Wall clock time and date at job start Tue Mar 31 2020 14:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47095 * 2 1 4 4 H 1.09003 * 109.47296 * 54.99767 * 3 2 1 5 5 C 1.50699 * 109.47094 * 174.99822 * 3 2 1 6 6 H 1.08002 * 119.99947 * 119.99470 * 5 3 2 7 7 C 1.37877 * 120.00176 * 299.99814 * 5 3 2 8 8 N 1.31519 * 119.99713 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00225 * 179.97438 * 7 5 3 10 10 H 1.48508 * 109.47041 * 89.99845 * 9 7 5 11 11 H 1.48494 * 109.47512 * 209.99924 * 9 7 5 12 12 H 1.48499 * 109.47145 * 330.00100 * 9 7 5 13 13 N 1.46502 * 109.46763 * 294.99593 * 3 2 1 14 14 C 1.34774 * 119.99704 * 85.00251 * 13 3 2 15 15 O 1.21278 * 120.00178 * 359.97438 * 14 13 3 16 16 C 1.50706 * 119.99657 * 179.97438 * 14 13 3 17 17 C 1.50704 * 109.46755 * 179.97438 * 16 14 13 18 18 C 1.33974 * 126.90842 * 264.99915 * 17 16 14 19 19 O 1.34457 * 110.15718 * 180.02562 * 18 17 16 20 20 C 1.34885 * 110.88117 * 359.97438 * 19 18 17 21 21 C 1.40445 * 107.27185 * 0.02562 * 20 19 18 22 22 C 1.39432 * 120.21096 * 179.76076 * 21 20 19 23 23 C 1.37742 * 119.66433 * 0.41301 * 22 21 20 24 24 C 1.38895 * 120.27156 * 359.60819 * 23 22 21 25 25 F 1.35105 * 119.69001 * 180.19904 * 24 23 22 26 26 C 1.38229 * 120.61208 * 0.17462 * 24 23 22 27 27 F 1.35104 * 120.04418 * 180.02562 * 26 24 23 28 28 H 1.09007 * 109.47099 * 60.00218 * 1 2 3 29 29 H 1.08995 * 109.47168 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47420 * 300.00361 * 1 2 3 31 31 H 1.08997 * 109.47419 * 239.99954 * 2 1 3 32 32 H 1.08996 * 109.47196 * 119.99295 * 2 1 3 33 33 H 0.97004 * 119.99723 * 179.97438 * 8 7 5 34 34 H 0.97003 * 120.00081 * 264.99696 * 13 3 2 35 35 H 1.08997 * 109.46871 * 60.00310 * 16 14 13 36 36 H 1.08992 * 109.47351 * 300.00086 * 16 14 13 37 37 H 1.08001 * 124.91854 * 359.97438 * 18 17 16 38 38 H 1.07994 * 120.16487 * 180.29494 * 22 21 20 39 39 H 1.08003 * 119.85917 * 179.80374 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1472 1.8889 -0.6523 7 6 4.1432 0.8785 1.2280 8 7 3.4061 0.3376 2.1734 9 14 6.0049 0.8801 1.3813 10 1 6.4427 2.1131 2.0837 11 1 6.4390 -0.3108 2.1547 12 1 6.6131 0.8395 0.0271 13 7 1.6525 2.0974 -1.2519 14 6 0.4352 2.6643 -1.3671 15 8 -0.3396 2.6319 -0.4345 16 6 0.0367 3.3385 -2.6547 17 6 -1.3613 3.8858 -2.5234 18 6 -2.4985 3.2871 -2.9019 19 8 -3.5514 4.0771 -2.6280 20 6 -3.1507 5.2311 -2.0560 21 6 -1.7507 5.1824 -1.9553 22 6 -1.0495 6.2528 -1.4013 23 6 -1.7374 7.3555 -0.9452 24 6 -3.1220 7.4067 -1.0430 25 9 -3.7846 8.4958 -0.5955 26 6 -3.8282 6.3540 -1.5942 27 9 -5.1748 6.4162 -1.6841 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 3.8292 -0.0608 2.9501 34 1 2.2720 2.1231 -1.9979 35 1 0.0681 2.6143 -3.4687 36 1 0.7281 4.1539 -2.8669 37 1 -2.5604 2.3116 -3.3612 38 1 0.0274 6.2165 -1.3285 39 1 -1.1977 8.1849 -0.5127 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000907386945.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:38 Heat of formation + Delta-G solvation = -102.900151 kcal Electronic energy + Delta-G solvation = -26778.731699 eV Core-core repulsion = 22516.828659 eV Total energy + Delta-G solvation = -4261.903040 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.112 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.65443 -48.70648 -42.67724 -39.05166 -37.79038 -35.24565 -33.73776 -32.42027 -31.07207 -30.55970 -29.73772 -28.11166 -26.62818 -23.83337 -23.09975 -22.92807 -21.19246 -20.00644 -19.35846 -18.28508 -18.02073 -17.62126 -17.16838 -16.82448 -16.04734 -15.91877 -15.62663 -15.35727 -15.24007 -15.02975 -14.90701 -14.55377 -14.28560 -14.01627 -13.20903 -12.99142 -12.86543 -12.67625 -12.53197 -12.02688 -12.00964 -11.85827 -11.63139 -11.30232 -11.27305 -11.00149 -10.87682 -10.36392 -10.23944 -9.98728 -9.67313 -9.11152 -9.03704 -8.95441 -8.53891 -8.23443 -7.86981 -6.16488 -4.26300 0.40738 0.83436 2.03557 2.31716 3.15624 3.20959 3.28117 3.29235 3.33623 3.61824 4.06729 4.12683 4.19177 4.32304 4.38010 4.58292 4.74778 4.96120 5.11639 5.15040 5.34809 5.43438 5.50049 5.57727 5.72448 5.76729 5.95708 6.17987 6.28603 6.34531 6.40372 6.61389 6.83502 6.98279 7.15531 7.32187 7.40705 7.57495 7.68846 7.85754 8.14099 8.61886 8.73560 9.09288 9.41491 10.88699 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.019720 B = 0.002959 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.531515 B = 9461.193898 C =10137.387396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.271 3.729 4 H 0.048 0.952 5 C -0.535 4.535 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.900 3.100 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.709 5.709 14 C 0.498 3.502 15 O -0.539 6.539 16 C -0.077 4.077 17 C -0.139 4.139 18 C 0.023 3.977 19 O -0.180 6.180 20 C 0.042 3.958 21 C -0.091 4.091 22 C -0.040 4.040 23 C -0.143 4.143 24 C 0.090 3.910 25 F -0.123 7.123 26 C 0.076 3.924 27 F -0.125 7.125 28 H 0.038 0.962 29 H 0.022 0.978 30 H 0.049 0.951 31 H 0.031 0.969 32 H 0.098 0.902 33 H 0.265 0.735 34 H 0.388 0.612 35 H 0.102 0.898 36 H 0.101 0.899 37 H 0.214 0.786 38 H 0.147 0.853 39 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.680 9.633 -11.772 17.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.066 0.934 5 C -0.574 4.574 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.357 5.357 14 C 0.282 3.718 15 O -0.417 6.417 16 C -0.117 4.117 17 C -0.140 4.140 18 C -0.041 4.041 19 O -0.080 6.080 20 C -0.007 4.007 21 C -0.092 4.092 22 C -0.058 4.058 23 C -0.162 4.162 24 C 0.070 3.930 25 F -0.101 7.101 26 C 0.055 3.945 27 F -0.103 7.103 28 H 0.057 0.943 29 H 0.041 0.959 30 H 0.068 0.932 31 H 0.049 0.951 32 H 0.117 0.883 33 H 0.075 0.925 34 H 0.220 0.780 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.230 0.770 38 H 0.165 0.835 39 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -9.566 9.477 -10.923 17.339 hybrid contribution 1.030 0.023 -0.090 1.034 sum -8.536 9.500 -11.013 16.864 Atomic orbital electron populations 1.21831 0.98369 0.97972 1.01171 1.21933 0.92561 0.99882 1.02262 1.18769 0.94138 0.89134 0.81015 0.93377 1.21229 0.90738 1.39116 1.06289 0.92098 1.24890 0.98583 0.94793 0.95411 1.69897 1.35149 1.37523 1.09314 0.86467 0.84874 0.77676 0.78194 1.20572 1.21082 1.19849 1.46499 1.14553 1.56088 1.18586 1.20210 0.82947 0.79722 0.88877 1.90707 1.51301 1.59381 1.40355 1.20126 0.92019 1.01207 0.98341 1.20468 0.95803 0.93388 1.04376 1.23837 0.83168 0.95844 1.01288 1.84080 1.35128 1.23922 1.64908 1.18978 0.92775 0.87742 1.01179 1.19638 0.91412 0.95886 1.02254 1.20487 1.00899 0.90158 0.94291 1.20901 0.90826 1.00787 1.03680 1.17064 0.90359 0.83834 1.01737 1.91542 1.80875 1.50883 1.86831 1.16126 0.77251 0.93342 1.07782 1.91528 1.27849 1.96423 1.94523 0.94345 0.95922 0.93215 0.95056 0.88349 0.92541 0.77970 0.88003 0.88067 0.76970 0.83527 0.82908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 8.51 37.16 0.32 -2.59 16 2 C -0.13 -2.96 5.45 -26.73 -0.15 -3.11 16 3 C 0.27 6.44 2.24 -69.08 -0.15 6.28 16 4 H 0.05 1.35 7.58 -51.93 -0.39 0.96 16 5 C -0.54 -13.49 8.73 -34.44 -0.30 -13.79 16 6 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 7 C 0.07 1.73 5.29 -17.82 -0.09 1.63 16 8 N -0.88 -24.08 11.30 55.43 0.63 -23.46 16 9 Si 0.90 19.96 29.54 -169.99 -5.02 14.94 16 10 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 11 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 12 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 13 N -0.71 -13.15 5.02 -54.93 -0.28 -13.43 16 14 C 0.50 8.61 6.39 -10.98 -0.07 8.54 16 15 O -0.54 -11.59 13.17 5.56 0.07 -11.51 16 16 C -0.08 -0.89 6.25 -29.03 -0.18 -1.07 16 17 C -0.14 -1.76 4.85 -102.65 -0.50 -2.26 16 18 C 0.02 0.27 11.89 29.23 0.35 0.62 16 19 O -0.18 -2.46 10.59 3.67 0.04 -2.42 16 20 C 0.04 0.59 7.39 -38.46 -0.28 0.31 16 21 C -0.09 -1.21 6.38 -105.15 -0.67 -1.89 16 22 C -0.04 -0.46 10.10 -39.32 -0.40 -0.86 16 23 C -0.14 -1.51 10.00 -39.52 -0.40 -1.91 16 24 C 0.09 1.11 7.29 -39.34 -0.29 0.83 16 25 F -0.12 -1.52 17.16 2.25 0.04 -1.48 16 26 C 0.08 1.04 7.32 -39.29 -0.29 0.75 16 27 F -0.12 -1.78 17.17 2.25 0.04 -1.74 16 28 H 0.04 0.77 5.64 -51.92 -0.29 0.48 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.05 1.15 7.85 -51.93 -0.41 0.75 16 31 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.10 2.57 5.95 -51.93 -0.31 2.26 16 33 H 0.26 6.89 8.31 -40.82 -0.34 6.56 16 34 H 0.39 6.08 8.54 -40.82 -0.35 5.73 16 35 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.21 1.63 8.06 -52.49 -0.42 1.21 16 38 H 0.15 1.44 8.06 -52.49 -0.42 1.01 16 39 H 0.15 1.19 8.06 -52.48 -0.42 0.76 16 LS Contribution 341.68 15.07 5.15 5.15 Total: -1.00 -31.00 341.68 -6.69 -37.69 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -4.25 Total: 4.78 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: -3.10 Total: -8.51 kcal Atomic # 7 Polarization: -37.23 SS G_CDS: 0.35 Total: -36.88 kcal Atomic # 8 Polarization: -14.04 SS G_CDS: 0.11 Total: -13.93 kcal Atomic # 9 Polarization: -3.30 SS G_CDS: 0.08 Total: -3.23 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.94 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.00 -6.69 -37.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907386945.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.213 kcal (2) G-P(sol) polarization free energy of solvation -31.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds