Wall clock time and date at job start Tue Mar 31 2020 14:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33146 * 119.99835 * 2 1 4 4 F 1.35104 * 119.99938 * 352.92215 * 3 2 1 5 5 C 1.47252 * 119.99957 * 172.91865 * 3 2 1 6 6 O 1.21628 * 120.00344 * 352.70517 * 5 3 2 7 7 N 1.34774 * 120.00212 * 172.69708 * 5 3 2 8 8 C 1.39983 * 120.00740 * 183.48725 * 7 5 3 9 9 C 1.38740 * 120.07477 * 332.64964 * 8 7 5 10 10 C 1.38188 * 120.01470 * 179.97438 * 9 8 7 11 11 C 1.38551 * 120.17998 * 359.97438 * 10 9 8 12 12 F 1.35101 * 119.92009 * 179.97438 * 11 10 9 13 13 C 1.38346 * 120.16246 * 0.04861 * 11 10 9 14 14 C 1.38735 * 119.97687 * 359.92868 * 13 11 10 15 15 O 1.35769 * 120.08890 * 180.32464 * 14 13 11 16 16 C 1.34806 * 116.99935 * 354.36606 * 15 14 13 17 17 H 1.07998 * 120.00273 * 5.11483 * 16 15 14 18 18 C 1.38642 * 120.00140 * 185.10762 * 16 15 14 19 19 N 1.31566 * 120.00072 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00172 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47209 * 90.00085 * 20 18 16 22 22 H 1.48497 * 109.47425 * 210.00680 * 20 18 16 23 23 H 1.48504 * 109.46672 * 330.00495 * 20 18 16 24 24 C 1.50700 * 120.00305 * 180.02562 * 2 1 3 25 25 C 1.52999 * 117.49895 * 359.90679 * 24 2 1 26 26 C 1.53002 * 60.00144 * 252.51245 * 25 24 2 27 27 H 1.08996 * 109.47183 * 89.99869 * 1 2 3 28 28 H 1.09003 * 109.46538 * 209.99617 * 1 2 3 29 29 H 1.08993 * 109.47065 * 329.99490 * 1 2 3 30 30 H 0.97010 * 119.99653 * 3.49332 * 7 5 3 31 31 H 1.08001 * 119.99113 * 359.97438 * 9 8 7 32 32 H 1.07999 * 119.90245 * 180.02562 * 10 9 8 33 33 H 1.07994 * 120.01380 * 179.97438 * 13 11 10 34 34 H 0.97002 * 120.00303 * 179.97438 * 19 18 16 35 35 H 1.09000 * 115.55299 * 145.62044 * 24 2 1 36 36 H 1.09003 * 117.49589 * 0.02562 * 25 24 2 37 37 H 1.08991 * 117.49958 * 145.01977 * 25 24 2 38 38 H 1.08989 * 117.49576 * 252.51075 * 26 25 24 39 39 H 1.08999 * 117.49666 * 107.48505 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1727 1.1531 0.0000 4 9 1.5049 2.3187 -0.1442 5 6 3.6368 1.1580 0.1572 6 8 4.2238 0.1255 0.4193 7 7 4.3265 2.3066 0.0106 8 6 5.7242 2.2986 0.0876 9 6 6.3737 1.3287 0.8376 10 6 7.7535 1.3217 0.9123 11 6 8.4924 2.2812 0.2392 12 9 9.8411 2.2697 0.3164 13 6 7.8524 3.2520 -0.5104 14 6 6.4674 3.2650 -0.5904 15 8 5.8372 4.2127 -1.3307 16 6 6.6060 5.1809 -1.8681 17 1 7.6806 5.1335 -1.7709 18 6 6.0173 6.2375 -2.5457 19 7 4.7083 6.2956 -2.6638 20 14 7.0827 7.5788 -3.2909 21 1 7.4408 7.2097 -4.6841 22 1 6.3335 8.8609 -3.2954 23 1 8.3210 7.7319 -2.4856 24 6 2.2606 -1.3051 -0.0006 25 6 1.4386 -2.5955 0.0010 26 6 2.1872 -2.1637 1.2637 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3632 -0.8901 0.5138 29 1 -0.3633 0.8899 0.5139 30 1 3.8543 3.1389 -0.1483 31 1 5.8007 0.5791 1.3631 32 1 8.2572 0.5657 1.4963 33 1 8.4307 3.9990 -1.0337 34 1 4.2963 7.0350 -3.1376 35 1 3.1985 -1.3061 -0.5559 36 1 0.3527 -2.5004 0.0021 37 1 1.8355 -3.4457 -0.5534 38 1 3.0766 -2.7300 1.5397 39 1 1.5938 -1.7847 2.0957 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000901060336.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:58 Heat of formation + Delta-G solvation = -77.985217 kcal Electronic energy + Delta-G solvation = -26875.816881 eV Core-core repulsion = 22614.994233 eV Total energy + Delta-G solvation = -4260.822648 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.112 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -48.79694 -48.28527 -40.29152 -38.91968 -37.77984 -36.31280 -34.19276 -32.99615 -32.44131 -29.62190 -28.98228 -27.61073 -25.54701 -23.82678 -22.49017 -22.31810 -21.81466 -20.66800 -19.03208 -18.40355 -17.91738 -17.45239 -16.94012 -16.36339 -15.91174 -15.38985 -15.26788 -15.05712 -14.77801 -14.45188 -14.33010 -14.16113 -14.06995 -13.61604 -13.59017 -13.35650 -13.26531 -12.63688 -12.39634 -12.36723 -12.26052 -11.75561 -11.64192 -11.44414 -11.39268 -11.01308 -10.92651 -10.74500 -10.59110 -10.50994 -9.85447 -9.80382 -9.23254 -8.98946 -8.74166 -7.92502 -7.14369 -6.62306 -4.20879 1.01567 1.84647 2.07943 3.05186 3.06644 3.11128 3.11606 3.27508 3.82837 3.84295 4.21200 4.30513 4.54330 4.68657 4.82221 4.89330 4.93693 5.02510 5.04163 5.07673 5.31923 5.36705 5.53252 5.55085 5.69693 5.71802 5.80264 5.89115 5.98829 6.03856 6.11516 6.20648 6.41331 6.52350 6.70652 6.86886 6.90379 6.96849 7.15077 7.59324 7.76834 7.81640 8.30085 8.82622 9.42372 10.54210 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.012163 B = 0.004032 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.566915 B = 6943.032201 C = 8999.854859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.051 4.051 3 C -0.005 4.005 4 F -0.132 7.132 5 C 0.540 3.460 6 O -0.512 6.512 7 N -0.635 5.635 8 C 0.056 3.944 9 C -0.058 4.058 10 C -0.230 4.230 11 C 0.131 3.869 12 F -0.151 7.151 13 C -0.258 4.258 14 C 0.158 3.842 15 O -0.167 6.167 16 C -0.394 4.394 17 H 0.095 0.905 18 C 0.044 3.956 19 N -0.856 5.856 20 Si 0.943 3.057 21 H -0.272 1.272 22 H -0.276 1.276 23 H -0.266 1.266 24 C -0.106 4.106 25 C -0.186 4.186 26 C -0.153 4.153 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.421 0.579 31 H 0.153 0.847 32 H 0.123 0.877 33 H 0.144 0.856 34 H 0.273 0.727 35 H 0.135 0.865 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.099 0.901 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.483 -11.370 5.497 14.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.054 4.054 3 C -0.027 4.027 4 F -0.111 7.111 5 C 0.328 3.672 6 O -0.391 6.391 7 N -0.277 5.277 8 C -0.039 4.039 9 C -0.078 4.078 10 C -0.250 4.250 11 C 0.111 3.889 12 F -0.130 7.130 13 C -0.279 4.279 14 C 0.102 3.898 15 O -0.070 6.070 16 C -0.470 4.470 17 H 0.113 0.887 18 C -0.162 4.162 19 N -0.489 5.489 20 Si 0.767 3.233 21 H -0.197 1.197 22 H -0.201 1.201 23 H -0.190 1.190 24 C -0.124 4.124 25 C -0.223 4.223 26 C -0.190 4.190 27 H 0.100 0.900 28 H 0.096 0.904 29 H 0.093 0.907 30 H 0.258 0.742 31 H 0.170 0.830 32 H 0.141 0.859 33 H 0.161 0.839 34 H 0.083 0.917 35 H 0.153 0.847 36 H 0.114 0.886 37 H 0.115 0.885 38 H 0.117 0.883 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.505 -11.800 5.481 14.547 hybrid contribution 0.517 1.518 -0.603 1.713 sum -5.988 -10.282 4.878 12.860 Atomic orbital electron populations 1.20903 0.90220 1.03542 1.03401 1.21823 0.96146 0.92598 0.94870 1.19300 0.89733 0.82003 1.11676 1.91506 1.79860 1.46327 1.93381 1.18199 0.86297 0.83931 0.78769 1.90708 1.68697 1.31532 1.48170 1.43030 1.05433 1.10898 1.68366 1.16920 0.81436 1.00899 1.04636 1.20929 0.93298 0.97435 0.96106 1.20509 0.93874 1.02461 1.08143 1.17492 0.76005 0.96637 0.98773 1.91414 1.30235 1.96294 1.95039 1.20836 0.94301 1.03934 1.08840 1.18765 0.89966 0.90725 0.90390 1.83922 1.35557 1.32157 1.55316 1.21364 0.90954 1.00438 1.34253 0.88724 1.25309 0.96436 0.97693 0.96737 1.70015 1.08928 1.31375 1.38628 0.85671 0.79100 0.79088 0.79416 1.19716 1.20098 1.19004 1.21140 1.00475 0.86999 1.03769 1.23146 0.98896 0.98098 1.02164 1.22838 1.02556 1.02353 0.91304 0.89954 0.90412 0.90688 0.74218 0.82980 0.85872 0.83886 0.91702 0.84721 0.88588 0.88463 0.88263 0.89007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.17 9.28 36.01 0.33 -0.84 16 2 C -0.05 -0.64 5.81 -101.12 -0.59 -1.23 16 3 C 0.00 -0.07 7.34 -37.69 -0.28 -0.35 16 4 F -0.13 -2.06 15.92 2.25 0.04 -2.03 16 5 C 0.54 9.34 7.54 -12.60 -0.09 9.25 16 6 O -0.51 -9.02 10.43 5.25 0.05 -8.96 16 7 N -0.63 -12.15 5.26 -10.74 -0.06 -12.21 16 8 C 0.06 1.15 6.44 -83.48 -0.54 0.61 16 9 C -0.06 -1.08 8.76 -39.41 -0.35 -1.43 16 10 C -0.23 -4.19 10.02 -39.48 -0.40 -4.58 16 11 C 0.13 2.59 7.29 -39.43 -0.29 2.30 16 12 F -0.15 -2.86 17.26 2.25 0.04 -2.82 16 13 C -0.26 -5.61 9.14 -39.36 -0.36 -5.97 16 14 C 0.16 3.64 6.66 -38.93 -0.26 3.38 16 15 O -0.17 -4.39 9.21 0.06 0.00 -4.39 16 16 C -0.39 -10.41 9.49 30.88 0.29 -10.11 16 17 H 0.10 2.34 5.21 -52.49 -0.27 2.07 16 18 C 0.04 1.14 5.49 -17.52 -0.10 1.04 16 19 N -0.86 -23.53 13.67 55.48 0.76 -22.77 16 20 Si 0.94 19.68 29.55 -169.99 -5.02 14.65 16 21 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 22 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 23 H -0.27 -5.38 7.11 56.52 0.40 -4.97 16 24 C -0.11 -1.27 4.26 -91.77 -0.39 -1.66 16 25 C -0.19 -1.69 9.80 -26.73 -0.26 -1.95 16 26 C -0.15 -1.57 10.23 -26.73 -0.27 -1.84 16 27 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.08 0.58 6.30 -51.93 -0.33 0.26 16 29 H 0.07 0.71 7.66 -51.93 -0.40 0.31 16 30 H 0.42 8.19 7.96 -40.82 -0.33 7.86 16 31 H 0.15 2.72 5.66 -52.49 -0.30 2.42 16 32 H 0.12 1.93 8.06 -52.49 -0.42 1.50 16 33 H 0.14 3.10 5.64 -52.49 -0.30 2.80 16 34 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 35 H 0.14 1.91 6.40 -51.93 -0.33 1.58 16 36 H 0.10 0.73 6.27 -51.93 -0.33 0.41 16 37 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.10 1.00 8.14 -51.94 -0.42 0.58 16 39 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 340.21 15.07 5.13 5.13 Total: -1.00 -28.24 340.21 -6.43 -34.67 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: -3.82 Total: 12.11 kcal Atomic # 6 Polarization: -9.84 SS G_CDS: -3.54 Total: -13.38 kcal Atomic # 7 Polarization: -35.68 SS G_CDS: 0.70 Total: -34.98 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: 0.06 Total: -13.35 kcal Atomic # 9 Polarization: -4.92 SS G_CDS: 0.07 Total: -4.85 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.02 Total: 14.65 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -28.24 -6.43 -34.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000901060336.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.318 kcal (2) G-P(sol) polarization free energy of solvation -28.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds