Wall clock time and date at job start Tue Mar 31 2020 14:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47095 * 2 1 4 4 H 1.09003 * 109.47296 * 54.99767 * 3 2 1 5 5 C 1.50699 * 109.47094 * 174.99822 * 3 2 1 6 6 H 1.08002 * 119.99947 * 119.99470 * 5 3 2 7 7 C 1.37877 * 120.00176 * 299.99814 * 5 3 2 8 8 N 1.31519 * 119.99713 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00225 * 179.97438 * 7 5 3 10 10 H 1.48508 * 109.47041 * 89.99845 * 9 7 5 11 11 H 1.48494 * 109.47512 * 209.99924 * 9 7 5 12 12 H 1.48499 * 109.47145 * 330.00100 * 9 7 5 13 13 N 1.46502 * 109.46763 * 294.99593 * 3 2 1 14 14 C 1.34774 * 119.99704 * 85.00251 * 13 3 2 15 15 O 1.21278 * 120.00178 * 359.97438 * 14 13 3 16 16 C 1.50706 * 119.99657 * 179.97438 * 14 13 3 17 17 C 1.50704 * 109.46755 * 179.97438 * 16 14 13 18 18 C 1.33974 * 126.90842 * 264.99915 * 17 16 14 19 19 O 1.34457 * 110.15718 * 180.02562 * 18 17 16 20 20 C 1.34885 * 110.88117 * 359.97438 * 19 18 17 21 21 C 1.40445 * 107.27185 * 0.02562 * 20 19 18 22 22 C 1.39432 * 120.21096 * 179.76076 * 21 20 19 23 23 C 1.37742 * 119.66433 * 0.41301 * 22 21 20 24 24 C 1.38895 * 120.27156 * 359.60819 * 23 22 21 25 25 F 1.35105 * 119.69001 * 180.19904 * 24 23 22 26 26 C 1.38229 * 120.61208 * 0.17462 * 24 23 22 27 27 F 1.35104 * 120.04418 * 180.02562 * 26 24 23 28 28 H 1.09007 * 109.47099 * 60.00218 * 1 2 3 29 29 H 1.08995 * 109.47168 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47420 * 300.00361 * 1 2 3 31 31 H 1.08997 * 109.47419 * 239.99954 * 2 1 3 32 32 H 1.08996 * 109.47196 * 119.99295 * 2 1 3 33 33 H 0.97004 * 119.99723 * 179.97438 * 8 7 5 34 34 H 0.97003 * 120.00081 * 264.99696 * 13 3 2 35 35 H 1.08997 * 109.46871 * 60.00310 * 16 14 13 36 36 H 1.08992 * 109.47351 * 300.00086 * 16 14 13 37 37 H 1.08001 * 124.91854 * 359.97438 * 18 17 16 38 38 H 1.07994 * 120.16487 * 180.29494 * 22 21 20 39 39 H 1.08003 * 119.85917 * 179.80374 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1472 1.8889 -0.6523 7 6 4.1432 0.8785 1.2280 8 7 3.4061 0.3376 2.1734 9 14 6.0049 0.8801 1.3813 10 1 6.4427 2.1131 2.0837 11 1 6.4390 -0.3108 2.1547 12 1 6.6131 0.8395 0.0271 13 7 1.6525 2.0974 -1.2519 14 6 0.4352 2.6643 -1.3671 15 8 -0.3396 2.6319 -0.4345 16 6 0.0367 3.3385 -2.6547 17 6 -1.3613 3.8858 -2.5234 18 6 -2.4985 3.2871 -2.9019 19 8 -3.5514 4.0771 -2.6280 20 6 -3.1507 5.2311 -2.0560 21 6 -1.7507 5.1824 -1.9553 22 6 -1.0495 6.2528 -1.4013 23 6 -1.7374 7.3555 -0.9452 24 6 -3.1220 7.4067 -1.0430 25 9 -3.7846 8.4958 -0.5955 26 6 -3.8282 6.3540 -1.5942 27 9 -5.1748 6.4162 -1.6841 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 3.8292 -0.0608 2.9501 34 1 2.2720 2.1231 -1.9979 35 1 0.0681 2.6143 -3.4687 36 1 0.7281 4.1539 -2.8669 37 1 -2.5604 2.3116 -3.3612 38 1 0.0274 6.2165 -1.3285 39 1 -1.1977 8.1849 -0.5127 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000907386945.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:37 Heat of formation + Delta-G solvation = -121.450034 kcal Electronic energy + Delta-G solvation = -26779.536082 eV Core-core repulsion = 22516.828659 eV Total energy + Delta-G solvation = -4262.707423 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.112 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.66596 -49.72670 -43.62310 -40.51622 -38.71600 -36.93680 -34.79806 -34.21426 -32.76593 -31.49799 -30.75681 -29.40642 -28.20015 -24.97152 -24.73977 -23.86541 -22.56346 -21.37015 -20.88658 -19.23220 -19.13378 -18.76495 -18.44625 -17.93733 -17.33683 -17.07120 -17.00927 -16.70884 -16.27192 -16.23973 -16.08162 -15.87363 -15.55508 -15.10244 -14.60614 -14.55916 -14.18114 -13.76752 -13.69194 -13.44503 -13.17626 -13.12084 -12.94265 -12.81759 -12.80028 -12.66768 -12.33190 -12.12729 -11.99506 -11.52735 -11.05279 -10.97607 -10.55090 -10.39832 -9.89943 -9.51673 -9.18537 -8.12275 -6.29109 -0.54084 -0.10089 1.09783 1.40558 1.47128 1.48054 1.57885 2.00798 2.20732 2.41662 2.66960 2.88915 3.13673 3.17836 3.31200 3.41975 3.65984 3.85840 4.05320 4.18565 4.37472 4.49515 4.54054 4.60673 4.62725 4.69203 4.82214 4.85321 4.88788 5.06370 5.11778 5.28595 5.33163 5.39900 5.49497 5.62003 5.71678 5.86527 5.89042 6.01056 6.23481 6.81326 7.13374 7.39424 7.74565 8.92621 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.019720 B = 0.002959 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.531515 B = 9461.193898 C =10137.387396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.121 4.121 3 C 0.280 3.720 4 H -0.005 1.005 5 C -0.544 4.544 6 H 0.074 0.926 7 C 0.014 3.986 8 N -0.917 5.917 9 Si 0.966 3.034 10 H -0.280 1.280 11 H -0.288 1.288 12 H -0.258 1.258 13 N -0.706 5.706 14 C 0.496 3.504 15 O -0.585 6.585 16 C -0.059 4.059 17 C -0.160 4.160 18 C 0.030 3.970 19 O -0.194 6.194 20 C 0.018 3.982 21 C -0.104 4.104 22 C -0.045 4.045 23 C -0.131 4.131 24 C 0.086 3.914 25 F -0.125 7.125 26 C 0.055 3.945 27 F -0.135 7.135 28 H 0.051 0.949 29 H 0.041 0.959 30 H 0.019 0.981 31 H 0.043 0.957 32 H 0.066 0.934 33 H 0.263 0.737 34 H 0.406 0.594 35 H 0.142 0.858 36 H 0.129 0.871 37 H 0.251 0.749 38 H 0.166 0.834 39 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.198 9.975 -13.912 18.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.161 4.161 3 C 0.176 3.824 4 H 0.013 0.987 5 C -0.582 4.582 6 H 0.092 0.908 7 C -0.186 4.186 8 N -0.555 5.555 9 Si 0.791 3.209 10 H -0.206 1.206 11 H -0.214 1.214 12 H -0.182 1.182 13 N -0.356 5.356 14 C 0.283 3.717 15 O -0.466 6.466 16 C -0.099 4.099 17 C -0.161 4.161 18 C -0.034 4.034 19 O -0.096 6.096 20 C -0.030 4.030 21 C -0.105 4.105 22 C -0.063 4.063 23 C -0.149 4.149 24 C 0.066 3.934 25 F -0.104 7.104 26 C 0.034 3.966 27 F -0.114 7.114 28 H 0.070 0.930 29 H 0.060 0.940 30 H 0.038 0.962 31 H 0.062 0.938 32 H 0.084 0.916 33 H 0.072 0.928 34 H 0.241 0.759 35 H 0.160 0.840 36 H 0.147 0.853 37 H 0.266 0.734 38 H 0.184 0.816 39 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -8.077 9.841 -13.115 18.278 hybrid contribution 0.515 -0.056 0.592 0.786 sum -7.562 9.785 -12.524 17.600 Atomic orbital electron populations 1.21664 0.96989 0.98888 1.00331 1.21779 0.93697 0.99423 1.01153 1.18272 0.93309 0.89025 0.81779 0.98744 1.21629 0.91691 1.38453 1.06466 0.90760 1.25754 1.03003 0.94594 0.95232 1.70064 1.36950 1.38628 1.09897 0.85433 0.79571 0.77216 0.78639 1.20583 1.21437 1.18216 1.46228 1.15781 1.56201 1.17365 1.21179 0.81577 0.78593 0.90329 1.90702 1.52448 1.60821 1.42648 1.20093 0.91752 1.02419 0.95606 1.20669 0.96647 0.93401 1.05420 1.24627 0.82434 0.96390 0.99957 1.84071 1.36250 1.24153 1.65083 1.19180 0.93444 0.88130 1.02266 1.20005 0.91271 0.96858 1.02385 1.20805 1.01894 0.89810 0.93751 1.21241 0.90002 1.01335 1.02358 1.17256 0.91045 0.83455 1.01686 1.91534 1.81085 1.50886 1.86848 1.16422 0.77007 0.94181 1.08950 1.91488 1.28619 1.96542 1.94738 0.92978 0.94005 0.96175 0.93838 0.91597 0.92829 0.75924 0.84016 0.85270 0.73366 0.81604 0.79806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.17 8.51 71.98 0.61 -4.56 16 2 C -0.12 -5.67 5.45 30.60 0.17 -5.50 16 3 C 0.28 13.37 2.24 44.25 0.10 13.47 16 4 H -0.01 -0.31 7.58 -2.39 -0.02 -0.33 16 5 C -0.54 -27.13 8.73 25.60 0.22 -26.91 16 6 H 0.07 3.41 7.74 -2.91 -0.02 3.39 16 7 C 0.01 0.73 5.29 84.65 0.45 1.18 16 8 N -0.92 -51.33 11.30 21.45 0.24 -51.09 16 9 Si 0.97 40.56 29.54 68.60 2.03 42.58 16 10 H -0.28 -11.67 7.11 99.48 0.71 -10.97 16 11 H -0.29 -12.17 7.11 99.48 0.71 -11.46 16 12 H -0.26 -10.11 7.11 99.48 0.71 -9.41 16 13 N -0.71 -24.98 5.02 -446.08 -2.24 -27.22 16 14 C 0.50 16.19 6.39 87.66 0.56 16.75 16 15 O -0.59 -25.02 13.17 -3.02 -0.04 -25.06 16 16 C -0.06 -1.16 6.25 29.11 0.18 -0.98 16 17 C -0.16 -3.68 4.85 -18.59 -0.09 -3.77 16 18 C 0.03 0.63 11.89 66.85 0.79 1.42 16 19 O -0.19 -5.21 10.59 -9.78 -0.10 -5.32 16 20 C 0.02 0.51 7.39 23.00 0.17 0.68 16 21 C -0.10 -2.65 6.38 -20.21 -0.13 -2.78 16 22 C -0.04 -0.95 10.10 22.44 0.23 -0.72 16 23 C -0.13 -2.55 10.00 22.31 0.22 -2.32 16 24 C 0.09 2.07 7.29 22.42 0.16 2.24 16 25 F -0.13 -3.04 17.16 44.97 0.77 -2.27 16 26 C 0.06 1.53 7.32 22.46 0.16 1.69 16 27 F -0.14 -4.00 17.17 44.97 0.77 -3.22 16 28 H 0.05 2.04 5.64 -2.38 -0.01 2.03 16 29 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.02 0.93 7.85 -2.38 -0.02 0.92 16 31 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.07 3.53 5.95 -2.39 -0.01 3.52 16 33 H 0.26 14.05 8.31 -92.71 -0.77 13.28 16 34 H 0.41 11.48 8.54 -92.71 -0.79 10.69 16 35 H 0.14 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.13 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.25 2.95 8.06 -2.91 -0.02 2.92 16 38 H 0.17 2.81 8.06 -2.91 -0.02 2.78 16 39 H 0.18 2.33 8.06 -2.91 -0.02 2.30 16 Total: -1.00 -70.67 341.68 5.57 -65.10 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: 0.32 Total: 16.59 kcal Atomic # 6 Polarization: -13.92 SS G_CDS: 3.82 Total: -10.10 kcal Atomic # 7 Polarization: -76.31 SS G_CDS: -2.00 Total: -78.30 kcal Atomic # 8 Polarization: -30.23 SS G_CDS: -0.14 Total: -30.38 kcal Atomic # 9 Polarization: -7.04 SS G_CDS: 1.54 Total: -5.49 kcal Atomic # 14 Polarization: 40.56 SS G_CDS: 2.03 Total: 42.58 kcal Total: -70.67 5.57 -65.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907386945.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.352 kcal (2) G-P(sol) polarization free energy of solvation -70.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds