2.8579 3.7951 4.1669 38 1 -0.0568 6.6670 3.6159 39 1 0.7229 5.3062 4.4561 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000873522665.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:30 Heat of formation + Delta-G solvation = -305.176146 kcal Electronic energy + Delta-G solvation = -29999.270291 eV Core-core repulsion = 25297.826681 eV Total energy + Delta-G solvation = -4701.443610 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.118 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -51.20074 -48.70250 -48.63904 -42.02927 -40.94919 -38.28484 -37.19149 -35.49817 -34.89287 -33.31299 -31.47945 -29.25881 -28.13269 -26.09581 -25.02532 -23.67104 -22.62396 -21.47341 -20.56970 -19.60498 -19.48119 -19.11292 -18.76778 -18.57472 -17.85880 -17.46468 -17.16866 -16.68621 -16.46819 -15.96227 -15.73853 -15.49971 -15.19869 -15.04980 -14.90485 -14.84885 -14.74835 -14.68893 -14.56334 -14.39026 -13.88493 -13.47901 -13.30927 -13.20208 -13.08235 -12.93356 -12.81889 -12.60208 -12.53896 -12.47738 -12.15433 -11.71844 -11.42692 -11.25279 -11.12785 -10.78964 -10.48787 -10.23135 -8.25186 -6.39661 1.17053 1.41334 1.42147 1.44051 1.51236 1.53873 1.73726 2.21232 2.40291 2.60452 2.64127 2.85289 3.04932 3.32165 3.43573 3.49679 3.59633 3.71689 3.97843 4.06874 4.41216 4.43619 4.44902 4.48424 4.58683 4.61780 4.73658 4.88741 5.14685 5.26879 5.43426 5.54625 5.68466 5.73431 6.01192 6.11031 6.17415 6.62704 6.95318 7.04051 7.30717 8.81078 Molecular weight = 323.12amu Principal moments of inertia in cm(-1) A = 0.017868 B = 0.004816 C = 0.004041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.712869 B = 5812.528490 C = 6926.659372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.134 4.134 3 C 0.233 3.767 4 H 0.009 0.991 5 C -0.542 4.542 6 H 0.059 0.941 7 C 0.021 3.979 8 N -0.912 5.912 9 Si 0.970 3.030 10 H -0.267 1.267 11 H -0.278 1.278 12 H -0.270 1.270 13 O -0.354 6.354 14 C 0.454 3.546 15 O -0.523 6.523 16 C -0.096 4.096 17 H 0.138 0.862 18 C 0.133 3.867 19 N -0.700 5.700 20 C 0.532 3.468 21 O -0.585 6.585 22 C -0.124 4.124 23 C -0.119 4.119 24 H 0.143 0.857 25 C 0.447 3.553 26 F -0.189 7.189 27 F -0.176 7.176 28 F -0.176 7.176 29 H 0.045 0.955 30 H 0.059 0.941 31 H 0.037 0.963 32 H 0.045 0.955 33 H 0.083 0.917 34 H 0.269 0.731 35 H 0.094 0.906 36 H 0.117 0.883 37 H 0.418 0.582 38 H 0.137 0.863 39 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.649 6.479 10.968 15.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.172 4.172 3 C 0.180 3.820 4 H 0.027 0.973 5 C -0.580 4.580 6 H 0.078 0.922 7 C -0.179 4.179 8 N -0.550 5.550 9 Si 0.794 3.206 10 H -0.192 1.192 11 H -0.204 1.204 12 H -0.195 1.195 13 O -0.270 6.270 14 C 0.296 3.704 15 O -0.413 6.413 16 C -0.116 4.116 17 H 0.156 0.844 18 C 0.009 3.991 19 N -0.353 5.353 20 C 0.320 3.680 21 O -0.466 6.466 22 C -0.163 4.163 23 C -0.138 4.138 24 H 0.161 0.839 25 C 0.393 3.607 26 F -0.171 7.171 27 F -0.158 7.158 28 F -0.158 7.158 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.102 0.898 34 H 0.078 0.922 35 H 0.112 0.888 36 H 0.136 0.864 37 H 0.256 0.744 38 H 0.155 0.845 39 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -8.840 6.743 10.799 15.500 hybrid contribution 1.074 -0.259 -0.759 1.340 sum -7.766 6.484 10.040 14.253 Atomic orbital electron populations 1.21721 0.95762 1.00743 1.00475 1.21899 0.94976 0.97989 1.02304 1.20286 0.94100 0.89115 0.78475 0.97285 1.21273 0.90910 1.39317 1.06513 0.92225 1.25648 1.03483 0.94180 0.94564 1.69991 1.37055 1.38146 1.09843 0.85377 0.78774 0.78959 0.77525 1.19215 1.20375 1.19506 1.86468 1.35366 1.62571 1.42578 1.23350 0.80333 0.76810 0.89886 1.90631 1.55719 1.58434 1.36475 1.21385 1.00620 0.93051 0.96562 0.84412 1.21267 0.88674 0.97241 0.91952 1.45288 1.25690 1.26665 1.37621 1.19830 0.86995 0.79945 0.81274 1.90797 1.66700 1.55300 1.33783 1.21775 0.96172 1.04399 0.93965 1.22615 0.90915 0.96587 1.03718 0.83870 1.20679 0.91173 0.74213 0.74682 1.93287 1.95358 1.87262 1.41152 1.93186 1.95282 1.31092 1.96201 1.93202 1.75459 1.81343 1.65783 0.93575 0.92155 0.94406 0.93582 0.89839 0.92170 0.88829 0.86447 0.74372 0.84464 0.85105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.06 8.56 71.98 0.62 -4.44 16 2 C -0.13 -6.29 5.49 30.59 0.17 -6.13 16 3 C 0.23 11.95 2.25 29.85 0.07 12.01 16 4 H 0.01 0.54 7.16 -2.39 -0.02 0.53 16 5 C -0.54 -29.99 8.90 25.60 0.23 -29.76 16 6 H 0.06 3.31 7.81 -2.91 -0.02 3.28 16 7 C 0.02 1.14 5.29 84.65 0.45 1.59 16 8 N -0.91 -51.02 11.29 21.45 0.24 -50.78 16 9 Si 0.97 42.69 29.54 68.60 2.03 44.72 16 10 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 11 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 12 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 13 O -0.35 -15.27 9.09 -51.37 -0.47 -15.74 16 14 C 0.45 15.72 3.08 71.24 0.22 15.94 16 15 O -0.52 -20.43 13.33 21.96 0.29 -20.13 16 16 C -0.10 -2.14 2.01 -11.45 -0.02 -2.16 16 17 H 0.14 2.69 7.92 -2.39 -0.02 2.67 16 18 C 0.13 2.07 6.35 86.49 0.55 2.62 16 19 N -0.70 -10.00 5.45 -467.31 -2.55 -12.54 16 20 C 0.53 9.94 7.71 87.71 0.68 10.62 16 21 O -0.58 -15.36 17.78 -3.05 -0.05 -15.41 16 22 C -0.12 -1.98 5.02 29.70 0.15 -1.83 16 23 C -0.12 -2.43 1.96 -10.66 -0.02 -2.45 16 24 H 0.14 2.64 8.13 -2.39 -0.02 2.62 16 25 C 0.45 12.33 2.56 71.98 0.18 12.52 16 26 F -0.19 -7.15 14.44 44.97 0.65 -6.50 16 27 F -0.18 -4.44 16.84 44.97 0.76 -3.68 16 28 F -0.18 -5.12 16.26 44.97 0.73 -4.39 16 29 H 0.05 1.61 6.06 -2.39 -0.01 1.60 16 30 H 0.06 2.01 8.14 -2.38 -0.02 2.00 16 31 H 0.04 1.58 7.80 -2.38 -0.02 1.56 16 32 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.08 4.39 5.95 -2.39 -0.01 4.38 16 34 H 0.27 14.16 8.31 -92.71 -0.77 13.39 16 35 H 0.09 1.55 7.54 -2.39 -0.02 1.54 16 36 H 0.12 1.40 8.14 -2.39 -0.02 1.39 16 37 H 0.42 4.67 8.80 -92.71 -0.82 3.86 16 38 H 0.14 1.87 8.04 -2.39 -0.02 1.85 16 39 H 0.13 1.84 7.69 -2.39 -0.02 1.82 16 Total: -1.00 -69.40 330.12 5.19 -64.21 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: 0.30 Total: 11.72 kcal Atomic # 6 Polarization: 5.27 SS G_CDS: 3.26 Total: 8.53 kcal Atomic # 7 Polarization: -61.01 SS G_CDS: -2.30 Total: -63.32 kcal Atomic # 8 Polarization: -51.05 SS G_CDS: -0.23 Total: -51.28 kcal Atomic # 9 Polarization: -16.71 SS G_CDS: 2.14 Total: -14.58 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Total: -69.40 5.19 -64.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873522665.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -240.968 kcal (2) G-P(sol) polarization free energy of solvation -69.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -310.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -305.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds