Wall clock time and date at job start Tue Mar 31 2020 14:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33146 * 119.99835 * 2 1 4 4 F 1.35104 * 119.99938 * 352.92215 * 3 2 1 5 5 C 1.47252 * 119.99957 * 172.91865 * 3 2 1 6 6 O 1.21628 * 120.00344 * 352.70517 * 5 3 2 7 7 N 1.34774 * 120.00212 * 172.69708 * 5 3 2 8 8 C 1.39983 * 120.00740 * 183.48725 * 7 5 3 9 9 C 1.38740 * 120.07477 * 332.64964 * 8 7 5 10 10 C 1.38188 * 120.01470 * 179.97438 * 9 8 7 11 11 C 1.38551 * 120.17998 * 359.97438 * 10 9 8 12 12 F 1.35101 * 119.92009 * 179.97438 * 11 10 9 13 13 C 1.38346 * 120.16246 * 0.04861 * 11 10 9 14 14 C 1.38735 * 119.97687 * 359.92868 * 13 11 10 15 15 O 1.35769 * 120.08890 * 180.32464 * 14 13 11 16 16 C 1.34806 * 116.99935 * 354.36606 * 15 14 13 17 17 H 1.07998 * 120.00273 * 5.11483 * 16 15 14 18 18 C 1.38642 * 120.00140 * 185.10762 * 16 15 14 19 19 N 1.31566 * 120.00072 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00172 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47209 * 90.00085 * 20 18 16 22 22 H 1.48497 * 109.47425 * 210.00680 * 20 18 16 23 23 H 1.48504 * 109.46672 * 330.00495 * 20 18 16 24 24 C 1.50700 * 120.00305 * 180.02562 * 2 1 3 25 25 C 1.52999 * 117.49895 * 359.90679 * 24 2 1 26 26 C 1.53002 * 60.00144 * 252.51245 * 25 24 2 27 27 H 1.08996 * 109.47183 * 89.99869 * 1 2 3 28 28 H 1.09003 * 109.46538 * 209.99617 * 1 2 3 29 29 H 1.08993 * 109.47065 * 329.99490 * 1 2 3 30 30 H 0.97010 * 119.99653 * 3.49332 * 7 5 3 31 31 H 1.08001 * 119.99113 * 359.97438 * 9 8 7 32 32 H 1.07999 * 119.90245 * 180.02562 * 10 9 8 33 33 H 1.07994 * 120.01380 * 179.97438 * 13 11 10 34 34 H 0.97002 * 120.00303 * 179.97438 * 19 18 16 35 35 H 1.09000 * 115.55299 * 145.62044 * 24 2 1 36 36 H 1.09003 * 117.49589 * 0.02562 * 25 24 2 37 37 H 1.08991 * 117.49958 * 145.01977 * 25 24 2 38 38 H 1.08989 * 117.49576 * 252.51075 * 26 25 24 39 39 H 1.08999 * 117.49666 * 107.48505 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1727 1.1531 0.0000 4 9 1.5049 2.3187 -0.1442 5 6 3.6368 1.1580 0.1572 6 8 4.2238 0.1255 0.4193 7 7 4.3265 2.3066 0.0106 8 6 5.7242 2.2986 0.0876 9 6 6.3737 1.3287 0.8376 10 6 7.7535 1.3217 0.9123 11 6 8.4924 2.2812 0.2392 12 9 9.8411 2.2697 0.3164 13 6 7.8524 3.2520 -0.5104 14 6 6.4674 3.2650 -0.5904 15 8 5.8372 4.2127 -1.3307 16 6 6.6060 5.1809 -1.8681 17 1 7.6806 5.1335 -1.7709 18 6 6.0173 6.2375 -2.5457 19 7 4.7083 6.2956 -2.6638 20 14 7.0827 7.5788 -3.2909 21 1 7.4408 7.2097 -4.6841 22 1 6.3335 8.8609 -3.2954 23 1 8.3210 7.7319 -2.4856 24 6 2.2606 -1.3051 -0.0006 25 6 1.4386 -2.5955 0.0010 26 6 2.1872 -2.1637 1.2637 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3632 -0.8901 0.5138 29 1 -0.3633 0.8899 0.5139 30 1 3.8543 3.1389 -0.1483 31 1 5.8007 0.5791 1.3631 32 1 8.2572 0.5657 1.4963 33 1 8.4307 3.9990 -1.0337 34 1 4.2963 7.0350 -3.1376 35 1 3.1985 -1.3061 -0.5559 36 1 0.3527 -2.5004 0.0021 37 1 1.8355 -3.4457 -0.5534 38 1 3.0766 -2.7300 1.5397 39 1 1.5938 -1.7847 2.0957 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000901060336.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:57 Heat of formation + Delta-G solvation = -93.030068 kcal Electronic energy + Delta-G solvation = -26876.469275 eV Core-core repulsion = 22614.994233 eV Total energy + Delta-G solvation = -4261.475041 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.112 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.94137 -49.85495 -41.78206 -40.44846 -38.88534 -37.92764 -35.67177 -34.34734 -33.96222 -31.22743 -30.46240 -28.78838 -27.42406 -25.04232 -23.90204 -23.34232 -23.09116 -22.04730 -20.32233 -20.20396 -19.33239 -18.91362 -18.30388 -17.52889 -17.19780 -17.01463 -16.87103 -16.62248 -16.10586 -15.99580 -15.66654 -15.39359 -15.35557 -15.28649 -15.02311 -14.96028 -14.07342 -14.04692 -13.83260 -13.71473 -13.47213 -13.23619 -13.08985 -12.66202 -12.51824 -12.38571 -12.17863 -12.15756 -11.80715 -11.65679 -11.45190 -11.33438 -10.86101 -10.53951 -9.80952 -9.58570 -8.79195 -8.53305 -6.20872 -0.18318 0.29501 0.43046 1.35321 1.42737 1.51474 1.76623 1.91612 2.12617 2.63490 2.97410 3.02014 3.05036 3.15901 3.41507 3.44293 3.79927 3.91409 3.99012 4.13075 4.19951 4.21844 4.32306 4.38168 4.53020 4.64216 4.81612 4.86105 4.92205 4.97305 4.99690 5.07843 5.18686 5.24515 5.26579 5.30961 5.31836 5.44199 5.49018 5.89813 5.99427 6.30294 6.84816 6.90624 7.58250 8.67104 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.012163 B = 0.004032 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.566915 B = 6943.032201 C = 8999.854859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.011 4.011 3 C -0.050 4.050 4 F -0.142 7.142 5 C 0.541 3.459 6 O -0.518 6.518 7 N -0.647 5.647 8 C 0.056 3.944 9 C -0.057 4.057 10 C -0.201 4.201 11 C 0.124 3.876 12 F -0.143 7.143 13 C -0.263 4.263 14 C 0.129 3.871 15 O -0.205 6.205 16 C -0.418 4.418 17 H 0.101 0.899 18 C -0.010 4.010 19 N -0.906 5.906 20 Si 1.014 2.986 21 H -0.265 1.265 22 H -0.269 1.269 23 H -0.256 1.256 24 C -0.141 4.141 25 C -0.158 4.158 26 C -0.150 4.150 27 H 0.097 0.903 28 H 0.106 0.894 29 H 0.075 0.925 30 H 0.415 0.585 31 H 0.168 0.832 32 H 0.161 0.839 33 H 0.137 0.863 34 H 0.275 0.725 35 H 0.109 0.891 36 H 0.119 0.881 37 H 0.108 0.892 38 H 0.099 0.901 39 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.828 -13.713 6.460 16.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.014 4.014 3 C -0.072 4.072 4 F -0.121 7.121 5 C 0.331 3.669 6 O -0.397 6.397 7 N -0.289 5.289 8 C -0.038 4.038 9 C -0.077 4.077 10 C -0.221 4.221 11 C 0.104 3.896 12 F -0.122 7.122 13 C -0.284 4.284 14 C 0.075 3.925 15 O -0.111 6.111 16 C -0.494 4.494 17 H 0.119 0.881 18 C -0.209 4.209 19 N -0.542 5.542 20 Si 0.834 3.166 21 H -0.190 1.190 22 H -0.194 1.194 23 H -0.179 1.179 24 C -0.159 4.159 25 C -0.195 4.195 26 C -0.187 4.187 27 H 0.115 0.885 28 H 0.125 0.875 29 H 0.094 0.906 30 H 0.251 0.749 31 H 0.185 0.815 32 H 0.179 0.821 33 H 0.154 0.846 34 H 0.085 0.915 35 H 0.127 0.873 36 H 0.137 0.863 37 H 0.126 0.874 38 H 0.117 0.883 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -6.837 -14.199 6.474 17.038 hybrid contribution 0.614 1.880 -0.740 2.112 sum -6.223 -12.319 5.733 14.945 Atomic orbital electron populations 1.21087 0.87521 1.05042 1.04687 1.22313 0.97916 0.91771 0.89442 1.19132 0.88596 0.82788 1.16679 1.91476 1.79659 1.46908 1.94024 1.18582 0.87357 0.83147 0.77787 1.90676 1.69285 1.31315 1.48443 1.43160 1.04926 1.11460 1.69357 1.17250 0.82446 1.00361 1.03784 1.21167 0.93777 0.97070 0.95698 1.20934 0.93477 1.01660 1.06030 1.17484 0.76451 0.96671 0.98954 1.91433 1.29559 1.96244 1.94975 1.20911 0.93975 1.04436 1.09089 1.19158 0.90876 0.91148 0.91284 1.83910 1.36316 1.33375 1.57457 1.21785 0.91515 1.01153 1.34938 0.88135 1.26454 0.97785 0.99776 0.96933 1.70139 1.10831 1.32645 1.40626 0.84644 0.77483 0.75882 0.78634 1.18955 1.19391 1.17927 1.21110 1.00781 0.88144 1.05861 1.23282 0.99824 0.95900 1.00456 1.22933 1.03082 1.01267 0.91374 0.88459 0.87527 0.90589 0.74902 0.81536 0.82095 0.84563 0.91547 0.87311 0.86292 0.87392 0.88281 0.87966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.02 9.28 71.24 0.66 -1.36 16 2 C -0.01 -0.27 5.81 -17.59 -0.10 -0.37 16 3 C -0.05 -1.52 7.34 23.50 0.17 -1.35 16 4 F -0.14 -4.59 15.92 44.97 0.72 -3.88 16 5 C 0.54 19.17 7.54 86.61 0.65 19.83 16 6 O -0.52 -18.18 10.43 -4.12 -0.04 -18.22 16 7 N -0.65 -25.94 5.26 -306.14 -1.61 -27.55 16 8 C 0.06 2.40 6.44 38.26 0.25 2.65 16 9 C -0.06 -2.09 8.76 22.38 0.20 -1.90 16 10 C -0.20 -6.86 10.02 22.33 0.22 -6.64 16 11 C 0.12 4.78 7.29 22.37 0.16 4.94 16 12 F -0.14 -5.18 17.26 44.97 0.78 -4.41 16 13 C -0.26 -11.67 9.14 22.41 0.20 -11.47 16 14 C 0.13 6.20 6.66 22.69 0.15 6.36 16 15 O -0.21 -11.47 9.21 -22.71 -0.21 -11.68 16 16 C -0.42 -23.18 9.49 67.92 0.64 -22.53 16 17 H 0.10 5.20 5.21 -2.91 -0.02 5.18 16 18 C -0.01 -0.53 5.49 84.83 0.47 -0.06 16 19 N -0.91 -52.34 13.67 21.61 0.30 -52.04 16 20 Si 1.01 41.33 29.55 68.60 2.03 43.36 16 21 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 22 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 23 H -0.26 -9.83 7.11 99.48 0.71 -9.13 16 24 C -0.14 -3.13 4.26 -11.54 -0.05 -3.17 16 25 C -0.16 -2.27 9.80 30.59 0.30 -1.97 16 26 C -0.15 -2.62 10.23 30.60 0.31 -2.31 16 27 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.11 1.10 6.30 -2.39 -0.02 1.09 16 29 H 0.08 1.26 7.66 -2.39 -0.02 1.24 16 30 H 0.41 17.44 7.96 -92.70 -0.74 16.70 16 31 H 0.17 5.68 5.66 -2.91 -0.02 5.67 16 32 H 0.16 4.32 8.06 -2.91 -0.02 4.30 16 33 H 0.14 6.12 5.64 -2.91 -0.02 6.11 16 34 H 0.28 14.64 8.31 -92.71 -0.77 13.86 16 35 H 0.11 3.05 6.40 -2.39 -0.02 3.03 16 36 H 0.12 1.20 6.27 -2.39 -0.01 1.18 16 37 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -64.60 340.21 6.60 -58.00 By element: Atomic # 1 Polarization: 35.36 SS G_CDS: 0.40 Total: 35.76 kcal Atomic # 6 Polarization: -23.60 SS G_CDS: 4.24 Total: -19.36 kcal Atomic # 7 Polarization: -78.27 SS G_CDS: -1.31 Total: -79.59 kcal Atomic # 8 Polarization: -29.65 SS G_CDS: -0.25 Total: -29.90 kcal Atomic # 9 Polarization: -9.77 SS G_CDS: 1.49 Total: -8.28 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 2.03 Total: 43.36 kcal Total: -64.60 6.60 -58.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000901060336.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.025 kcal (2) G-P(sol) polarization free energy of solvation -64.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds