Wall clock time and date at job start Tue Mar 31 2020 14:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47081 * 2 1 4 4 H 1.09002 * 109.46560 * 304.99847 * 3 2 1 5 5 C 1.50699 * 109.47042 * 184.99904 * 3 2 1 6 6 H 1.07990 * 119.99971 * 239.99861 * 5 3 2 7 7 C 1.37877 * 119.99637 * 59.99769 * 5 3 2 8 8 N 1.31515 * 120.00419 * 0.02562 * 7 5 3 9 9 Si 1.86806 * 119.99758 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46881 * 59.99989 * 9 7 5 11 11 H 1.48499 * 109.46967 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46984 * 300.00099 * 9 7 5 13 13 O 1.45201 * 109.47240 * 64.99806 * 3 2 1 14 14 C 1.34228 * 116.99864 * 270.00244 * 13 3 2 15 15 O 1.20823 * 120.00405 * 359.97438 * 14 13 3 16 16 C 1.50704 * 119.99511 * 180.02562 * 14 13 3 17 17 H 1.09009 * 109.59762 * 185.31883 * 16 14 13 18 18 C 1.52914 * 109.60206 * 305.80615 * 16 14 13 19 19 N 1.45759 * 110.48425 * 170.51408 * 18 16 14 20 20 C 1.33346 * 124.10796 * 340.94908 * 19 18 16 21 21 O 1.21289 * 118.24520 * 182.22869 * 20 19 18 22 22 C 1.50179 * 123.51085 * 2.17453 * 20 19 18 23 23 C 1.53069 * 109.89340 * 342.46513 * 22 20 19 24 24 H 1.09007 * 109.67062 * 289.13950 * 23 22 20 25 25 C 1.53007 * 109.70186 * 168.63471 * 23 22 20 26 26 F 1.39905 * 109.46312 * 295.08770 * 25 23 22 27 27 F 1.39899 * 109.47035 * 55.08672 * 25 23 22 28 28 F 1.39891 * 109.46880 * 175.09293 * 25 23 22 29 29 H 1.08995 * 109.47608 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47271 * 300.00598 * 1 2 3 31 31 H 1.09001 * 109.47207 * 59.99929 * 1 2 3 32 32 H 1.08999 * 109.46765 * 239.99961 * 2 1 3 33 33 H 1.09002 * 109.46730 * 119.99467 * 2 1 3 34 34 H 0.97003 * 119.99959 * 179.97438 * 8 7 5 35 35 H 1.09002 * 109.30253 * 290.82054 * 18 16 14 36 36 H 1.08998 * 109.30003 * 50.20537 * 18 16 14 37 37 H 0.97001 * 117.94290 * 160.92823 * 19 18 16 38 38 H 1.08997 * 109.41499 * 222.31689 * 22 20 19 39 39 H 1.09004 * 109.37798 * 102.57950 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5419 1.4443 -0.1238 6 1 4.1471 1.8889 0.6522 7 6 4.1432 0.8783 -1.2279 8 7 3.4061 0.3374 -2.1733 9 14 6.0049 0.8812 -1.3818 10 1 6.5975 0.1473 -0.2348 11 1 6.3977 0.2176 -2.6509 12 1 6.4994 2.2814 -1.3822 13 8 1.6558 2.0917 1.2407 14 6 0.4727 2.7254 1.2559 15 8 -0.2189 2.7377 0.2652 16 6 0.0074 3.4226 2.5083 17 1 -1.0065 3.7960 2.3638 18 6 0.0345 2.4421 3.6814 19 7 -0.1943 3.1440 4.9383 20 6 -0.0376 4.4583 5.0999 21 8 -0.2178 4.9263 6.2043 22 6 0.3510 5.3900 3.9881 23 6 0.9463 4.5929 2.8247 24 1 1.9276 4.2105 3.1061 25 6 1.0781 5.4946 1.5956 26 9 -0.1946 5.8833 1.1640 27 9 1.8249 6.6299 1.9281 28 9 1.7244 4.7948 0.5712 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 3.8292 -0.0605 -2.9502 35 1 -0.7433 1.6913 3.5415 36 1 1.0056 1.9485 3.7161 37 1 -0.4785 2.6223 5.7050 38 1 1.0898 6.1029 4.3542 39 1 -0.5311 5.9296 3.6433 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000873522666.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:33 Heat of formation + Delta-G solvation = -286.496268 kcal Electronic energy + Delta-G solvation = -29974.621205 eV Core-core repulsion = 25273.987615 eV Total energy + Delta-G solvation = -4700.633590 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.118 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.09075 -47.60142 -47.47498 -40.88322 -39.65693 -36.95469 -35.90010 -34.04095 -33.56990 -31.49048 -30.52817 -27.35136 -27.14778 -24.83120 -23.33324 -22.54619 -21.27834 -20.16524 -19.46614 -18.46904 -18.35877 -17.98873 -17.30468 -16.80487 -16.60787 -16.45684 -15.72435 -15.22224 -14.99647 -14.82137 -14.68600 -14.27271 -14.17973 -13.93814 -13.78818 -13.67426 -13.58157 -13.55352 -13.06910 -12.93135 -12.31284 -12.24959 -12.14751 -11.75579 -11.61571 -11.48616 -11.36320 -11.26253 -11.00489 -10.75058 -10.36259 -10.18614 -9.92692 -9.78959 -9.50401 -9.38248 -8.91264 -8.51399 -6.23907 -4.31113 2.29577 2.50747 2.58532 2.91922 3.22594 3.25294 3.27486 3.36533 3.61441 3.65211 3.85148 4.19532 4.28258 4.38468 4.52588 4.55600 4.67052 4.88751 5.08496 5.16374 5.24039 5.33144 5.44358 5.73985 6.11388 6.17502 6.34098 6.41530 6.74626 6.84191 6.93958 7.06110 7.11157 7.53254 7.65109 7.82147 7.85779 8.06971 8.43626 8.77761 9.34079 10.82774 Molecular weight = 323.12amu Principal moments of inertia in cm(-1) A = 0.015061 B = 0.004790 C = 0.004397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.631149 B = 5844.651340 C = 6366.518434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.137 4.137 3 C 0.225 3.775 4 H 0.049 0.951 5 C -0.520 4.520 6 H 0.068 0.932 7 C 0.065 3.935 8 N -0.887 5.887 9 Si 0.909 3.091 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.274 1.274 13 O -0.347 6.347 14 C 0.455 3.545 15 O -0.496 6.496 16 C -0.097 4.097 17 H 0.126 0.874 18 C 0.118 3.882 19 N -0.715 5.715 20 C 0.529 3.471 21 O -0.550 6.550 22 C -0.132 4.132 23 C -0.133 4.133 24 H 0.140 0.860 25 C 0.452 3.548 26 F -0.179 7.179 27 F -0.180 7.180 28 F -0.157 7.157 29 H 0.034 0.966 30 H 0.029 0.971 31 H 0.053 0.947 32 H 0.110 0.890 33 H 0.043 0.957 34 H 0.267 0.733 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.407 0.593 38 H 0.122 0.878 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.440 5.549 10.574 13.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.175 4.175 3 C 0.173 3.827 4 H 0.066 0.934 5 C -0.558 4.558 6 H 0.086 0.914 7 C -0.138 4.138 8 N -0.525 5.525 9 Si 0.736 3.264 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.200 1.200 13 O -0.263 6.263 14 C 0.295 3.705 15 O -0.385 6.385 16 C -0.117 4.117 17 H 0.144 0.856 18 C -0.006 4.006 19 N -0.367 5.367 20 C 0.315 3.685 21 O -0.428 6.428 22 C -0.172 4.172 23 C -0.152 4.152 24 H 0.158 0.842 25 C 0.398 3.602 26 F -0.160 7.160 27 F -0.161 7.161 28 F -0.138 7.138 29 H 0.053 0.947 30 H 0.048 0.952 31 H 0.073 0.927 32 H 0.128 0.872 33 H 0.061 0.939 34 H 0.077 0.923 35 H 0.113 0.887 36 H 0.114 0.886 37 H 0.243 0.757 38 H 0.140 0.860 39 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -6.597 5.815 10.393 13.614 hybrid contribution 0.786 -0.195 -0.396 0.902 sum -5.811 5.620 9.997 12.856 Atomic orbital electron populations 1.21871 0.98416 0.99119 1.00645 1.22051 0.92556 0.99351 1.03546 1.20722 0.95120 0.88546 0.78312 0.93351 1.20942 0.89469 1.39098 1.06333 0.91388 1.24857 0.99152 0.94738 0.95044 1.69867 1.35490 1.37690 1.09437 0.86368 0.83948 0.78540 0.77510 1.19948 1.21024 1.19966 1.86437 1.33264 1.62042 1.44567 1.22472 0.81806 0.77837 0.88365 1.90679 1.55523 1.57381 1.34870 1.21619 1.01319 0.94948 0.93849 0.85597 1.21389 1.04834 0.93467 0.80905 1.45426 1.69393 1.08024 1.13900 1.19712 0.76528 0.82673 0.89546 1.90795 1.51640 1.75007 1.25396 1.21754 1.04638 0.98193 0.92628 1.22644 1.04812 0.94950 0.92833 0.84236 1.20296 0.74212 0.79912 0.85811 1.93193 1.39925 1.91749 1.91135 1.93184 1.77109 1.53429 1.92416 1.93358 1.81324 1.77766 1.61387 0.94688 0.95160 0.92749 0.87213 0.93870 0.92283 0.88694 0.88576 0.75674 0.85951 0.86626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 8.57 37.16 0.32 -2.52 16 2 C -0.14 -3.13 5.49 -26.73 -0.15 -3.27 16 3 C 0.23 5.50 2.25 -27.88 -0.06 5.43 16 4 H 0.05 1.35 7.16 -51.93 -0.37 0.98 16 5 C -0.52 -13.66 8.90 -34.44 -0.31 -13.97 16 6 H 0.07 1.75 7.81 -52.49 -0.41 1.34 16 7 C 0.06 1.69 5.29 -17.82 -0.09 1.60 16 8 N -0.89 -24.08 11.29 55.43 0.63 -23.45 16 9 Si 0.91 20.34 29.54 -169.99 -5.02 15.32 16 10 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 11 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 12 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 13 O -0.35 -7.06 9.08 -39.25 -0.36 -7.42 16 14 C 0.45 8.04 2.63 36.01 0.09 8.13 16 15 O -0.50 -10.33 14.20 -18.75 -0.27 -10.60 16 16 C -0.10 -1.18 1.99 -91.64 -0.18 -1.37 16 17 H 0.13 1.39 7.89 -51.92 -0.41 0.98 16 18 C 0.12 1.12 6.45 -4.49 -0.03 1.09 16 19 N -0.71 -6.36 5.45 -61.39 -0.33 -6.70 16 20 C 0.53 5.76 7.71 -11.87 -0.09 5.67 16 21 O -0.55 -7.92 17.78 5.55 0.10 -7.83 16 22 C -0.13 -1.25 5.02 -28.10 -0.14 -1.39 16 23 C -0.13 -1.51 1.96 -90.41 -0.18 -1.69 16 24 H 0.14 1.51 8.13 -51.93 -0.42 1.09 16 25 C 0.45 6.32 2.56 37.16 0.10 6.42 16 26 F -0.18 -2.51 16.26 2.25 0.04 -2.48 16 27 F -0.18 -2.36 16.84 2.25 0.04 -2.32 16 28 F -0.16 -2.90 14.74 2.25 0.03 -2.86 16 29 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.03 0.55 6.06 -51.93 -0.31 0.23 16 31 H 0.05 1.16 7.80 -51.93 -0.40 0.75 16 32 H 0.11 2.78 5.95 -51.93 -0.31 2.47 16 33 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 35 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.10 0.96 7.74 -51.93 -0.40 0.56 16 37 H 0.41 3.02 8.80 -40.82 -0.36 2.66 16 38 H 0.12 1.03 8.04 -51.93 -0.42 0.62 16 39 H 0.12 0.97 7.69 -51.93 -0.40 0.57 16 LS Contribution 331.12 15.07 4.99 4.99 Total: -1.00 -31.08 331.12 -5.50 -36.58 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -4.62 Total: 2.63 kcal Atomic # 6 Polarization: 4.86 SS G_CDS: -0.72 Total: 4.13 kcal Atomic # 7 Polarization: -30.44 SS G_CDS: 0.29 Total: -30.15 kcal Atomic # 8 Polarization: -25.32 SS G_CDS: -0.52 Total: -25.84 kcal Atomic # 9 Polarization: -7.77 SS G_CDS: 0.11 Total: -7.66 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.08 -5.50 -36.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873522666.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -249.917 kcal (2) G-P(sol) polarization free energy of solvation -31.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -280.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -286.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds