Wall clock time and date at job start Tue Mar 31 2020 14:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.33137 * 120.00052 * 2 1 4 4 F 1.35100 * 120.00433 * 172.45888 * 3 2 1 5 5 C 1.47256 * 120.00162 * 352.45696 * 3 2 1 6 6 O 1.21633 * 119.99964 * 353.16061 * 5 3 2 7 7 N 1.34783 * 120.00607 * 173.16552 * 5 3 2 8 8 C 1.39981 * 120.00130 * 184.17490 * 7 5 3 9 9 C 1.38734 * 120.08334 * 333.00532 * 8 7 5 10 10 C 1.38179 * 120.02039 * 179.97438 * 9 8 7 11 11 C 1.38551 * 120.18111 * 359.97438 * 10 9 8 12 12 F 1.35098 * 119.92449 * 180.02562 * 11 10 9 13 13 C 1.38357 * 120.15788 * 0.04025 * 11 10 9 14 14 C 1.38733 * 119.97787 * 359.95927 * 13 11 10 15 15 O 1.35768 * 120.08782 * 180.29465 * 14 13 11 16 16 C 1.34809 * 116.99928 * 354.46892 * 15 14 13 17 17 H 1.07996 * 119.99872 * 5.07733 * 16 15 14 18 18 C 1.38640 * 119.99999 * 185.08254 * 16 15 14 19 19 N 1.31568 * 120.00148 * 179.97438 * 18 16 15 20 20 Si 1.86807 * 119.99844 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.46821 * 89.99908 * 20 18 16 22 22 H 1.48499 * 109.46855 * 209.99756 * 20 18 16 23 23 H 1.48497 * 109.47008 * 329.99877 * 20 18 16 24 24 C 1.50700 * 119.99833 * 180.02562 * 2 1 3 25 25 C 1.52992 * 117.50271 * 8.61826 * 24 2 1 26 26 C 1.52994 * 60.00487 * 252.51257 * 25 24 2 27 27 H 1.09000 * 109.47260 * 84.19773 * 1 2 3 28 28 H 1.09003 * 109.47406 * 204.19905 * 1 2 3 29 29 H 1.08997 * 109.47357 * 324.19321 * 1 2 3 30 30 H 0.96997 * 119.99374 * 4.17192 * 7 5 3 31 31 H 1.08008 * 119.98782 * 0.02562 * 9 8 7 32 32 H 1.08000 * 119.90929 * 180.02562 * 10 9 8 33 33 H 1.07994 * 120.00558 * 180.02562 * 13 11 10 34 34 H 0.96997 * 119.99868 * 180.02562 * 19 18 16 35 35 H 1.09003 * 115.54754 * 154.33436 * 24 2 1 36 36 H 1.09006 * 117.49747 * 0.02562 * 25 24 2 37 37 H 1.09007 * 117.50066 * 145.01696 * 25 24 2 38 38 H 1.09002 * 117.49865 * 252.51659 * 26 25 24 39 39 H 1.09003 * 117.50341 * 107.48286 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1726 1.1530 0.0000 4 9 3.5149 1.1581 0.1535 5 6 1.4459 2.4228 -0.1674 6 8 0.2582 2.4138 -0.4295 7 7 2.0968 3.5950 -0.0303 8 6 1.3897 4.8009 -0.1026 9 6 0.2133 4.8744 -0.8344 10 6 -0.4840 6.0653 -0.9045 11 6 -0.0121 7.1886 -0.2449 12 9 -0.6983 8.3502 -0.3166 13 6 1.1604 7.1238 0.4867 14 6 1.8658 5.9315 0.5616 15 8 3.0134 5.8638 1.2838 16 6 3.4746 7.0163 1.8095 17 1 2.8938 7.9222 1.7177 18 6 4.6945 7.0387 2.4679 19 7 5.1448 8.1636 2.9805 20 14 5.6987 5.4716 2.6272 21 1 6.6111 5.3479 1.4621 22 1 6.4973 5.5206 3.8782 23 1 4.7861 4.3009 2.6679 24 6 2.2604 -1.3051 -0.0006 25 6 1.4517 -2.5877 -0.2045 26 6 2.0260 -2.2567 1.1744 27 1 -0.3634 0.1039 -1.0224 28 1 -0.3634 -0.9374 0.4212 29 1 -0.3634 0.8334 0.6012 30 1 3.0553 3.6030 0.1186 31 1 -0.1580 4.0002 -1.3488 32 1 -1.3998 6.1204 -1.4743 33 1 1.5258 8.0008 1.0002 34 1 5.9985 8.1793 3.4408 35 1 3.2631 -1.2689 -0.4265 36 1 0.3745 -2.4875 -0.3387 37 1 1.9221 -3.3956 -0.7650 38 1 2.8744 -2.8468 1.5211 39 1 1.3268 -1.9387 1.9478 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000901060347.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:01 Heat of formation + Delta-G solvation = -76.170547 kcal Electronic energy + Delta-G solvation = -26821.672514 eV Core-core repulsion = 22560.928556 eV Total energy + Delta-G solvation = -4260.743958 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.112 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -48.90483 -48.33263 -40.46278 -39.06096 -38.14400 -36.56747 -34.49626 -33.07120 -32.54801 -29.71094 -29.04011 -27.28168 -25.53511 -24.70240 -22.72434 -22.55763 -21.69401 -20.55806 -19.12318 -18.32226 -18.17750 -17.72408 -17.11857 -16.50575 -16.09993 -15.58370 -15.37299 -15.15049 -14.90285 -14.62965 -14.46998 -14.18054 -14.08850 -13.86581 -13.60679 -13.41140 -13.15457 -12.66046 -12.62492 -12.37991 -12.36324 -11.93112 -11.88984 -11.70112 -11.51510 -11.14512 -10.98091 -10.85930 -10.77674 -10.47718 -10.01561 -9.76493 -9.39657 -9.03695 -8.87962 -8.03528 -7.30075 -6.58037 -4.25686 0.87642 1.72856 1.95876 2.93955 3.06275 3.10670 3.15012 3.26135 3.57010 4.07654 4.13811 4.20655 4.26232 4.47080 4.48594 4.60190 4.73563 4.77519 4.90639 4.93302 5.27558 5.38585 5.45021 5.51771 5.56644 5.63564 5.70476 5.76413 5.79988 5.87647 5.95392 6.04186 6.32310 6.35948 6.64864 6.75500 6.80922 6.85877 7.39717 7.53654 7.62310 7.82579 8.11545 8.74641 9.28306 10.48691 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.010804 B = 0.004434 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2591.000609 B = 6313.943641 C = 8698.415000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.042 4.042 3 C -0.012 4.012 4 F -0.135 7.135 5 C 0.542 3.458 6 O -0.512 6.512 7 N -0.638 5.638 8 C 0.055 3.945 9 C -0.059 4.059 10 C -0.222 4.222 11 C 0.131 3.869 12 F -0.148 7.148 13 C -0.245 4.245 14 C 0.165 3.835 15 O -0.207 6.207 16 C -0.393 4.393 17 H 0.110 0.890 18 C 0.068 3.932 19 N -0.869 5.869 20 Si 0.901 3.099 21 H -0.270 1.270 22 H -0.279 1.279 23 H -0.258 1.258 24 C -0.133 4.133 25 C -0.168 4.168 26 C -0.163 4.163 27 H 0.085 0.915 28 H 0.062 0.938 29 H 0.094 0.906 30 H 0.417 0.583 31 H 0.155 0.845 32 H 0.126 0.874 33 H 0.150 0.850 34 H 0.282 0.718 35 H 0.119 0.881 36 H 0.103 0.897 37 H 0.100 0.900 38 H 0.101 0.899 39 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.175 -17.612 -6.085 19.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.045 4.045 3 C -0.034 4.034 4 F -0.114 7.114 5 C 0.330 3.670 6 O -0.391 6.391 7 N -0.281 5.281 8 C -0.039 4.039 9 C -0.079 4.079 10 C -0.242 4.242 11 C 0.111 3.889 12 F -0.127 7.127 13 C -0.266 4.266 14 C 0.111 3.889 15 O -0.111 6.111 16 C -0.468 4.468 17 H 0.127 0.873 18 C -0.137 4.137 19 N -0.505 5.505 20 Si 0.726 3.274 21 H -0.195 1.195 22 H -0.204 1.204 23 H -0.182 1.182 24 C -0.151 4.151 25 C -0.204 4.204 26 C -0.200 4.200 27 H 0.104 0.896 28 H 0.081 0.919 29 H 0.112 0.888 30 H 0.253 0.747 31 H 0.173 0.827 32 H 0.144 0.856 33 H 0.168 0.832 34 H 0.093 0.907 35 H 0.136 0.864 36 H 0.122 0.878 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -6.593 -17.641 -6.035 19.776 hybrid contribution 1.378 -0.007 0.348 1.421 sum -5.215 -17.648 -5.687 19.261 Atomic orbital electron populations 1.21037 0.88727 1.03021 1.04170 1.21909 0.97282 0.91433 0.93907 1.19272 0.77618 0.94022 1.12489 1.91485 1.29449 1.97043 1.93422 1.18170 0.86911 0.83202 0.78695 1.90718 1.14127 1.86253 1.48031 1.42990 1.12260 1.03786 1.69023 1.16931 0.97654 0.84191 1.05122 1.20966 0.92749 0.98020 0.96200 1.20579 1.03660 0.92166 1.07804 1.17506 0.91232 0.81383 0.98749 1.91431 1.78925 1.47372 1.94943 1.20967 0.97282 1.00245 1.08096 1.18471 0.88088 0.91831 0.90558 1.83519 1.33875 1.35579 1.58142 1.20774 1.05028 0.86121 1.34853 0.87259 1.24468 0.95825 0.98235 0.95132 1.69638 1.20795 1.25617 1.34494 0.86253 0.80135 0.82786 0.78244 1.19548 1.20430 1.18190 1.21108 1.00336 0.88227 1.05472 1.23072 1.00412 0.97258 0.99684 1.23003 1.03730 1.01607 0.91666 0.89613 0.91899 0.88790 0.74688 0.82733 0.85615 0.83238 0.90717 0.86353 0.87831 0.88157 0.88074 0.88205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.18 7.90 36.00 0.28 -0.90 16 2 C -0.04 -0.49 5.81 -101.13 -0.59 -1.07 16 3 C -0.01 -0.16 7.35 -37.69 -0.28 -0.44 16 4 F -0.14 -1.96 16.04 2.25 0.04 -1.92 16 5 C 0.54 8.65 7.49 -12.59 -0.09 8.56 16 6 O -0.51 -8.38 10.31 5.25 0.05 -8.33 16 7 N -0.64 -11.25 5.26 -10.74 -0.06 -11.31 16 8 C 0.06 1.07 6.45 -83.48 -0.54 0.54 16 9 C -0.06 -1.05 8.77 -39.42 -0.35 -1.40 16 10 C -0.22 -3.86 10.02 -39.49 -0.40 -4.26 16 11 C 0.13 2.53 7.29 -39.42 -0.29 2.24 16 12 F -0.15 -2.78 17.26 2.25 0.04 -2.74 16 13 C -0.25 -5.25 9.14 -39.35 -0.36 -5.61 16 14 C 0.17 3.63 6.66 -38.93 -0.26 3.37 16 15 O -0.21 -5.04 8.03 0.05 0.00 -5.04 16 16 C -0.39 -10.47 9.95 30.88 0.31 -10.16 16 17 H 0.11 3.01 5.44 -52.49 -0.29 2.72 16 18 C 0.07 1.82 5.49 -17.52 -0.10 1.73 16 19 N -0.87 -24.10 13.96 55.48 0.77 -23.33 16 20 Si 0.90 20.40 28.62 -169.99 -4.86 15.53 16 21 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 22 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 23 H -0.26 -5.78 7.11 56.52 0.40 -5.38 16 24 C -0.13 -1.26 5.70 -91.77 -0.52 -1.78 16 25 C -0.17 -1.18 9.76 -26.74 -0.26 -1.44 16 26 C -0.16 -1.27 10.11 -26.73 -0.27 -1.54 16 27 H 0.09 0.88 8.01 -51.93 -0.42 0.47 16 28 H 0.06 0.51 6.29 -51.93 -0.33 0.18 16 29 H 0.09 1.17 6.22 -51.93 -0.32 0.84 16 30 H 0.42 7.22 7.95 -40.82 -0.32 6.89 16 31 H 0.16 2.59 5.61 -52.48 -0.29 2.29 16 32 H 0.13 1.86 8.06 -52.49 -0.42 1.44 16 33 H 0.15 3.35 5.64 -52.49 -0.30 3.06 16 34 H 0.28 7.23 8.31 -40.82 -0.34 6.89 16 35 H 0.12 1.13 7.88 -51.93 -0.41 0.72 16 36 H 0.10 0.67 6.41 -51.93 -0.33 0.34 16 37 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 338.94 15.07 5.11 5.11 Total: -1.00 -27.87 338.94 -6.45 -34.32 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -3.83 Total: 9.88 kcal Atomic # 6 Polarization: -8.46 SS G_CDS: -3.70 Total: -12.17 kcal Atomic # 7 Polarization: -35.36 SS G_CDS: 0.72 Total: -34.64 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: 0.05 Total: -13.37 kcal Atomic # 9 Polarization: -4.74 SS G_CDS: 0.07 Total: -4.67 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -4.86 Total: 15.53 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -27.87 -6.45 -34.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000901060347.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.852 kcal (2) G-P(sol) polarization free energy of solvation -27.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds